1<multi-test> 2 <remove-temp-dir url="bowtie2_5"/> 3 <create-temp-dir url="bowtie2_5"/> 4 <load-document index="doc" url="/bowtie2/lambda_virus.fa" io="local_file" format="fasta"/> 5 <save-document doc="doc" url="_tempRef5.fa" io="local_file" format="fasta"/> 6 <run-cmdline 7 task="!common_data_dir!bowtie2/aligner_worker/bowtie2-aligner.uwl" 8 in="!common_data_dir!bowtie2/reads_1.fq" 9 out-dir="!tmp_data_dir!bowtie2_5" 10 ref="!tmp_data_dir!_tempRef5.fa" 11 mode="--local" 12 mismatches="0" 13 seed-length="20" 14 dpad="15" 15 gbar="4" 16 seed="0" 17 /> 18 <compare-two-sams-by-length file1="bowtie2_5/bowtie/out.sam" file2="bowtie2/aligner_worker/pattern1_local.sam" file3="bowtie2/aligner_worker/pattern1_local_twin.sam"/> 19 <remove-temp-dir url="bowtie2_5"/> 20</multi-test> 21