Name | Date | Size | #Lines | LOC | ||
---|---|---|---|---|---|---|
.. | 03-May-2022 | - | ||||
snakemake/ | H | 03-May-2022 | - | 32,714 | 26,902 | |
snakemake.egg-info/ | H | 03-May-2022 | - | 26 | 23 | |
LICENSE.md | H A D | 29-Nov-2021 | 1.1 KiB | 20 | 16 | |
MANIFEST.in | H A D | 29-Nov-2021 | 71 | 4 | 3 | |
PKG-INFO | H A D | 29-Nov-2021 | 1.1 KiB | 26 | 23 | |
README.md | H A D | 29-Nov-2021 | 2.3 KiB | 24 | 19 | |
setup.cfg | H A D | 29-Nov-2021 | 177 | 12 | 9 | |
setup.py | H A D | 29-Nov-2021 | 2.9 KiB | 104 | 93 | |
versioneer.py | H A D | 29-Nov-2021 | 67 KiB | 1,823 | 1,415 |
README.md
1[![Gitpod Ready-to-Code](https://img.shields.io/badge/Gitpod-ready--to--code-blue?logo=gitpod)](https://gitpod.io/#https://github.com/snakemake/snakemake) 2[![test status](https://github.com/snakemake/snakemake/workflows/CI/badge.svg?branch=main)](https://github.com/snakemake/snakemake/actions?query=branch%3Amain+workflow%3ACI) 3[![Sonarcloud Status](https://sonarcloud.io/api/project_badges/measure?project=snakemake_snakemake&metric=alert_status)](https://sonarcloud.io/dashboard?id=snakemake_snakemake) 4[![Bioconda](https://img.shields.io/conda/dn/bioconda/snakemake.svg?label=Bioconda)](https://bioconda.github.io/recipes/snakemake/README.html) 5[![Pypi](https://img.shields.io/pypi/pyversions/snakemake.svg)](https://pypi.org/project/snakemake) 6[![docker container status](https://img.shields.io/github/workflow/status/snakemake/snakemake/Publish%20to%20Docker%20Hub?color=blue&label=docker%20container)](https://hub.docker.com/r/snakemake/snakemake) 7[![Stack Overflow](https://img.shields.io/badge/stack-overflow-orange.svg)](https://stackoverflow.com/questions/tagged/snakemake) 8[![Twitter](https://img.shields.io/twitter/follow/johanneskoester.svg?style=social&label=Follow)](https://twitter.com/search?l=&q=%23snakemake%20from%3Ajohanneskoester) 9[![Discord](https://img.shields.io/discord/753690260830945390?label=discord%20chat)](https://discord.gg/NUdMtmr) 10[![Github stars](https://img.shields.io/github/stars/snakemake/snakemake?style=social)](https://github.com/snakemake/snakemake/stargazers) 11[![Contributor Covenant](https://img.shields.io/badge/Contributor%20Covenant-v2.0%20adopted-ff69b4.svg)](CODE_OF_CONDUCT.md) 12 13# Snakemake 14 15The Snakemake workflow management system is a tool to create **reproducible and scalable** data analyses. 16Snakemake is highly popular, with on average more than 6 new citations per week, and over 200k downloads. 17Workflows are described via a human readable, Python based language. 18They can be seamlessly scaled to server, cluster, grid and cloud environments without the need to modify the workflow definition. 19Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment. 20 21**Homepage: https://snakemake.github.io** 22 23Copyright (c) 2012-2021 Johannes Köster <johannes.koester@uni-due.com> (see LICENSE) 24