Lines Matching refs:stepBurnin
537 int stepIndexSS,numSamplesInStepSS, stepBeginSS, stepBurnin; in DoSumSs() local
671 stepBurnin = (int)(numSamplesInStepSS*chainParams.burninFraction); in DoSumSs()
675 stepBurnin = chainParams.chainBurnIn; in DoSumSs()
676 if (stepBurnin >= numSamplesInStepSS) in DoSumSs()
678 …urnin in each step(%d) is longer then the step itself(%d). \n", spacer,stepBurnin, numSamplesInSte… in DoSumSs()
718 … based on samples excluding burn-in %d samples (%d%%) \n", spacer, stepBurnin,(int)(100*chainP… in DoSumSs()
720 …he table entrances are based on samples excluding burn-in %d samples \n", spacer, stepBurnin); in DoSumSs()
752 lnlp+= stepBurnin; in DoSumSs()
766 tmpMfl = (log(stepAcumulatorSS/(numSamplesInStepSS-stepBurnin)) + stepScalerSS); in DoSumSs()
898 …yesPrint ("%s According to step burn-in, first %d samples are not ploted.\n", spacer,stepBurnin); in DoSumSs()
902 for (j=stepBurnin;j<numSamplesInStepSS;j++) in DoSumSs()
908 firstlnlp=plotArrayY[sumssParams.numRuns] + stepBurnin; in DoSumSs()
909 lnlp+=stepBurnin; in DoSumSs()
918 for (j=stepBurnin;j<numSamplesInStepSS;j++) in DoSumSs()
924 if (k>=stepBurnin && k<numSamplesInStepSS) in DoSumSs()
942 beginPrint=stepBurnin; in DoSumSs()
943 countPrint=numSamplesInStepSS-stepBurnin; in DoSumSs()
987 stepBurnin=j; in DoSumSs()
1012 MrBayesPrint (" Current step burn-in value is:%d\n", stepBurnin); in DoSumSs()
1016 k = scanf("%d",&stepBurnin); in DoSumSs()
1018 while (stepBurnin < 0 || stepBurnin > numSamplesInStepSS-1); in DoSumSs()