| /dports/biology/wise/wise2.4.1/src/models/ |
| H A D | sywise20.c | 2195 int cellscore; in read_hidden_SyWise20() local
2290 if( cellscore != NULL) { in max_hidden_SyWise20()
2301 if( cellscore != NULL) { in max_hidden_SyWise20()
2312 if( cellscore != NULL) { in max_hidden_SyWise20()
2324 if( cellscore != NULL) { in max_hidden_SyWise20()
2335 if( cellscore != NULL) { in max_hidden_SyWise20()
2349 if( cellscore != NULL) { in max_hidden_SyWise20()
2360 if( cellscore != NULL) { in max_hidden_SyWise20()
2794 int cellscore; in read_special_strip_SyWise20() local
6691 int cellscore = (-1); in PackAln_read_generic_SyWise20() local
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| H A D | estloop3.c | 2061 int cellscore; in read_hidden_EstLoop3() local
2156 if( cellscore != NULL) { in max_hidden_EstLoop3()
2167 if( cellscore != NULL) { in max_hidden_EstLoop3()
2178 if( cellscore != NULL) { in max_hidden_EstLoop3()
2189 if( cellscore != NULL) { in max_hidden_EstLoop3()
2200 if( cellscore != NULL) { in max_hidden_EstLoop3()
2211 if( cellscore != NULL) { in max_hidden_EstLoop3()
2222 if( cellscore != NULL) { in max_hidden_EstLoop3()
2552 int cellscore; in read_special_strip_EstLoop3() local
5602 int cellscore = (-1); in PackAln_read_generic_EstLoop3() local
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| H A D | genomewise9.c | 2147 int cellscore; in read_hidden_GenomeWise9() local
2246 if( cellscore != NULL) { in max_hidden_GenomeWise9()
2257 if( cellscore != NULL) { in max_hidden_GenomeWise9()
2271 if( cellscore != NULL) { in max_hidden_GenomeWise9()
2282 if( cellscore != NULL) { in max_hidden_GenomeWise9()
2296 if( cellscore != NULL) { in max_hidden_GenomeWise9()
2307 if( cellscore != NULL) { in max_hidden_GenomeWise9()
2323 if( cellscore != NULL) { in max_hidden_GenomeWise9()
2597 int cellscore; in read_special_strip_GenomeWise9() local
5888 int cellscore = (-1); in PackAln_read_generic_GenomeWise9() local
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| H A D | statwise10.c | 1044 int cellscore; in read_hidden_StatWise10() local
1139 if( cellscore != NULL) { in max_hidden_StatWise10()
1150 if( cellscore != NULL) { in max_hidden_StatWise10()
1161 if( cellscore != NULL) { in max_hidden_StatWise10()
1172 if( cellscore != NULL) { in max_hidden_StatWise10()
1184 if( cellscore != NULL) { in max_hidden_StatWise10()
1198 if( cellscore != NULL) { in max_hidden_StatWise10()
1209 if( cellscore != NULL) { in max_hidden_StatWise10()
1293 int cellscore; in read_special_strip_StatWise10() local
2939 int cellscore = (-1); in PackAln_read_Expl_StatWise10() local
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| H A D | estfrag3.c | 1675 int cellscore; in read_hidden_EstFrag3() local
1770 if( cellscore != NULL) { in max_hidden_EstFrag3()
1781 if( cellscore != NULL) { in max_hidden_EstFrag3()
1792 if( cellscore != NULL) { in max_hidden_EstFrag3()
1803 if( cellscore != NULL) { in max_hidden_EstFrag3()
1814 if( cellscore != NULL) { in max_hidden_EstFrag3()
1825 if( cellscore != NULL) { in max_hidden_EstFrag3()
1836 if( cellscore != NULL) { in max_hidden_EstFrag3()
2166 int cellscore; in read_special_strip_EstFrag3() local
5039 int cellscore = (-1); in PackAln_read_generic_EstFrag3() local
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| H A D | genephase6.c | 2304 int cellscore; in read_hidden_GenePhase6() local
2399 if( cellscore != NULL) { in max_hidden_GenePhase6()
2410 if( cellscore != NULL) { in max_hidden_GenePhase6()
2421 if( cellscore != NULL) { in max_hidden_GenePhase6()
2432 if( cellscore != NULL) { in max_hidden_GenePhase6()
2443 if( cellscore != NULL) { in max_hidden_GenePhase6()
2454 if( cellscore != NULL) { in max_hidden_GenePhase6()
2465 if( cellscore != NULL) { in max_hidden_GenePhase6()
2770 int cellscore; in read_special_strip_GenePhase6() local
6198 int cellscore = (-1); in PackAln_read_generic_GenePhase6() local
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| H A D | estwise3.c | 1836 int cellscore; in read_hidden_EstWise3() local
1931 if( cellscore != NULL) { in max_hidden_EstWise3()
1942 if( cellscore != NULL) { in max_hidden_EstWise3()
1953 if( cellscore != NULL) { in max_hidden_EstWise3()
1964 if( cellscore != NULL) { in max_hidden_EstWise3()
1975 if( cellscore != NULL) { in max_hidden_EstWise3()
1986 if( cellscore != NULL) { in max_hidden_EstWise3()
1997 if( cellscore != NULL) { in max_hidden_EstWise3()
2326 int cellscore; in read_special_strip_EstWise3() local
5140 int cellscore = (-1); in PackAln_read_generic_EstWise3() local
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| H A D | genewise21.c | 3759 int cellscore; in read_hidden_GeneWise21() local
3854 if( cellscore != NULL) { in max_hidden_GeneWise21()
3865 if( cellscore != NULL) { in max_hidden_GeneWise21()
3876 if( cellscore != NULL) { in max_hidden_GeneWise21()
3887 if( cellscore != NULL) { in max_hidden_GeneWise21()
3898 if( cellscore != NULL) { in max_hidden_GeneWise21()
3909 if( cellscore != NULL) { in max_hidden_GeneWise21()
3920 if( cellscore != NULL) { in max_hidden_GeneWise21()
4787 int cellscore; in read_special_strip_GeneWise21() local
12009 int cellscore = (-1); in PackAln_read_generic_GeneWise21() local
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| H A D | clonewisedp.c | 1527 int cellscore; in read_hidden_CloneWise() local
1623 if( cellscore != NULL) { in max_hidden_CloneWise()
1634 if( cellscore != NULL) { in max_hidden_CloneWise()
1645 if( cellscore != NULL) { in max_hidden_CloneWise()
1656 if( cellscore != NULL) { in max_hidden_CloneWise()
1667 if( cellscore != NULL) { in max_hidden_CloneWise()
1682 if( cellscore != NULL) { in max_hidden_CloneWise()
1693 if( cellscore != NULL) { in max_hidden_CloneWise()
1775 int cellscore; in read_special_strip_CloneWise() local
3558 int cellscore = (-1); in PackAln_read_generic_CloneWise() local
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| H A D | localdba.c | 1518 int cellscore; in read_hidden_LocalDnaMatchBlock() local
1613 if( cellscore != NULL) { in max_hidden_LocalDnaMatchBlock()
1625 if( cellscore != NULL) { in max_hidden_LocalDnaMatchBlock()
1636 if( cellscore != NULL) { in max_hidden_LocalDnaMatchBlock()
1647 if( cellscore != NULL) { in max_hidden_LocalDnaMatchBlock()
1661 if( cellscore != NULL) { in max_hidden_LocalDnaMatchBlock()
1673 if( cellscore != NULL) { in max_hidden_LocalDnaMatchBlock()
1684 if( cellscore != NULL) { in max_hidden_LocalDnaMatchBlock()
1908 int cellscore; in read_special_strip_LocalDnaMatchBlock() local
4398 int cellscore = (-1); in PackAln_read_generic_LocalDnaMatchBlock() local
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| H A D | alignwisedp.c | 1747 int cellscore; in read_hidden_AlignWise() local
1842 if( cellscore != NULL) { in max_hidden_AlignWise()
1853 if( cellscore != NULL) { in max_hidden_AlignWise()
1864 if( cellscore != NULL) { in max_hidden_AlignWise()
1876 if( cellscore != NULL) { in max_hidden_AlignWise()
1890 if( cellscore != NULL) { in max_hidden_AlignWise()
1901 if( cellscore != NULL) { in max_hidden_AlignWise()
1915 if( cellscore != NULL) { in max_hidden_AlignWise()
2108 int cellscore; in read_special_strip_AlignWise() local
4544 int cellscore = (-1); in PackAln_read_generic_AlignWise() local
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| H A D | fivestate.c | 1547 int cellscore; in read_hidden_FiveStateProtein() local
1642 if( cellscore != NULL) { in max_hidden_FiveStateProtein()
1653 if( cellscore != NULL) { in max_hidden_FiveStateProtein()
1665 if( cellscore != NULL) { in max_hidden_FiveStateProtein()
1676 if( cellscore != NULL) { in max_hidden_FiveStateProtein()
1687 if( cellscore != NULL) { in max_hidden_FiveStateProtein()
1701 if( cellscore != NULL) { in max_hidden_FiveStateProtein()
1713 if( cellscore != NULL) { in max_hidden_FiveStateProtein()
1890 int cellscore; in read_special_strip_FiveStateProtein() local
4152 int cellscore = (-1); in PackAln_read_generic_FiveStateProtein() local
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| H A D | cdnawise10.c | 2051 int cellscore; in read_hidden_CdnaWise10() local
2146 if( cellscore != NULL) { in max_hidden_CdnaWise10()
2157 if( cellscore != NULL) { in max_hidden_CdnaWise10()
2168 if( cellscore != NULL) { in max_hidden_CdnaWise10()
2180 if( cellscore != NULL) { in max_hidden_CdnaWise10()
2194 if( cellscore != NULL) { in max_hidden_CdnaWise10()
2205 if( cellscore != NULL) { in max_hidden_CdnaWise10()
2219 if( cellscore != NULL) { in max_hidden_CdnaWise10()
2583 int cellscore; in read_special_strip_CdnaWise10() local
5792 int cellscore = (-1); in PackAln_read_generic_CdnaWise10() local
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| H A D | geneloop21.c | 3345 int cellscore; in read_hidden_GeneLoop21() local
3440 if( cellscore != NULL) { in max_hidden_GeneLoop21()
3451 if( cellscore != NULL) { in max_hidden_GeneLoop21()
3462 if( cellscore != NULL) { in max_hidden_GeneLoop21()
3473 if( cellscore != NULL) { in max_hidden_GeneLoop21()
3484 if( cellscore != NULL) { in max_hidden_GeneLoop21()
3495 if( cellscore != NULL) { in max_hidden_GeneLoop21()
3506 if( cellscore != NULL) { in max_hidden_GeneLoop21()
4371 int cellscore; in read_special_strip_GeneLoop21() local
10998 int cellscore = (-1); in PackAln_read_generic_GeneLoop21() local
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| H A D | bigdba.c | 1596 int cellscore; in read_hidden_BigDnaMatchBlock() local
1691 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1702 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1713 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1724 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1738 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1749 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
1760 if( cellscore != NULL) { in max_hidden_BigDnaMatchBlock()
2041 int cellscore; in read_special_strip_BigDnaMatchBlock() local
4668 int cellscore = (-1); in PackAln_read_generic_BigDnaMatchBlock() local
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| H A D | dba.c | 1480 int cellscore; in read_hidden_DnaMatchBlock() local
1575 if( cellscore != NULL) { in max_hidden_DnaMatchBlock()
1586 if( cellscore != NULL) { in max_hidden_DnaMatchBlock()
1597 if( cellscore != NULL) { in max_hidden_DnaMatchBlock()
1608 if( cellscore != NULL) { in max_hidden_DnaMatchBlock()
1622 if( cellscore != NULL) { in max_hidden_DnaMatchBlock()
1633 if( cellscore != NULL) { in max_hidden_DnaMatchBlock()
1644 if( cellscore != NULL) { in max_hidden_DnaMatchBlock()
1867 int cellscore; in read_special_strip_DnaMatchBlock() local
4180 int cellscore = (-1); in PackAln_read_generic_DnaMatchBlock() local
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| H A D | geneloop6.c | 1994 int cellscore; in read_hidden_GeneLoop6() local
2089 if( cellscore != NULL) { in max_hidden_GeneLoop6()
2100 if( cellscore != NULL) { in max_hidden_GeneLoop6()
2111 if( cellscore != NULL) { in max_hidden_GeneLoop6()
2122 if( cellscore != NULL) { in max_hidden_GeneLoop6()
2133 if( cellscore != NULL) { in max_hidden_GeneLoop6()
2144 if( cellscore != NULL) { in max_hidden_GeneLoop6()
2155 if( cellscore != NULL) { in max_hidden_GeneLoop6()
2459 int cellscore; in read_special_strip_GeneLoop6() local
5360 int cellscore = (-1); in PackAln_read_generic_GeneLoop6() local
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| H A D | estslimloop.c | 1787 int cellscore; in read_hidden_EstSlimLoop3() local
1882 if( cellscore != NULL) { in max_hidden_EstSlimLoop3()
1893 if( cellscore != NULL) { in max_hidden_EstSlimLoop3()
1906 if( cellscore != NULL) { in max_hidden_EstSlimLoop3()
1917 if( cellscore != NULL) { in max_hidden_EstSlimLoop3()
1928 if( cellscore != NULL) { in max_hidden_EstSlimLoop3()
1942 if( cellscore != NULL) { in max_hidden_EstSlimLoop3()
1953 if( cellscore != NULL) { in max_hidden_EstSlimLoop3()
2059 int cellscore; in read_special_strip_EstSlimLoop3() local
4083 int cellscore = (-1); in PackAln_read_generic_EstSlimLoop3() local
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| H A D | localclonewisedp.c | 1412 int cellscore; in read_hidden_LocalCloneWise() local
1508 if( cellscore != NULL) { in max_hidden_LocalCloneWise()
1519 if( cellscore != NULL) { in max_hidden_LocalCloneWise()
1530 if( cellscore != NULL) { in max_hidden_LocalCloneWise()
1541 if( cellscore != NULL) { in max_hidden_LocalCloneWise()
1552 if( cellscore != NULL) { in max_hidden_LocalCloneWise()
1567 if( cellscore != NULL) { in max_hidden_LocalCloneWise()
1578 if( cellscore != NULL) { in max_hidden_LocalCloneWise()
1660 int cellscore; in read_special_strip_LocalCloneWise() local
3320 int cellscore = (-1); in PackAln_read_generic_LocalCloneWise() local
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| H A D | threestateloop.c | 1422 int cellscore; in read_hidden_ThreeStateLoop() local
1518 if( cellscore != NULL) { in max_hidden_ThreeStateLoop()
1529 if( cellscore != NULL) { in max_hidden_ThreeStateLoop()
1540 if( cellscore != NULL) { in max_hidden_ThreeStateLoop()
1555 if( cellscore != NULL) { in max_hidden_ThreeStateLoop()
1566 if( cellscore != NULL) { in max_hidden_ThreeStateLoop()
1577 if( cellscore != NULL) { in max_hidden_ThreeStateLoop()
1592 if( cellscore != NULL) { in max_hidden_ThreeStateLoop()
1648 int cellscore; in read_special_strip_ThreeStateLoop() local
3321 int cellscore = (-1); in PackAln_read_generic_ThreeStateLoop() local
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| H A D | genestretch6.c | 2091 int cellscore; in read_hidden_GeneStretch6() local
2186 if( cellscore != NULL) { in max_hidden_GeneStretch6()
2197 if( cellscore != NULL) { in max_hidden_GeneStretch6()
2208 if( cellscore != NULL) { in max_hidden_GeneStretch6()
2219 if( cellscore != NULL) { in max_hidden_GeneStretch6()
2230 if( cellscore != NULL) { in max_hidden_GeneStretch6()
2241 if( cellscore != NULL) { in max_hidden_GeneStretch6()
2252 if( cellscore != NULL) { in max_hidden_GeneStretch6()
2558 int cellscore; in read_special_strip_GeneStretch6() local
5597 int cellscore = (-1); in PackAln_read_generic_GeneStretch6() local
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| H A D | largeblockdp.c | 1295 int cellscore; in read_hidden_LargeBlockAligner() local
1391 if( cellscore != NULL) { in max_hidden_LargeBlockAligner()
1402 if( cellscore != NULL) { in max_hidden_LargeBlockAligner()
1413 if( cellscore != NULL) { in max_hidden_LargeBlockAligner()
1424 if( cellscore != NULL) { in max_hidden_LargeBlockAligner()
1438 if( cellscore != NULL) { in max_hidden_LargeBlockAligner()
1449 if( cellscore != NULL) { in max_hidden_LargeBlockAligner()
1463 if( cellscore != NULL) { in max_hidden_LargeBlockAligner()
1556 int cellscore; in read_special_strip_LargeBlockAligner() local
3251 int cellscore = (-1); in PackAln_read_generic_LargeBlockAligner() local
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| H A D | genewise6.c | 1875 int cellscore; in read_hidden_GeneWise6() local
1970 if( cellscore != NULL) { in max_hidden_GeneWise6()
1981 if( cellscore != NULL) { in max_hidden_GeneWise6()
1992 if( cellscore != NULL) { in max_hidden_GeneWise6()
2003 if( cellscore != NULL) { in max_hidden_GeneWise6()
2014 if( cellscore != NULL) { in max_hidden_GeneWise6()
2025 if( cellscore != NULL) { in max_hidden_GeneWise6()
2036 if( cellscore != NULL) { in max_hidden_GeneWise6()
2341 int cellscore; in read_special_strip_GeneWise6() local
5152 int cellscore = (-1); in PackAln_read_generic_GeneWise6() local
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| H A D | estslim3.c | 1548 int cellscore; in read_hidden_EstSlim3() local
1643 if( cellscore != NULL) { in max_hidden_EstSlim3()
1654 if( cellscore != NULL) { in max_hidden_EstSlim3()
1666 if( cellscore != NULL) { in max_hidden_EstSlim3()
1677 if( cellscore != NULL) { in max_hidden_EstSlim3()
1688 if( cellscore != NULL) { in max_hidden_EstSlim3()
1702 if( cellscore != NULL) { in max_hidden_EstSlim3()
1713 if( cellscore != NULL) { in max_hidden_EstSlim3()
1818 int cellscore; in read_special_strip_EstSlim3() local
3572 int cellscore = (-1); in PackAln_read_generic_EstSlim3() local
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| H A D | dnaalign.c | 1522 int cellscore; in read_hidden_DnaAlign() local
1621 if( cellscore != NULL) { in max_hidden_DnaAlign()
1632 if( cellscore != NULL) { in max_hidden_DnaAlign()
1643 if( cellscore != NULL) { in max_hidden_DnaAlign()
1657 if( cellscore != NULL) { in max_hidden_DnaAlign()
1668 if( cellscore != NULL) { in max_hidden_DnaAlign()
1682 if( cellscore != NULL) { in max_hidden_DnaAlign()
1693 if( cellscore != NULL) { in max_hidden_DnaAlign()
1727 int cellscore; in read_special_strip_DnaAlign() local
3226 int cellscore = (-1); in PackAln_read_generic_DnaAlign() local
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