• Home
  • History
  • Annotate
Name Date Size #Lines LOC

..03-May-2022-

boost/H29-May-2012-592,988438,917

config/H29-May-2012-4,5213,559

doc/H29-May-2012-12,01611,749

resources/H03-May-2022-6855

scripts/pyParallel/H29-May-2012-726434

src/H29-May-2012-152,834108,993

tinyxml/H03-May-2022-9,6186,847

wxWidgets/H03-May-2022-

CONTENTSH A D14-May-20123.4 KiB7262

COPYINGH A D20-Mar-20062.2 KiB5847

HISTORYH A D25-May-20123.5 KiB9174

INSTALLH A D17-Sep-200758 31

Makefile.amH A D29-May-201241.2 KiB1,3191,111

Makefile.inH A D03-May-2022938.7 KiB8,5197,565

READMEH A D25-May-20122.2 KiB5845

aclocal.m4H A D24-May-201232.1 KiB892797

configureH A D03-May-2022230.5 KiB8,1446,771

configure.acH A D24-May-201219 KiB505441

depcompH A D20-Apr-200414.5 KiB521331

install-shH A D19-Apr-20049 KiB317185

missingH A D20-Apr-200410.4 KiB361270

README

1Lamarc 2.1.8
2May 29 2012
3===============
4
5A program to estimate population parameters from genetic data.  All
6parameters are estimated jointly.  Currently the program allows estimation
7of population sizes, recombination rate, migration rates, and growth
8rates, and can estimate the location of a trait allele.
9
10This version is a new release and bug fix update to
11version 2.1.6 (January 2011).
12
13DOCUMENTATION & GETTING HELP
14============================
15
16Extensive documentation is available in the doc/ subdirectory of
17your lamarc distribution.  You will likely wish to begin with
18the HTML documentation available in doc/html/index.html .
19
20Careful reading of the documentation will be necessary to obtain
21a high quality lamarc analysis of your data.  As the program user,
22you will need to make decisions such as
23    * which evolutionary forces to model,
24    * which mutational model to assume for your data, and
25    * how long to run the program.
26Please note that there may be specific documentation sections
27relevant to your particular data type, such as viral data, or
28phase unresolved data.
29
30The most up-to-date information on Lamarc is available at the project
31website http://evolution.gs.washington.edu/lamarc/
32
33If, after reading the relevant documentation, you still have questions,
34please email the lamarc developers at:
35
36    lamarc@u.washington.edu
37
38BINARY DISTRIBUTIONS:
39=====================
40If you have downloaded a binary distribution (executables) you are all
41set and the programs "lamarc" and "lam_conv" are in the same directory
42as this README.
43
44Linux users--you may recieve a cryptic sounding error message concerning
45"libstdc++.so.6" or something similar.  In order to run lamarc you
46will need to either get the lamarc source distribution and compile
47it on your computer, or you will need to install some variant of
48version 6 of the standard c++ shared library.  Debian users with
49"apt" installed can use "apt-get install libstdc++6" to get the needed
50library.
51
52SOURCE DISTRIBUTIONS:
53=====================
54If you have downloaded the source and have a *UNIX* system (LINUX,
55BSD, MACOSX, SOLARIS, TRU64, etc) see doc/html/compiling.html for
56directions to build "lamarc" and "lam_conv".
57
58