1% NORMALIZE-IHS(1) normalize-iHS (vcflib) | normalize-iHS (VCF genotype) 2% Erik Garrison and vcflib contributors 3 4# NAME 5 6**normalize-iHS** 7 8# SYNOPSIS 9 10normalizeHS -s 0.01 -f input.txt 11 12# DESCRIPTION 13 14normalizes iHS or XP-EHH scores. 15 16 17 18# OPTIONS 19 20``` 21 22 23 24 25A cross-population extended haplotype homozygosity (XP-EHH) score is 26directional: a positive score suggests selection is likely to have 27happened in population A, whereas a negative score suggests the same 28about population B. See for example 29https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2687721/ 30 31 32Output : **normalize-iHS** adds one additional column to input (normalized score). 33required: -f -- Output from iHS or XPEHH 34optional: -s -- Max AF diff for window [0.01] 35 36Type: genotype 37 38 39 40``` 41 42 43 44 45 46# EXIT VALUES 47 48**0** 49: Success 50 51**not 0** 52: Failure 53 54# SEE ALSO 55 56 57 58[vcflib](./vcflib.md)(1) 59 60 61 62# OTHER 63 64## Source code 65 66[normalize-iHS.cpp](https://github.com/vcflib/vcflib/blob/master/src/normalize-iHS.cpp) 67 68# LICENSE 69 70Copyright 2011-2020 (C) Erik Garrison and vcflib contributors. MIT licensed. 71 72<!-- 73 Created with ./scripts/bin2md.rb scripts/bin2md-template.erb 74--> 75