1 /**
2  * UGENE - Integrated Bioinformatics Tools.
3  * Copyright (C) 2008-2021 UniPro <ugene@unipro.ru>
4  * http://ugene.net
5  *
6  * This program is free software; you can redistribute it and/or
7  * modify it under the terms of the GNU General Public License
8  * as published by the Free Software Foundation; either version 2
9  * of the License, or (at your option) any later version.
10  *
11  * This program is distributed in the hope that it will be useful,
12  * but WITHOUT ANY WARRANTY; without even the implied warranty of
13  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14  * GNU General Public License for more details.
15  *
16  * You should have received a copy of the GNU General Public License
17  * along with this program; if not, write to the Free Software
18  * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
19  * MA 02110-1301, USA.
20  */
21 
22 #ifndef _U2_BOWTIE_SETTINGS_WIDGET_H_
23 #define _U2_BOWTIE_SETTINGS_WIDGET_H_
24 
25 #include "U2View/DnaAssemblyGUIExtension.h"
26 
27 #include "ui_BowtieBuildSettings.h"
28 #include "ui_BowtieSettings.h"
29 
30 namespace U2 {
31 
32 class BowtieSettingsWidget : public DnaAssemblyAlgorithmMainWidget, Ui_BowtieSettings {
33     Q_OBJECT
34 public:
35     BowtieSettingsWidget(QWidget *parent);
36     QMap<QString, QVariant> getDnaAssemblyCustomSettings() const;
37     bool isValidIndex(const QString &oneFileUrl) const;
38 };
39 
40 class BowtieBuildSettingsWidget : public DnaAssemblyAlgorithmBuildIndexWidget, Ui_BowtieBuildSettings {
41     Q_OBJECT
42 public:
43     BowtieBuildSettingsWidget(QWidget *parent);
44     virtual QMap<QString, QVariant> getBuildIndexCustomSettings();
45     virtual QString getIndexFileExtension();
46     virtual GUrl buildIndexUrl(const GUrl &url);
47 };
48 
49 class BowtieGUIExtensionsFactory : public DnaAssemblyGUIExtensionsFactory {
50     DnaAssemblyAlgorithmMainWidget *createMainWidget(QWidget *parent);
51     DnaAssemblyAlgorithmBuildIndexWidget *createBuildIndexWidget(QWidget *parent);
52     bool hasMainWidget();
53     bool hasBuildIndexWidget();
54 };
55 
56 }    // namespace U2
57 
58 #endif    // _U2_BOWTIE_SETTINGS_WIDGET_H_
59