Home
last modified time | relevance | path

Searched refs:altbase (Results 1 – 25 of 27) sorted by relevance

12

/dports/x11-wm/fluxbox/fluxbox-1.3.7/src/
H A DIconbarTheme.cc54 std::string altbase = m_altname; in fallback() local
55 altbase.erase(altbase.find_last_of(".")); in fallback()
67 return (tm.loadItem(item, base + ".borderWidth", altbase + ".BorderWidth") || in fallback()
73 return (tm.loadItem(item, base + ".borderColor", altbase + ".BorderColor") || in fallback()
82 return (tm.loadItem(item, base + ".justify", altbase + ".Justify") in fallback()
/dports/biology/freebayes/freebayes-1.3.5/src/
H A DResultData.cpp157 string altbase = altAllele.base(); in vcf() local
198 alternateCount += genotype->alleleCount(altbase); in vcf()
201 unsigned int altCount = sample.observationCount(altbase); in vcf()
259 map<string, vector<Allele*> >::iterator f = alleleGroups.find(altbase); in vcf()
261 vector<Allele*>& alternateAlleles = alleleGroups.at(altbase); in vcf()
320 var.info["PAO"].push_back(convert(samples.partialObservationCount(altbase))); in vcf()
321 var.info["QA"].push_back(convert(samples.qualSum(altbase))); in vcf()
322 var.info["PQA"].push_back(convert(samples.partialQualSum(altbase))); in vcf()
343 …RUN"].push_back(convert(parser->homopolymerRunLeft(altbase) + 1 + parser->homopolymerRunRight(altb… in vcf()
528 string altbase = altAllele.base(); in vcf() local
[all …]
H A DAlleleParser.h293 int homopolymerRunLeft(string altbase);
294 int homopolymerRunRight(string altbase);
328 bool isCpG(string& altbase);
H A DSample.h88 StrandBaseCounts strandBaseCount(string refbase, string altbase);
H A DGenotype.h92 string relativeGenotype(string& refbase, string& altbase);
442 …t, int> alternateAndReferenceCount(vector<Allele*>& observations, string& refbase, string altbase);
H A DSample.cpp214 Sample::strandBaseCount(string refbase, string altbase) { in strandBaseCount() argument
231 } else if (base == altbase) { in strandBaseCount()
H A DGenotype.cpp177 string Genotype::relativeGenotype(string& refbase, string& altbase) { in relativeGenotype() argument
181 if (b.currentBase == altbase && refbase != b.currentBase) { in relativeGenotype()
184 } else if (b.currentBase != altbase && refbase != b.currentBase) { in relativeGenotype()
1608 …, int> alternateAndReferenceCount(vector<Allele*>& observations, string& refbase, string altbase) { in alternateAndReferenceCount() argument
1614 else if ((*allele)->currentBase == altbase) in alternateAndReferenceCount()
H A DAlleleParser.cpp971 bool AlleleParser::isCpG(string& altbase) { in isCpG() argument
981 if ((nextb == "G" && ((currb == "C" && altbase == "T") || (currb == "T" && altbase == "C"))) in isCpG()
983 (prevb == "C" && ((currb == "G" && altbase == "A") || (currb == "A" && altbase == "G")))) in isCpG()
4069 int AlleleParser::homopolymerRunLeft(string altbase) { argument
4074 while (sequenceposition >= 0 && currentSequence.substr(sequenceposition, 1) == altbase) {
4083 int AlleleParser::homopolymerRunRight(string altbase) { argument
4088 while (sequenceposition >= 0 && currentSequence.substr(sequenceposition, 1) == altbase) {
H A DAllele.cpp637 string& altbase = ordered.rbegin()->second; in homogenizeAlleles() local
641 homogenizeTo[altseq] = alleleGroups[altbase].front(); in homogenizeAlleles()
954 baseCount(vector<Allele*>& alleles, string refbase, string altbase) { in baseCount() argument
969 } else if (base == altbase) { in baseCount()
H A DAllele.h343 baseCount(vector<Allele*>& alleles, string refbase, string altbase);
/dports/devel/git-svn/git-2.34.1/
H A Dhttp-walker.c553 struct alt_base *altbase = data->alt; in fetch() local
557 while (altbase) { in fetch()
558 if (!http_fetch_pack(walker, altbase, hash)) in fetch()
561 altbase = altbase->next; in fetch()
/dports/devel/git-gui/git-2.34.1/
H A Dhttp-walker.c553 struct alt_base *altbase = data->alt; in fetch() local
557 while (altbase) { in fetch()
558 if (!http_fetch_pack(walker, altbase, hash)) in fetch()
561 altbase = altbase->next; in fetch()
/dports/devel/git-p4/git-2.34.1/
H A Dhttp-walker.c553 struct alt_base *altbase = data->alt; in fetch() local
557 while (altbase) { in fetch()
558 if (!http_fetch_pack(walker, altbase, hash)) in fetch()
561 altbase = altbase->next; in fetch()
/dports/devel/git/git-2.34.1/
H A Dhttp-walker.c553 struct alt_base *altbase = data->alt; in fetch() local
557 while (altbase) { in fetch()
558 if (!http_fetch_pack(walker, altbase, hash)) in fetch()
561 altbase = altbase->next; in fetch()
/dports/devel/git-cvs/git-2.34.1/
H A Dhttp-walker.c553 struct alt_base *altbase = data->alt; in fetch() local
557 while (altbase) { in fetch()
558 if (!http_fetch_pack(walker, altbase, hash)) in fetch()
561 altbase = altbase->next; in fetch()
/dports/devel/cgit/cgit-1.2.3/git/
H A Dhttp-walker.c562 struct alt_base *altbase = data->alt; in fetch() local
566 while (altbase) { in fetch()
567 if (!http_fetch_pack(walker, altbase, hash)) in fetch()
570 altbase = altbase->next; in fetch()
/dports/games/openbor/openbor-3caaddd5/engine/source/openborscript/
H A Dentity.c960 (*pretvar)->dblVal = (DOUBLE)handle->altbase; in openbor_get_entity_property()
2131 handle->altbase = temp_float; in openbor_set_entity_property()
/dports/games/openbor3482/openbor-2c1ecd7/engine/
H A Dopenbor.h1207 float altbase; // Altitude affected by movea member
H A Dopenbor.c10680 if(movea!=0) self->altbase += movea; in update_frame()
10681 else self->altbase = 0; in update_frame()
10825 ent->altbase = 0; in ent_set_anim()
12476 …self->base = (seta + self->altbase >=0 ) * (seta+self->altbase) + (other->a + other->animation->pl… in update_animation()
12481 …self->base = (seta + self->altbase >=0 ) * (seta+self->altbase) + (self->a >= level->walls[wall][7… in update_animation()
12483 else if(seta >= 0) self->base = (seta + self->altbase >=0 ) * (seta+self->altbase); in update_animation()
/dports/games/openbor3711/openbor-6ec17fa/engine/
H A Dopenbor.h1231 float altbase; // Altitude affected by movea
H A Dopenbor.c10908 if(movea!=0) self->altbase += movea; in update_frame()
10909 else self->altbase = 0; in update_frame()
11064 ent->altbase = 0; in ent_set_anim()
12704 …self->base = (seta + self->altbase >=0 ) * (seta+self->altbase) + (other->a + other->animation->pl… in update_animation()
12709 …self->base = (seta + self->altbase >=0 ) * (seta+self->altbase) + (self->a >= level->walls[wall][7… in update_animation()
12711 else if(seta >= 0) self->base = (seta + self->altbase >=0 ) * (seta+self->altbase); in update_animation()
/dports/games/openbor3979/openbor-2bcf25b/engine/
H A Dopenbor.h1264 float altbase; // Altitude affected by movea member
H A Dopenbor.c14873 self->altbase += movea; in update_frame()
14877 self->altbase = 0; in update_frame()
15086 ent->altbase = 0; in ent_set_anim()
17247 …self->base = (seta + self->altbase >= 0 ) * (seta + self->altbase) + (other->a + other->animation-… in adjust_base()
17252 … self->base = (seta + self->altbase >= 0 ) * (seta + self->altbase) + level->walls[wall][7]; in adjust_base()
17256 self->base = (seta + self->altbase >= 0 ) * (seta + self->altbase); in adjust_base()
/dports/games/openbor4432/openbor-ba1eb4f/engine/
H A Dopenbor.h2034 float altbase; // Altitude affected by movea member
/dports/games/openbor/openbor-3caaddd5/engine/
H A Dopenbor.h2550 float altbase; // Altitude affected by movea. ~~ member

12