1 // ==========================================================================
2 // SeqAn - The Library for Sequence Analysis
3 // ==========================================================================
4 // Copyright (c) 2006-2018, Knut Reinert, FU Berlin
5 // All rights reserved.
6 //
7 // Redistribution and use in source and binary forms, with or without
8 // modification, are permitted provided that the following conditions are met:
9 //
10 // * Redistributions of source code must retain the above copyright
11 // notice, this list of conditions and the following disclaimer.
12 // * Redistributions in binary form must reproduce the above copyright
13 // notice, this list of conditions and the following disclaimer in the
14 // documentation and/or other materials provided with the distribution.
15 // * Neither the name of Knut Reinert or the FU Berlin nor the names of
16 // its contributors may be used to endorse or promote products derived
17 // from this software without specific prior written permission.
18 //
19 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
20 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
21 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
22 // ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
23 // FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
24 // DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
25 // SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
26 // CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
27 // LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
28 // OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
29 // DAMAGE.
30 //
31 // ==========================================================================
32 // Author: Manuel Holtgrewe <manuel.holtgrewe@fu-berlin.de>
33 // ==========================================================================
34 // Tests for the SeqAn module store.
35 // ==========================================================================
36
37 #include <seqan/basic.h>
38 #include "test_store_io.h"
39
SEQAN_BEGIN_TESTSUITE(test_store)40 SEQAN_BEGIN_TESTSUITE(test_store)
41 {
42 // the UCSC knownGene format
43 SEQAN_CALL_TEST(test_store_io_read_ucsc_known_genes);
44 SEQAN_CALL_TEST(test_store_io_read_ucsc_known_genes_and_isoforms);
45 SEQAN_CALL_TEST(test_store_io_write_ucsc_known_genes);
46
47 // the gff format
48 SEQAN_CALL_TEST(test_store_io_read_gff);
49 SEQAN_CALL_TEST(test_store_io_write_gff);
50
51 // the gtf format
52 SEQAN_CALL_TEST(test_store_io_read_gtf);
53 SEQAN_CALL_TEST(test_store_io_write_gtf);
54
55 // Tests for the AMOS format.
56 SEQAN_CALL_TEST(test_store_io_readwrite_amos);
57 SEQAN_CALL_TEST(test_store_io_read_amos);
58 SEQAN_CALL_TEST(test_store_io_write_amos);
59
60 // Tests for the SAM/BAM format.
61 SEQAN_CALL_TEST(test_store_io_sam);
62 SEQAN_CALL_TEST(test_store_io_sam2);
63 SEQAN_CALL_TEST(test_store_io_split_sam);
64 #if SEQAN_HAS_ZLIB
65 SEQAN_CALL_TEST(test_store_io_read_bam);
66 #endif // #if SEQAN_HAS_ZLIB
67 }
68 SEQAN_END_TESTSUITE
69