159 void Individual::AddHaplotype(long regnum, string lname, long marker,  in AddHaplotype()  argument
163     hap = m_haplotypesmap.find(make_pair(lname, marker));  in AddHaplotype()
166         Haplotypes haplo(regnum, lname);  in AddHaplotype()
167         m_haplotypesmap.insert(make_pair(make_pair(lname, marker),haplo));  in AddHaplotype()
168         hap = m_haplotypesmap.find(make_pair(lname, marker));  in AddHaplotype()
175 StringVec1d Individual::GetAllelesFor(string lname, long marker) const  in GetAllelesFor()  argument
178     hap = m_haplotypesmap.find(make_pair(lname, marker));  in GetAllelesFor()
191 vector<LocusCell> Individual::GetLocusCellsFor(string lname, long marker) const  in GetLocusCellsFor()  argument
194     hap = m_currentHapsMap.find(make_pair(lname, marker));  in GetLocusCellsFor()
199         string msg = "Can't find haplotypes for locus " + lname  in GetLocusCellsFor()
209 Haplotypes Individual::GetHaplotypesFor(string lname, long marker) const  in GetHaplotypesFor()  argument
212     hap = m_haplotypesmap.find(make_pair(lname, marker));  in GetHaplotypesFor()
217         string msg = "Can't find haplotypes for segment " + lname  in GetHaplotypesFor()
227 string Individual::GetMarkerDataFor(string lname, long marker) const  in GetMarkerDataFor()  argument
230     hap = m_haplotypesmap.find(make_pair(lname, marker));  in GetMarkerDataFor()
240 void Individual::ChooseNewHaplotypesFor(string lname, long marker)  in ChooseNewHaplotypesFor()  argument
243     pair<string, long> tag = make_pair(lname, marker);  in ChooseNewHaplotypesFor()
249                                    lname + ".");  in ChooseNewHaplotypesFor()
269 bool Individual::ChooseRandomHaplotypesFor(string lname, long marker)  in ChooseRandomHaplotypesFor()  argument
272     pair<string, long> tag = make_pair(lname, marker);  in ChooseRandomHaplotypesFor()
277         throw implementation_error("Can't choose a haplotype for locus" + lname + ".");  in ChooseRandomHaplotypesFor()
306 void Individual::ChooseFirstHaplotypeFor(string lname, long marker)  in ChooseFirstHaplotypeFor()  argument
309     pair<string, long> tag = make_pair(lname, marker);  in ChooseFirstHaplotypeFor()
314         string msg("Can't choose a haplotype for segment" + lname + ".");  in ChooseFirstHaplotypeFor()
322 bool Individual::ChooseNextHaplotypeFor(string lname, long marker)  in ChooseNextHaplotypeFor()  argument
325     pair<string, long> tag = make_pair(lname, marker);  in ChooseNextHaplotypeFor()
330         string msg("Can't choose a haplotype for segment" + lname + ".");  in ChooseNextHaplotypeFor()
346 void Individual::SetHaplotypes(string lname, long marker, Haplotypes haps)  in SetHaplotypes()  argument
349     pair<string, long> whichlocus = make_pair(lname, marker);  in SetHaplotypes()
358     ChooseFirstHaplotypeFor(lname, marker);  in SetHaplotypes()