1 /* $Id: matchpool.h 157221 2015-01-22 18:38:57Z twu $ */ 2 #ifndef MATCHPOOL_INCLUDED 3 #define MATCHPOOL_INCLUDED 4 5 #include "bool.h" 6 #include "iit-read-univ.h" 7 #include "genomicpos.h" 8 #include "types.h" 9 #include "match.h" 10 #include "list.h" 11 12 #define T Matchpool_T 13 typedef struct T *T; 14 15 extern void 16 Matchpool_free (T *old); 17 extern void 18 Matchpool_free_memory (T this); 19 extern T 20 Matchpool_new (void); 21 extern void 22 Matchpool_reset (T this); 23 extern void 24 Matchpool_save (T this); 25 extern void 26 Matchpool_restore (T this); 27 extern List_T 28 Matchpool_push (List_T list, T this, int querypos, int querylength, bool forwardp, bool fivep, 29 Univcoord_T diagonal, Univ_IIT_T chromosome_iit); 30 extern List_T 31 Matchpool_push_existing (List_T list, T this, Match_T match); 32 extern List_T 33 Matchpool_pop (List_T list, Match_T *x); 34 extern List_T 35 Matchpool_transfer (List_T dest, List_T source); 36 37 #undef T 38 #endif 39