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| .. | | 03-May-2022 | - |
| .github/ISSUE_TEMPLATE/ | H | 13-Feb-2019 | - | 78 | 56 |
| am-aux/ | H | 13-Feb-2019 | - | 4,908 | 4,021 |
| am-macros/ | H | 13-Feb-2019 | - | 17 | 16 |
| doc/ | H | 13-Feb-2019 | - | 22,774 | 20,130 |
| examples/ | H | 13-Feb-2019 | - | 3,143 | 2,925 |
| src/ | H | 13-Feb-2019 | - | 118,479 | 96,404 |
| .gitignore | H A D | 13-Feb-2019 | 539 | 45 | 34 |
| COPYING | H A D | 13-Feb-2019 | 34.3 KiB | 675 | 553 |
| INSTALL | H A D | 13-Feb-2019 | 8.9 KiB | 244 | 170 |
| Makefile.am | H A D | 13-Feb-2019 | 83 | 6 | 3 |
| Makefile.in | H A D | 13-Feb-2019 | 26.3 KiB | 833 | 740 |
| NEWS | H A D | 13-Feb-2019 | 2.9 KiB | 68 | 59 |
| README | H A D | 13-Feb-2019 | 1.8 KiB | 60 | 40 |
| TODO | H A D | 13-Feb-2019 | 1.5 KiB | 34 | 27 |
| aclocal.m4 | H A D | 13-Feb-2019 | 121.3 KiB | 3,167 | 2,933 |
| configure | H A D | 13-Feb-2019 | 273.3 KiB | 9,365 | 7,672 |
| configure.ac | H A D | 13-Feb-2019 | 8.7 KiB | 265 | 211 |
README
1Hi,
2
3This is the GitHub repository for MrBayes, a program used for Bayesian
4inference of phylogeny.
5
6
7Build instructions, very very short version (would install MrBayes as
8"/usr/local/bin/mb" on a Unix system):
9
10 git clone --depth=1 https://github.com/NBISweden/MrBayes.git
11 cd MrBayes
12 ./configure
13 make && sudo make install
14
15 Refer to the document called "INSTALL" for further information.
16
17
18Current repository directory layout:
19
20 .
21 ├── am-* : Files relating to the build system
22 ├── doc
23 │ ├── manual : The manual
24 │ └── tutorial : A tutorial
25 ├── examples : Example input data sets
26 └── src : C source code
27
28
29The web site is available at
30
31 http://NBISweden.github.io/MrBayes/
32
33
34Historical releases are tagged with "v3.2.0" (etc.) from release 3.2.0
35onwards.
36
37The 'master' branch contains releases.
38
39The 'develop' branch should hopefully, at all times, contain working
40development code that at least compiles. Apart from simple fixes, new
41development happens on feature branches off the 'develop' branch, and
42are merged back into 'develop' when finished. This more or less follows
43the "git-flow" branching model.
44
45The 'gh-pages' branch contains the web site (only).
46
47The 'testing' branch contains testing data files (only).
48
49After release 3.2.6 (November 2015), MrBayes entered "maintenance mode",
50and its care has been passed over to NBIS (National Bioinformatics
51Infrastructure Sweden, http://nbis.se/). The original development
52team is still involved with the program, but any future releases will
53probably be geared more towards bug-fixes rather than addition of new
54features.
55
56With kind regards,
57 Andreas (Kusalananda) Kähäri, and
58 Johan Nylander
59 NBIS
60