1# -c
2
3feedback enable, isosurface, blather
4feedback enable, isomesh, blather
5
6print "BEGIN-LOG"
7
8load dat/pept.pdb,obj
9load dat/il2.pdb,obj
10load dat/3al1.pdb,obj,state=4
11
12# all states one giant map
13map_new tst1,gaussian,1.0,state=-3
14
15# selected states
16map_new tst2,gaussian,1.0,state=2
17map_new tst2,gaussian,1.0,state=4
18
19# independent states in one extent
20map_new tst3,gaussian,1.0,state=-4
21
22# selected empty state
23map_new tst4,gaussian,1.0,state=3
24
25# selected single state
26map_new tst5,gaussian,1.0,state=4
27
28# indepenent states in independent extents
29map_new tst6,gaussian,1.0
30
31frame 4
32isomesh m8,tst2,state=-1
33
34frame 3
35isomesh m9,tst1,state=-1,source_state=1
36
37isomesh m7,tst1,state=4,source_state=1
38refresh
39isomesh m7,tst6,state=3,source_state=1
40refresh
41isomesh m7,tst5,state=2,source_state=4
42refresh
43isomesh m7,tst2,state=1,source_state=2
44refresh
45
46isomesh m1,tst1
47refresh
48isomesh m2,tst2
49refresh
50isomesh m3,tst3
51refresh
52
53isomesh m4,tst4
54refresh
55isomesh m5a,tst5,source_state=1
56refresh
57isomesh m5b,tst5
58
59isomesh m6,tst6
60
61isosurface s1,tst1
62refresh
63isosurface s2,tst2
64refresh
65isosurface s3,tst3
66refresh
67isosurface s4,tst4
68refresh
69isosurface s4,tst5
70refresh
71isosurface s5a,tst5,source_state=1
72refresh
73isosurface s5b,tst5
74
75isosurface s6,tst6
76
77isosurface s7,tst1,state=4,source_state=1
78refresh
79isosurface s7,tst6,state=3,source_state=1
80refresh
81isosurface s7,tst5,state=2,source_state=4
82refresh
83isosurface s7,tst2,state=1,source_state=2
84refresh
85
86frame 4
87isosurface s8,tst2,state=-1
88
89frame 3
90isosurface s9,tst1,state=-1,source_state=1
91
92
93reinit
94load dat/pept.pdb,obj
95alter all, b=10
96map_new m1, gaussian, 1.0, obj
97map_new m2, gaussian, 1.0, obj, clamp=[-5, 5]
98map_new m3, gaussian, 1.0, obj, clamp=[-3, 3]
99map_new m4, gaussian, 1.0, obj, clamp=[-2, 2]
100map_new m5, gaussian, 1.0, obj, clamp=[-0.9, 0.9]
101isosurface s1, m1
102isosurface s2, m2
103isosurface s3, m3
104isosurface s4, m4
105isosurface s5, m5
106ray renderer=2
107
108print "END-LOG"