1\hypertarget{group__struct__utils__helix__list}{}\doxysection{Helix List Representation of Secondary Structures}
2\label{group__struct__utils__helix__list}\index{Helix List Representation of Secondary Structures@{Helix List Representation of Secondary Structures}}
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5\doxysubsection{Detailed Description}
6Collaboration diagram for Helix List Representation of Secondary Structures\+:
7\nopagebreak
8\begin{figure}[H]
9\begin{center}
10\leavevmode
11\includegraphics[width=349pt]{group__struct__utils__helix__list}
12\end{center}
13\end{figure}
14\doxysubsection*{Data Structures}
15\begin{DoxyCompactItemize}
16\item
17struct \mbox{\hyperlink{group__struct__utils__helix__list_structvrna__hx__s}{vrna\+\_\+hx\+\_\+s}}
18\begin{DoxyCompactList}\small\item\em Data structure representing an entry of a helix list.  \mbox{\hyperlink{group__struct__utils__helix__list_structvrna__hx__s}{More...}}\end{DoxyCompactList}\end{DoxyCompactItemize}
19\doxysubsection*{Typedefs}
20\begin{DoxyCompactItemize}
21\item
22\mbox{\Hypertarget{group__struct__utils__helix__list_ga877363f3a1703b53ecd025c6fcf897a0}\label{group__struct__utils__helix__list_ga877363f3a1703b53ecd025c6fcf897a0}}
23typedef struct \mbox{\hyperlink{group__struct__utils__helix__list_structvrna__hx__s}{vrna\+\_\+hx\+\_\+s}} \mbox{\hyperlink{group__struct__utils__helix__list_ga877363f3a1703b53ecd025c6fcf897a0}{vrna\+\_\+hx\+\_\+t}}
24\begin{DoxyCompactList}\small\item\em Convenience typedef for data structure \mbox{\hyperlink{group__struct__utils__helix__list_structvrna__hx__s}{vrna\+\_\+hx\+\_\+s}}. \end{DoxyCompactList}\end{DoxyCompactItemize}
25\doxysubsection*{Functions}
26\begin{DoxyCompactItemize}
27\item
28\mbox{\hyperlink{group__struct__utils__helix__list_ga877363f3a1703b53ecd025c6fcf897a0}{vrna\+\_\+hx\+\_\+t}} $\ast$ \mbox{\hyperlink{group__struct__utils__helix__list_ga7ca60670fbbf23ae2ac9f63e5dbf8aef}{vrna\+\_\+hx\+\_\+from\+\_\+ptable}} (short $\ast$pt)
29\begin{DoxyCompactList}\small\item\em Convert a pair table representation of a secondary structure into a helix list. \end{DoxyCompactList}\item
30\mbox{\Hypertarget{group__struct__utils__helix__list_ga2fdaac8bb6c239c119ad5c20b145b7f2}\label{group__struct__utils__helix__list_ga2fdaac8bb6c239c119ad5c20b145b7f2}}
31\mbox{\hyperlink{group__struct__utils__helix__list_ga877363f3a1703b53ecd025c6fcf897a0}{vrna\+\_\+hx\+\_\+t}} $\ast$ \mbox{\hyperlink{group__struct__utils__helix__list_ga2fdaac8bb6c239c119ad5c20b145b7f2}{vrna\+\_\+hx\+\_\+merge}} (const \mbox{\hyperlink{group__struct__utils__helix__list_ga877363f3a1703b53ecd025c6fcf897a0}{vrna\+\_\+hx\+\_\+t}} $\ast$list, int maxdist)
32\begin{DoxyCompactList}\small\item\em Create a merged helix list from another helix list. \end{DoxyCompactList}\end{DoxyCompactItemize}
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35\doxysubsection{Data Structure Documentation}
36\index{vrna\_hx\_s@{vrna\_hx\_s}}\label{structvrna__hx__s}
37\Hypertarget{group__struct__utils__helix__list_structvrna__hx__s}
38\doxysubsubsection{struct vrna\+\_\+hx\+\_\+s}
39Data structure representing an entry of a helix list.
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41\doxysubsection{Function Documentation}
42\mbox{\Hypertarget{group__struct__utils__helix__list_ga7ca60670fbbf23ae2ac9f63e5dbf8aef}\label{group__struct__utils__helix__list_ga7ca60670fbbf23ae2ac9f63e5dbf8aef}}
43\index{Helix List Representation of Secondary Structures@{Helix List Representation of Secondary Structures}!vrna\_hx\_from\_ptable@{vrna\_hx\_from\_ptable}}
44\index{vrna\_hx\_from\_ptable@{vrna\_hx\_from\_ptable}!Helix List Representation of Secondary Structures@{Helix List Representation of Secondary Structures}}
45\doxysubsubsection{\texorpdfstring{vrna\_hx\_from\_ptable()}{vrna\_hx\_from\_ptable()}}
46{\footnotesize\ttfamily \mbox{\hyperlink{group__struct__utils__helix__list_ga877363f3a1703b53ecd025c6fcf897a0}{vrna\+\_\+hx\+\_\+t}}$\ast$ vrna\+\_\+hx\+\_\+from\+\_\+ptable (\begin{DoxyParamCaption}\item[{short $\ast$}]{pt }\end{DoxyParamCaption})}
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50{\ttfamily \#include $<$\mbox{\hyperlink{utils_2structures_8h}{Vienna\+RNA/utils/structures.\+h}}$>$}
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54Convert a pair table representation of a secondary structure into a helix list.
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57\begin{DoxyParams}{Parameters}
58{\em pt} & The secondary structure in pair table representation \\
59\hline
60\end{DoxyParams}
61\begin{DoxyReturn}{Returns}
62The secondary structure represented as a helix list
63\end{DoxyReturn}
64