1    22  Alanine Dipeptide // CHARMM22 C5 Minimum
2     1  CT3   -2.250691   -0.851915   -0.083925    27     2     4     5     6
3     2  C     -0.787687   -1.077344   -0.086013    20     1     3     7
4     3  O     -0.318160   -2.185760    0.131822    74     2
5     4  HA    -2.769422   -1.808779    0.142330     1     1
6     5  HA    -2.583345   -0.489461   -1.079309     1     1
7     6  HA    -2.521754   -0.104193    0.690918     1     1
8     7  NH1   -0.023620   -0.010277   -0.330829    63     2     8    11
9     8  CT1    1.415774   -0.071172   -0.366390    23     7     9    12    13
10     9  C      1.947065    1.331601   -0.144589    20     8    10    17
11    10  O      1.201867    2.306210   -0.226132    74     9
12    11  H     -0.417141    0.893285   -0.477978     3     7
13    12  HB     1.762231   -0.687579    0.453417     4     8
14    13  CT3    1.922193   -0.623619   -1.717485    27     8    14    15    16
15    14  HA     1.564375    0.010735   -2.556340     1    13
16    15  HA     3.030116   -0.671989   -1.748218     1    13
17    16  HA     1.525138   -1.651071   -1.868600     1    13
18    17  NH1    3.252036    1.464189    0.164397    63     9    18    19
19    18  CT3    3.843862    2.759667    0.404521    61    17    20    21    22
20    19  H      3.837098    0.662772    0.232705     3    17
21    20  HA     4.925963    2.659765    0.641852     1    18
22    21  HA     3.342899    3.267982    1.260029     1    18
23    22  HA     3.740393    3.411535   -0.492999     1    18
24