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snakemake/H03-May-2022-32,71426,902

snakemake.egg-info/H03-May-2022-2623

LICENSE.mdH A D29-Nov-20211.1 KiB2016

MANIFEST.inH A D29-Nov-202171 43

PKG-INFOH A D29-Nov-20211.1 KiB2623

README.mdH A D29-Nov-20212.3 KiB2419

setup.cfgH A D29-Nov-2021177 129

setup.pyH A D29-Nov-20212.9 KiB10493

versioneer.pyH A D29-Nov-202167 KiB1,8231,415

README.md

1[![Gitpod Ready-to-Code](https://img.shields.io/badge/Gitpod-ready--to--code-blue?logo=gitpod)](https://gitpod.io/#https://github.com/snakemake/snakemake)
2[![test status](https://github.com/snakemake/snakemake/workflows/CI/badge.svg?branch=main)](https://github.com/snakemake/snakemake/actions?query=branch%3Amain+workflow%3ACI)
3[![Sonarcloud Status](https://sonarcloud.io/api/project_badges/measure?project=snakemake_snakemake&metric=alert_status)](https://sonarcloud.io/dashboard?id=snakemake_snakemake)
4[![Bioconda](https://img.shields.io/conda/dn/bioconda/snakemake.svg?label=Bioconda)](https://bioconda.github.io/recipes/snakemake/README.html)
5[![Pypi](https://img.shields.io/pypi/pyversions/snakemake.svg)](https://pypi.org/project/snakemake)
6[![docker container status](https://img.shields.io/github/workflow/status/snakemake/snakemake/Publish%20to%20Docker%20Hub?color=blue&label=docker%20container)](https://hub.docker.com/r/snakemake/snakemake)
7[![Stack Overflow](https://img.shields.io/badge/stack-overflow-orange.svg)](https://stackoverflow.com/questions/tagged/snakemake)
8[![Twitter](https://img.shields.io/twitter/follow/johanneskoester.svg?style=social&label=Follow)](https://twitter.com/search?l=&q=%23snakemake%20from%3Ajohanneskoester)
9[![Discord](https://img.shields.io/discord/753690260830945390?label=discord%20chat)](https://discord.gg/NUdMtmr)
10[![Github stars](https://img.shields.io/github/stars/snakemake/snakemake?style=social)](https://github.com/snakemake/snakemake/stargazers)
11[![Contributor Covenant](https://img.shields.io/badge/Contributor%20Covenant-v2.0%20adopted-ff69b4.svg)](CODE_OF_CONDUCT.md)
12
13# Snakemake
14
15The Snakemake workflow management system is a tool to create **reproducible and scalable** data analyses.
16Snakemake is highly popular, with on average more than 6 new citations per week, and over 200k downloads.
17Workflows are described via a human readable, Python based language.
18They can be seamlessly scaled to server, cluster, grid and cloud environments without the need to modify the workflow definition.
19Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment.
20
21**Homepage: https://snakemake.github.io**
22
23Copyright (c) 2012-2021 Johannes Köster <johannes.koester@uni-due.com> (see LICENSE)
24