1 /** 2 * UGENE - Integrated Bioinformatics Tools. 3 * Copyright (C) 2008-2021 UniPro <ugene@unipro.ru> 4 * http://ugene.net 5 * 6 * This program is free software; you can redistribute it and/or 7 * modify it under the terms of the GNU General Public License 8 * as published by the Free Software Foundation; either version 2 9 * of the License, or (at your option) any later version. 10 * 11 * This program is distributed in the hope that it will be useful, 12 * but WITHOUT ANY WARRANTY; without even the implied warranty of 13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 14 * GNU General Public License for more details. 15 * 16 * You should have received a copy of the GNU General Public License 17 * along with this program; if not, write to the Free Software 18 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, 19 * MA 02110-1301, USA. 20 */ 21 22 #ifndef _U2_DOT_PLOT_DIALOG_H_ 23 #define _U2_DOT_PLOT_DIALOG_H_ 24 25 #include <ui_DotPlotDialog.h> 26 27 #include <QDialog> 28 29 #include <U2Algorithm/RepeatFinderSettings.h> 30 31 namespace U2 { 32 33 class ADVSequenceObjectContext; 34 class GObject; 35 class Document; 36 class AnnotatedDNAView; 37 class U2SequenceObject; 38 39 class DotPlotDialog : public QDialog, public Ui_DotPlotDialog { 40 Q_OBJECT 41 public: 42 DotPlotDialog(QWidget *parent, AnnotatedDNAView *currentADV, int minLen, int identity, ADVSequenceObjectContext *seqX, ADVSequenceObjectContext *seqY, bool dir, bool inv, const QColor &dColor = QColor(), const QColor &iColor = QColor(), bool hideLoadSequences = false); 43 44 virtual void accept(); 45 getXSeq()46 ADVSequenceObjectContext *getXSeq() const { 47 return xSeq; 48 } getYSeq()49 ADVSequenceObjectContext *getYSeq() const { 50 return ySeq; 51 } 52 53 int getMinLen() const; 54 int getMismatches() const; 55 RFAlgorithm getAlgo() const; 56 57 bool isDirect() const; 58 bool isInverted() const; 59 getDirectColor()60 const QColor &getDirectColor() const { 61 return directColor; 62 } getInvertedColor()63 const QColor &getInvertedColor() const { 64 return invertedColor; 65 } 66 67 protected slots: 68 void sl_minLenHeuristics(); 69 70 void sl_hundredPercent(); 71 72 void sl_directInvertedCheckBox(); 73 74 void sl_directColorButton(); 75 void sl_invertedColorButton(); 76 77 void sl_directDefaultColorButton(); 78 void sl_invertedDefaultColorButton(); 79 80 void sl_loadSequenceButton(); 81 82 void sl_loadTaskStateChanged(Task *t); 83 84 void sl_documentAddedOrRemoved(); 85 void sl_objectAddedOrRemoved(); 86 void sl_loadedStateChanged(); 87 88 void sl_sequenceSelectorIndexChanged(); 89 90 private: 91 void reconnectAllProjectDocuments(); 92 void updateSequenceSelectors(); 93 94 ADVSequenceObjectContext *xSeq, *ySeq; 95 AnnotatedDNAView *adv; 96 97 QColor directColor, invertedColor; 98 99 void updateColors(); 100 101 bool isObjectInADV(GObject *obj); 102 GObject *getGObjectByName(const QString &gObjectName); 103 104 Task *openSequenceTask; 105 }; 106 107 } // namespace U2 108 109 #endif 110