1\hypertarget{group__struct__utils__helix__list}{}\doxysection{Helix List Representation of Secondary Structures} 2\label{group__struct__utils__helix__list}\index{Helix List Representation of Secondary Structures@{Helix List Representation of Secondary Structures}} 3 4 5\doxysubsection{Detailed Description} 6Collaboration diagram for Helix List Representation of Secondary Structures\+: 7\nopagebreak 8\begin{figure}[H] 9\begin{center} 10\leavevmode 11\includegraphics[width=349pt]{group__struct__utils__helix__list} 12\end{center} 13\end{figure} 14\doxysubsection*{Data Structures} 15\begin{DoxyCompactItemize} 16\item 17struct \mbox{\hyperlink{group__struct__utils__helix__list_structvrna__hx__s}{vrna\+\_\+hx\+\_\+s}} 18\begin{DoxyCompactList}\small\item\em Data structure representing an entry of a helix list. \mbox{\hyperlink{group__struct__utils__helix__list_structvrna__hx__s}{More...}}\end{DoxyCompactList}\end{DoxyCompactItemize} 19\doxysubsection*{Typedefs} 20\begin{DoxyCompactItemize} 21\item 22\mbox{\Hypertarget{group__struct__utils__helix__list_ga877363f3a1703b53ecd025c6fcf897a0}\label{group__struct__utils__helix__list_ga877363f3a1703b53ecd025c6fcf897a0}} 23typedef struct \mbox{\hyperlink{group__struct__utils__helix__list_structvrna__hx__s}{vrna\+\_\+hx\+\_\+s}} \mbox{\hyperlink{group__struct__utils__helix__list_ga877363f3a1703b53ecd025c6fcf897a0}{vrna\+\_\+hx\+\_\+t}} 24\begin{DoxyCompactList}\small\item\em Convenience typedef for data structure \mbox{\hyperlink{group__struct__utils__helix__list_structvrna__hx__s}{vrna\+\_\+hx\+\_\+s}}. \end{DoxyCompactList}\end{DoxyCompactItemize} 25\doxysubsection*{Functions} 26\begin{DoxyCompactItemize} 27\item 28\mbox{\hyperlink{group__struct__utils__helix__list_ga877363f3a1703b53ecd025c6fcf897a0}{vrna\+\_\+hx\+\_\+t}} $\ast$ \mbox{\hyperlink{group__struct__utils__helix__list_ga7ca60670fbbf23ae2ac9f63e5dbf8aef}{vrna\+\_\+hx\+\_\+from\+\_\+ptable}} (short $\ast$pt) 29\begin{DoxyCompactList}\small\item\em Convert a pair table representation of a secondary structure into a helix list. \end{DoxyCompactList}\item 30\mbox{\Hypertarget{group__struct__utils__helix__list_ga2fdaac8bb6c239c119ad5c20b145b7f2}\label{group__struct__utils__helix__list_ga2fdaac8bb6c239c119ad5c20b145b7f2}} 31\mbox{\hyperlink{group__struct__utils__helix__list_ga877363f3a1703b53ecd025c6fcf897a0}{vrna\+\_\+hx\+\_\+t}} $\ast$ \mbox{\hyperlink{group__struct__utils__helix__list_ga2fdaac8bb6c239c119ad5c20b145b7f2}{vrna\+\_\+hx\+\_\+merge}} (const \mbox{\hyperlink{group__struct__utils__helix__list_ga877363f3a1703b53ecd025c6fcf897a0}{vrna\+\_\+hx\+\_\+t}} $\ast$list, int maxdist) 32\begin{DoxyCompactList}\small\item\em Create a merged helix list from another helix list. \end{DoxyCompactList}\end{DoxyCompactItemize} 33 34 35\doxysubsection{Data Structure Documentation} 36\index{vrna\_hx\_s@{vrna\_hx\_s}}\label{structvrna__hx__s} 37\Hypertarget{group__struct__utils__helix__list_structvrna__hx__s} 38\doxysubsubsection{struct vrna\+\_\+hx\+\_\+s} 39Data structure representing an entry of a helix list. 40 41\doxysubsection{Function Documentation} 42\mbox{\Hypertarget{group__struct__utils__helix__list_ga7ca60670fbbf23ae2ac9f63e5dbf8aef}\label{group__struct__utils__helix__list_ga7ca60670fbbf23ae2ac9f63e5dbf8aef}} 43\index{Helix List Representation of Secondary Structures@{Helix List Representation of Secondary Structures}!vrna\_hx\_from\_ptable@{vrna\_hx\_from\_ptable}} 44\index{vrna\_hx\_from\_ptable@{vrna\_hx\_from\_ptable}!Helix List Representation of Secondary Structures@{Helix List Representation of Secondary Structures}} 45\doxysubsubsection{\texorpdfstring{vrna\_hx\_from\_ptable()}{vrna\_hx\_from\_ptable()}} 46{\footnotesize\ttfamily \mbox{\hyperlink{group__struct__utils__helix__list_ga877363f3a1703b53ecd025c6fcf897a0}{vrna\+\_\+hx\+\_\+t}}$\ast$ vrna\+\_\+hx\+\_\+from\+\_\+ptable (\begin{DoxyParamCaption}\item[{short $\ast$}]{pt }\end{DoxyParamCaption})} 47 48 49 50{\ttfamily \#include $<$\mbox{\hyperlink{utils_2structures_8h}{Vienna\+RNA/utils/structures.\+h}}$>$} 51 52 53 54Convert a pair table representation of a secondary structure into a helix list. 55 56 57\begin{DoxyParams}{Parameters} 58{\em pt} & The secondary structure in pair table representation \\ 59\hline 60\end{DoxyParams} 61\begin{DoxyReturn}{Returns} 62The secondary structure represented as a helix list 63\end{DoxyReturn} 64