| /dports/biology/vt/vt-0.57721/lib/htslib/ |
| H A D | probaln.c | 76 const uint8_t *iqual, const probaln_par_t *c, int *state, uint8_t *q) in probaln_glocal()
282 uint8_t conv[256], *iqual, *ref, *query; in main() local
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/ |
| H A D | probaln.c | 78 const uint8_t *iqual, const probaln_par_t *c, int *state, uint8_t *q) in probaln_glocal()
284 uint8_t conv[256], *iqual, *ref, *query; in main() local
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/ |
| H A D | probaln.c | 76 const uint8_t *iqual, const probaln_par_t *c, int *state, uint8_t *q) in probaln_glocal()
282 uint8_t conv[256], *iqual, *ref, *query; in main() local
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| /dports/biology/ugene/ugene-40.1/src/libs_3rdparty/samtools/src/samtools/ |
| H A D | kprobaln.c | 72 …pa_glocal(const uint8_t *_ref, int l_ref, const uint8_t *_query, int l_query, const uint8_t *iqual, in kpa_glocal()
251 uint8_t conv[256], *iqual, *ref, *query; in main() local
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| /dports/biology/stacks/stacks-2.4/htslib/ |
| H A D | probaln.c | 72 const uint8_t *iqual, const probaln_par_t *c, int *state, uint8_t *q) in probaln_glocal()
257 uint8_t conv[256], *iqual, *ref, *query; in main() local
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| /dports/biology/stringtie/stringtie-2.1.1/samtools-0.1.18/ |
| H A D | kprobaln.c | 72 …pa_glocal(const uint8_t *_ref, int l_ref, const uint8_t *_query, int l_query, const uint8_t *iqual, in kpa_glocal()
251 uint8_t conv[256], *iqual, *ref, *query; in main() local
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| /dports/biology/seqan1/seqan-1.3.1/lib/samtools/ |
| H A D | kprobaln.c | 72 …pa_glocal(const uint8_t *_ref, int l_ref, const uint8_t *_query, int l_query, const uint8_t *iqual, in kpa_glocal()
251 uint8_t conv[256], *iqual, *ref, *query; in main() local
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| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/ |
| H A D | probaln.c | 72 const uint8_t *iqual, const probaln_par_t *c, int *state, uint8_t *q) in probaln_glocal()
257 uint8_t conv[256], *iqual, *ref, *query; in main() local
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| /dports/biology/py-pysam/pysam-0.18.0/htslib/ |
| H A D | probaln.c | 78 int l_query, const uint8_t *iqual, const probaln_par_t *c, in probaln_glocal()
420 uint8_t conv[256], *iqual, *ref, *query; in main() local
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| /dports/biology/htslib/htslib-1.14/ |
| H A D | probaln.c | 78 int l_query, const uint8_t *iqual, const probaln_par_t *c, in probaln_glocal()
420 uint8_t conv[256], *iqual, *ref, *query; in main() local
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| /dports/biology/emboss/EMBOSS-6.6.0/emboss/ |
| H A D | infoassembly.c | 1015 int iqual=0; in infoassembly_processRead() local
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| /dports/biology/bcftools/bcftools-1.14/ |
| H A D | vcfstats.c | 693 int iqual = (isnan(line->qual) || line->qual<0) ? 0 : 1 + (int)(line->qual*10); in do_indel_stats() local
830 int iqual = (isnan(line->qual) || line->qual<0) ? 0 : 1 + (int)(line->qual*10); in do_snp_stats() local
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| /dports/biology/bio-mocha/bcftools-1.14/ |
| H A D | vcfstats.c | 693 int iqual = (isnan(line->qual) || line->qual<0) ? 0 : 1 + (int)(line->qual*10); in do_indel_stats() local
830 int iqual = (isnan(line->qual) || line->qual<0) ? 0 : 1 + (int)(line->qual*10); in do_snp_stats() local
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| /dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
| H A D | vcfstats.c | 693 int iqual = (isnan(line->qual) || line->qual<0) ? 0 : 1 + (int)(line->qual*10); in do_indel_stats() local
830 int iqual = (isnan(line->qual) || line->qual<0) ? 0 : 1 + (int)(line->qual*10); in do_snp_stats() local
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| H A D | vcfstats.c.pysam.c | 695 int iqual = (isnan(line->qual) || line->qual<0) ? 0 : 1 + (int)(line->qual*10); in do_indel_stats() local
832 int iqual = (isnan(line->qual) || line->qual<0) ? 0 : 1 + (int)(line->qual*10); in do_snp_stats() local
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| /dports/science/py-obspy/obspy-1.2.2/obspy/io/sac/ |
| H A D | sactrace.py | 792 iqual = IntHeader('iqual') variable in SACTrace
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| /dports/biology/emboss/EMBOSS-6.6.0/ajax/core/ |
| H A D | ajassemread.c | 2228 ajint iqual; in asseminReadSamAlignments() local
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| H A D | ajseqread.c | 3425 ajint iqual; in seqReadFastqSanger() local
3872 ajint iqual; in seqReadFastqIllumina() local
4081 ajint iqual; in seqReadFastqSolexa() local
10395 ajint iqual; in seqReadSam() local
10637 ajuint iqual; in seqReadScf() local
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| H A D | ajseqwrite.c | 7387 unsigned char iqual; in seqWriteScf() local
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| /dports/graphics/gmt/gmt-6.3.0/src/seis/ |
| H A D | sacio.h | 166 int iqual; /* quality of data (not used) */ member
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| /dports/games/zangband/zangband/src/ |
| H A D | main-ami.c | 2686 static void process_msg(int i,ULONG iclass, UWORD icode, UWORD iqual, APTR iaddr) in process_msg()
2833 UWORD iqual; in amiga_event() local
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| /dports/games/tomenet/tomenet-4.6.0/src/client/ |
| H A D | main-ami.c | 1723 UWORD iqual; in amiga_event() local
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| /dports/biology/py-pysam/pysam-0.18.0/samtools/ |
| H A D | stats.c | 1560 int ibase,iqual; in output_stats() local
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| H A D | stats.c.pysam.c | 1562 int ibase,iqual; in output_stats() local
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| /dports/biology/samtools/samtools-1.14/ |
| H A D | stats.c | 1560 int ibase,iqual; in output_stats() local
|