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\ 810 $(distcleancheck_listfiles) ; \ 811 exit 1; } >&2 812check-am: all-am 813check: check-am 814all-am: Makefile $(PROGRAMS) $(SCRIPTS) $(HEADERS) config.h 815installdirs: 816 for dir in "$(DESTDIR)$(bindir)" "$(DESTDIR)$(bindir)" "$(DESTDIR)$(includedir)"; do \ 817 test -z "$$dir" || $(MKDIR_P) "$$dir"; \ 818 done 819install: install-am 820install-exec: install-exec-am 821install-data: install-data-am 822uninstall: uninstall-am 823 824install-am: all-am 825 @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am 826 827installcheck: installcheck-am 828install-strip: 829 $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ 830 install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ 831 `test -z '$(STRIP)' || \ 832 echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install 833mostlyclean-generic: 834 835clean-generic: 836 -test -z "$(CLEANFILES)" || rm -f $(CLEANFILES) 837 838distclean-generic: 839 -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES) 840 -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES) 841 -rm -f bin/$(am__dirstamp) 842 -rm -f src/$(DEPDIR)/$(am__dirstamp) 843 -rm -f src/$(am__dirstamp) 844 845maintainer-clean-generic: 846 @echo "This command is intended for maintainers to use" 847 @echo "it deletes files that may require special tools to rebuild." 848clean: clean-am 849 850clean-am: clean-binPROGRAMS clean-generic mostlyclean-am 851 852distclean: distclean-am 853 -rm -f $(am__CONFIG_DISTCLEAN_FILES) 854 -rm -rf src/$(DEPDIR) 855 -rm -f Makefile 856distclean-am: clean-am distclean-compile distclean-generic \ 857 distclean-hdr distclean-tags 858 859dvi: dvi-am 860 861dvi-am: 862 863html: html-am 864 865html-am: 866 867info: info-am 868 869info-am: 870 871install-data-am: install-includeHEADERS 872 @$(NORMAL_INSTALL) 873 $(MAKE) $(AM_MAKEFLAGS) install-data-hook 874install-dvi: install-dvi-am 875 876install-dvi-am: 877 878install-exec-am: install-binPROGRAMS install-dist_binSCRIPTS 879 880install-html: install-html-am 881 882install-html-am: 883 884install-info: install-info-am 885 886install-info-am: 887 888install-man: 889 890install-pdf: install-pdf-am 891 892install-pdf-am: 893 894install-ps: install-ps-am 895 896install-ps-am: 897 898installcheck-am: 899 900maintainer-clean: maintainer-clean-am 901 -rm -f $(am__CONFIG_DISTCLEAN_FILES) 902 -rm -rf $(top_srcdir)/autom4te.cache 903 -rm -rf src/$(DEPDIR) 904 -rm -f Makefile 905maintainer-clean-am: distclean-am maintainer-clean-generic 906 907mostlyclean: mostlyclean-am 908 909mostlyclean-am: mostlyclean-compile mostlyclean-generic 910 911pdf: pdf-am 912 913pdf-am: 914 915ps: ps-am 916 917ps-am: 918 919uninstall-am: uninstall-binPROGRAMS uninstall-dist_binSCRIPTS \ 920 uninstall-includeHEADERS 921 @$(NORMAL_INSTALL) 922 $(MAKE) $(AM_MAKEFLAGS) uninstall-hook 923.MAKE: all install-am install-data-am install-strip uninstall-am 924 925.PHONY: CTAGS GTAGS all all-am am--refresh check check-am clean \ 926 clean-binPROGRAMS clean-generic ctags dist dist-all dist-bzip2 \ 927 dist-gzip dist-lzma dist-shar dist-tarZ dist-xz dist-zip \ 928 distcheck distclean distclean-compile distclean-generic \ 929 distclean-hdr distclean-tags distcleancheck distdir \ 930 distuninstallcheck dvi dvi-am html html-am info info-am \ 931 install install-am install-binPROGRAMS install-data \ 932 install-data-am install-data-hook install-dist_binSCRIPTS \ 933 install-dvi install-dvi-am install-exec install-exec-am \ 934 install-html install-html-am install-includeHEADERS \ 935 install-info install-info-am install-man install-pdf \ 936 install-pdf-am install-ps install-ps-am install-strip \ 937 installcheck installcheck-am installdirs maintainer-clean \ 938 maintainer-clean-generic mostlyclean mostlyclean-compile \ 939 mostlyclean-generic pdf pdf-am ps ps-am tags uninstall \ 940 uninstall-am uninstall-binPROGRAMS uninstall-dist_binSCRIPTS \ 941 uninstall-hook uninstall-includeHEADERS 942 943 944# then create build rules 945 946tRNAscan-SE: tRNAscan-SE.src Makefile 947 $(do_subst) < $(srcdir)/tRNAscan-SE.src > tRNAscan-SE 948 chmod +x tRNAscan-SE 949 950tRNAscan-SE.conf: tRNAscan-SE.conf.src Makefile 951 $(do_subst) < $(srcdir)/tRNAscan-SE.conf.src > tRNAscan-SE.conf 952 chmod +x tRNAscan-SE.conf 953 954bin/sstofa: src/sstofa.in Makefile 955 $(do_subst) < $(srcdir)/src/sstofa.in > bin/sstofa 956 chmod +x bin/sstofa 957 958bin/fasta2gsi: src/fasta2gsi.in Makefile 959 $(do_subst) < $(srcdir)/src/fasta2gsi.in > bin/fasta2gsi 960 chmod +x bin/fasta2gsi 961 962bin/EukHighConfidenceFilter: EukHighConfidenceFilter.in Makefile 963 $(do_subst) < $(srcdir)/EukHighConfidenceFilter.in > bin/EukHighConfidenceFilter 964 chmod +x bin/EukHighConfidenceFilter 965 966# copy libraries. We don't have "libraries" in the libgmp.so.4 kind, but we do have data libraries, so we don't have to deal with lib_LTLIBRARIES. 967install-data-hook: 968 chmod u+w $(exec_prefix) 969 test -d $(libdir) || mkdir $(libdir) 970 chmod u+w $(libdir) 971 test -d $(libdir)/tRNAscan-SE || mkdir $(libdir)/tRNAscan-SE 972 cp -rf $(srcdir)/lib/* $(libdir)/tRNAscan-SE 973 974# remove lib/ files during uninstallation. A bit of a hack, since lib files are write-protected by default. Files 975uninstall-hook: 976 chmod -R u+w $(libdir)/tRNAscan-SE 977 rm -rf $(libdir)/tRNAscan-SE 978 979# Tell versions [3.59,3.63) of GNU make to not export all variables. 980# Otherwise a system limit (for SysV at least) may be exceeded. 981.NOEXPORT: 982