Lines Matching refs:textright
903 int middlelength, cL, cR, mincR, maxcR, leftbound, rightbound, textleft, textright, in Dynprog_microexon_int() local
1079 textright = rev_goffsetR - cR - MICROINTRON_LENGTH; in Dynprog_microexon_int()
1081 if (textright >= textleft + middlelength) { in Dynprog_microexon_int()
1082 hits = BoyerMoore_nt(&(rsequence[cL]),middlelength,textleft,textright-textleft, in Dynprog_microexon_int()
1085 … hits_old = BoyerMoore(&(rsequenceuc[cL]),middlelength,&(genomicuc[textleft]),textright-textleft); in Dynprog_microexon_int()
1216 int endlength, maxc, c, textleft, textright, candidate, nmismatches = 0;
1287 textright = rev_goffset - c - MICROINTRON_LENGTH;
1288 … textleft = textright - search_length(endlength,textright,end_microexons_p) + MICROINTRON_LENGTH;
1290 if (textright >= textleft + endlength) {
1291 hits = BoyerMoore_nt(&(rev_rsequence[-c-endlength+1]),endlength,textleft,textright-textleft,
1332 int endlength, maxc, c, textleft, textright, candidate, nmismatches = 0;
1403 textright = textleft + search_length(endlength,genomiclength-textleft,end_microexons_p);
1405 if (textright >= textleft + endlength) {
1406 hits = BoyerMoore_nt(&(rsequence[c]),endlength,textleft,textright-textleft,