264 int             *compCharPos;                /* char position in compressed matrix           */  variable
1607     posit = m->rateProbStart + (compCharPos[c] - m->compCharStart) * m->numRateCats;  in CalcLikeAdgamma()
1620     logScaler = lnScaler[compCharPos[c]] +  log(max);  in CalcLikeAdgamma()
1647         posit = m->rateProbStart + (compCharPos[c] - m->compCharStart) * m->numRateCats;  in CalcLikeAdgamma()
1695         logScaler += lnScaler[compCharPos[c]] +  log(max);  in CalcLikeAdgamma()
10707         i = compCharPos[c] - m->compCharStart;  in PrintAncStates_Bin()
10889         i = compCharPos[c] - m->compCharStart;  in PrintAncStates_Gen()
11065         i = compCharPos[c] - m->compCharStart;  in PrintAncStates_NUC4()
11184         k = compCharPos[c] - m->compCharStart;  in PrintAncStates_Std()
12359         j = compCharPos[c] - m->compCharStart;  in PrintSiteRates_Gen()
12430         j = compCharPos[c] - m->compCharStart;  in PrintSiteRates_Std()
12610                             if (compCharPos[i] == compCharPos[j])  in PrintStates()
12652                 compressedCharPosition = compCharPos[i];  in PrintStates()
12689                 compressedCharPosition = compCharPos[i];  in PrintStates()
12728                             for (k=0; k<m->nStates[compCharPos[j] - m->compCharStart]; k++)  in PrintStates()
13063             compressedCharPosition = compCharPos[i];  in PrintStates()
13105             compressedCharPosition = compCharPos[i];  in PrintStates()