1 /** 2 * UGENE - Integrated Bioinformatics Tools. 3 * Copyright (C) 2008-2021 UniPro <ugene@unipro.ru> 4 * http://ugene.net 5 * 6 * This program is free software; you can redistribute it and/or 7 * modify it under the terms of the GNU General Public License 8 * as published by the Free Software Foundation; either version 2 9 * of the License, or (at your option) any later version. 10 * 11 * This program is distributed in the hope that it will be useful, 12 * but WITHOUT ANY WARRANTY; without even the implied warranty of 13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 14 * GNU General Public License for more details. 15 * 16 * You should have received a copy of the GNU General Public License 17 * along with this program; if not, write to the Free Software 18 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, 19 * MA 02110-1301, USA. 20 */ 21 22 #ifndef _U2_GENOME_ALIGNER_WORKER_H_ 23 #define _U2_GENOME_ALIGNER_WORKER_H_ 24 25 #include <U2Lang/LocalDomain.h> 26 #include <U2Lang/WorkflowUtils.h> 27 28 #include "GenomeAlignerIO.h" 29 #include "GenomeAlignerTask.h" 30 31 namespace U2 { 32 namespace LocalWorkflow { 33 34 class GenomeAlignerPrompter : public PrompterBase<GenomeAlignerPrompter> { 35 Q_OBJECT 36 public: 37 GenomeAlignerPrompter(Actor *p = 0) 38 : PrompterBase<GenomeAlignerPrompter>(p) { 39 } 40 41 protected: 42 QString composeRichDoc(); 43 }; 44 45 class GenomeAlignerWorker : public BaseWorker { 46 Q_OBJECT 47 public: 48 GenomeAlignerWorker(Actor *a); 49 virtual void init(); 50 virtual Task *tick(); 51 virtual void cleanup(); 52 private slots: 53 void sl_taskFinished(); 54 55 private: 56 DnaAssemblyToRefTaskSettings getSettings(U2OpStatus &os); 57 58 protected: 59 IntegralBus *inChannel; 60 IntegralBus *output; 61 }; 62 63 class GenomeAlignerWorkerFactory : public DomainFactory { 64 public: 65 static const QString ACTOR_ID; 66 static void init(); GenomeAlignerWorkerFactory()67 GenomeAlignerWorkerFactory() 68 : DomainFactory(ACTOR_ID) { 69 } createWorker(Actor * a)70 virtual Worker *createWorker(Actor *a) { 71 return new GenomeAlignerWorker(a); 72 } 73 static bool openclEnabled; 74 }; 75 76 } // namespace LocalWorkflow 77 } // namespace U2 78 79 #endif // GENOME_ALIGNER_WORKER 80