1 /** 2 * UGENE - Integrated Bioinformatics Tools. 3 * Copyright (C) 2008-2021 UniPro <ugene@unipro.ru> 4 * http://ugene.net 5 * 6 * This program is free software; you can redistribute it and/or 7 * modify it under the terms of the GNU General Public License 8 * as published by the Free Software Foundation; either version 2 9 * of the License, or (at your option) any later version. 10 * 11 * This program is distributed in the hope that it will be useful, 12 * but WITHOUT ANY WARRANTY; without even the implied warranty of 13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 14 * GNU General Public License for more details. 15 * 16 * You should have received a copy of the GNU General Public License 17 * along with this program; if not, write to the Free Software 18 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, 19 * MA 02110-1301, USA. 20 */ 21 22 #ifndef _U2_BOWTIE_SETTINGS_WIDGET_H_ 23 #define _U2_BOWTIE_SETTINGS_WIDGET_H_ 24 25 #include "U2View/DnaAssemblyGUIExtension.h" 26 27 #include "ui_BowtieBuildSettings.h" 28 #include "ui_BowtieSettings.h" 29 30 namespace U2 { 31 32 class BowtieSettingsWidget : public DnaAssemblyAlgorithmMainWidget, Ui_BowtieSettings { 33 Q_OBJECT 34 public: 35 BowtieSettingsWidget(QWidget *parent); 36 QMap<QString, QVariant> getDnaAssemblyCustomSettings() const; 37 bool isValidIndex(const QString &oneFileUrl) const; 38 }; 39 40 class BowtieBuildSettingsWidget : public DnaAssemblyAlgorithmBuildIndexWidget, Ui_BowtieBuildSettings { 41 Q_OBJECT 42 public: 43 BowtieBuildSettingsWidget(QWidget *parent); 44 virtual QMap<QString, QVariant> getBuildIndexCustomSettings(); 45 virtual QString getIndexFileExtension(); 46 virtual GUrl buildIndexUrl(const GUrl &url); 47 }; 48 49 class BowtieGUIExtensionsFactory : public DnaAssemblyGUIExtensionsFactory { 50 DnaAssemblyAlgorithmMainWidget *createMainWidget(QWidget *parent); 51 DnaAssemblyAlgorithmBuildIndexWidget *createBuildIndexWidget(QWidget *parent); 52 bool hasMainWidget(); 53 bool hasBuildIndexWidget(); 54 }; 55 56 } // namespace U2 57 58 #endif // _U2_BOWTIE_SETTINGS_WIDGET_H_ 59