| /dports/biology/hhsuite/hh-suite-3.3.0/src/ |
| H A D | hhbacktracemac.cpp | 171 hit.i1 = hit.i[step]; in backtraceMAC()
172 hit.j1 = hit.j[step]; in backtraceMAC()
177 hit.S = new float[hit.nsteps+1]; in backtraceMAC()
188 int ssm = hit.ssm1 + hit.ssm2; in backtraceMAC()
199 hit.score_ss += hit.S_ss[step]; in backtraceMAC()
211 hit.S[step] = hit.S_ss[step] = hit.P_posterior[step] = 0.0; in backtraceMAC()
230 hit.score_aass = -hit.score; in backtraceMAC()
231 hit.logPval = 0; hit.Pval = 1; in backtraceMAC()
278 hit.i = new int[hit.i2 + hit.j2 + 2]; in initializeBacktrace()
283 hit.j = new int[hit.i2 + hit.j2 + 2]; in initializeBacktrace()
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| /dports/biology/py-biopython/biopython-1.79/Tests/ |
| H A D | test_SearchIO_hmmer3_tab.py | 39 hit = qresult[0]
55 hsp = hit.hsps[0]
65 hit = qresult[-1]
81 hsp = hit.hsps[0]
98 hit = qresult[0]
114 hsp = hit.hsps[0]
125 hit = qresult[0]
145 hit = qresult[1]
172 hit = qresult[0]
192 hit = qresult[1]
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| H A D | test_SearchIO_hmmer3_domtab.py | 41 hit = qresult[0]
51 hsp = hit.hsps[0]
73 hit = qresult[-1]
83 hsp = hit.hsps[0]
112 hit = qresult[0]
122 hsp = hit.hsps[0]
145 hit = qresult[0]
155 hsp = hit.hsps[0]
170 hit = qresult[1]
203 hit = qresult[0]
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| /dports/www/gitea/gitea-1.16.5/vendor/github.com/olivere/elastic/v7/ |
| H A D | inner_hit.go | 31 return hit
36 return hit
41 return hit
46 return hit
51 return hit
56 return hit
61 return hit
66 return hit
71 return hit
76 return hit
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| /dports/databases/cayley/cayley-0.7.5-2-gcf576ba/vendor/github.com/olivere/elastic/ |
| H A D | inner_hit.go | 31 return hit
36 return hit
41 return hit
46 return hit
51 return hit
56 return hit
61 return hit
66 return hit
71 return hit
76 return hit
[all …]
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| /dports/www/mattermost-server/mattermost-server-6.0.2/vendor/gopkg.in/olivere/elastic.v6/ |
| H A D | inner_hit.go | 31 return hit
36 return hit
41 return hit
46 return hit
51 return hit
56 return hit
61 return hit
66 return hit
71 return hit
76 return hit
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| /dports/textproc/gitlab-elasticsearch-indexer/gitlab-elasticsearch-indexer-ef1440548effec15831eda2d246dacc43233cefb/vendor/github.com/olivere/elastic/ |
| H A D | inner_hit.go | 31 return hit
36 return hit
41 return hit
46 return hit
51 return hit
56 return hit
61 return hit
66 return hit
71 return hit
76 return hit
[all …]
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| /dports/net-mgmt/bosun/bosun-0.9.0-preview/vendor/github.com/olivere/elastic/v7/ |
| H A D | inner_hit.go | 31 return hit
36 return hit
41 return hit
46 return hit
51 return hit
56 return hit
61 return hit
66 return hit
71 return hit
76 return hit
[all …]
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| /dports/databases/cayley/cayley-0.7.5-2-gcf576ba/vendor/gopkg.in/olivere/elastic.v5/ |
| H A D | inner_hit.go | 31 return hit
36 return hit
41 return hit
46 return hit
51 return hit
56 return hit
61 return hit
66 return hit
71 return hit
76 return hit
[all …]
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| /dports/net-mgmt/bosun/bosun-0.9.0-preview/vendor/github.com/olivere/elastic/ |
| H A D | inner_hit.go | 31 return hit
36 return hit
41 return hit
46 return hit
51 return hit
56 return hit
61 return hit
66 return hit
71 return hit
76 return hit
[all …]
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| /dports/net-mgmt/bosun/bosun-0.9.0-preview/vendor/github.com/google/cadvisor/Godeps/_workspace/src/gopkg.in/olivere/elastic.v2/ |
| H A D | inner_hit.go | 31 return hit
36 return hit
41 return hit
46 return hit
51 return hit
56 return hit
61 return hit
66 return hit
71 return hit
76 return hit
[all …]
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| /dports/net-mgmt/bosun/bosun-0.9.0-preview/vendor/gopkg.in/olivere/elastic.v5/ |
| H A D | inner_hit.go | 31 return hit
36 return hit
41 return hit
46 return hit
51 return hit
56 return hit
61 return hit
66 return hit
71 return hit
76 return hit
[all …]
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| /dports/net-mgmt/bosun/bosun-0.9.0-preview/vendor/gopkg.in/olivere/elastic.v3/ |
| H A D | inner_hit.go | 31 return hit
36 return hit
41 return hit
46 return hit
51 return hit
56 return hit
61 return hit
66 return hit
71 return hit
76 return hit
[all …]
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| /dports/deskutils/gnote/gnote-41.1/src/test/unit/ |
| H A D | trieutests.cpp | 73 ++hit; in SUITE()
78 ++hit; in SUITE()
83 ++hit; in SUITE()
88 ++hit; in SUITE()
93 ++hit; in SUITE()
98 ++hit; in SUITE()
103 ++hit; in SUITE()
108 ++hit; in SUITE()
113 ++hit; in SUITE()
118 ++hit; in SUITE()
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| /dports/biology/vsearch/vsearch-2.17.1/src/ |
| H A D | searchcore.cc | 255 void align_trim(struct hit * hit) in align_trim() argument
331 hit->internal_indels = hit->nwindels in align_trim()
335 hit->internal_gaps = hit->nwgaps in align_trim()
340 hit->id0 = hit->shortest > 0 ? 100.0 * hit->matches / hit->shortest : 0.0; in align_trim()
357 hit->id = hit->id0; in align_trim()
360 hit->id = hit->id1; in align_trim()
363 hit->id = hit->id2; in align_trim()
366 hit->id = hit->id3; in align_trim()
369 hit->id = hit->id4; in align_trim()
538 struct hit * hit = si->hits + x; in align_delayed() local
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| /dports/devel/pycharm-pro/pycharm-2020.2.3/plugins/python/helpers/pydev/pydev_tests_python/ |
| H A D | test_frame_eval_and_tracing.py | 46 assert hit.line == 10
51 assert hit.line == 11
59 assert hit.line == 2
76 writer.write_get_frame(hit.thread_id, hit.frame_id)
82 assert hit.line == 8
108 assert hit.line == 4
112 writer.write_get_frame(hit.thread_id, hit.frame_id)
117 assert hit.line == 4
121 writer.write_get_frame(hit.thread_id, hit.frame_id)
138 assert hit.line == 10
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| /dports/emulators/mess/mame-mame0226/src/mame/machine/ |
| H A D | kaneko_hit.cpp | 170 hit.x12 = (hit.x1p) - (hit.x2p + hit.x2s); in kaneko_hit_type0_r()
171 hit.y12 = (hit.y1p) - (hit.y2p + hit.y2s); in kaneko_hit_type0_r()
172 hit.x21 = (hit.x1p + hit.x1s) - (hit.x2p); in kaneko_hit_type0_r()
173 hit.y21 = (hit.y1p + hit.y1s) - (hit.y2p); in kaneko_hit_type0_r()
329 if ((hit.x2p >= hit.x1p) && (hit.x2p < (hit.x1p + hit.x1s))) // x2p inside x1 in calc_compute_x()
330 x_coll = (hit.x1s - (hit.x2p - hit.x1p)); in calc_compute_x()
331 else if ((hit.x1p >= hit.x2p) && (hit.x1p < (hit.x2p + hit.x2s))) // x1p inside x2 in calc_compute_x()
334 x_coll = ((hit.x1s + hit.x2s)/2) - abs((hit.x1p + hit.x1s/2) - (hit.x2p + hit.x2s/2)); in calc_compute_x()
344 if ((hit.y2p >= hit.y1p) && (hit.y2p < (hit.y1p + hit.y1s))) // y2p inside y1 in calc_compute_y()
346 else if ((hit.y1p >= hit.y2p) && (hit.y1p < (hit.y2p + hit.y2s))) // y1p inside y2 in calc_compute_y()
[all …]
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| /dports/emulators/mame/mame-mame0226/src/mame/machine/ |
| H A D | kaneko_hit.cpp | 170 hit.x12 = (hit.x1p) - (hit.x2p + hit.x2s); in kaneko_hit_type0_r()
171 hit.y12 = (hit.y1p) - (hit.y2p + hit.y2s); in kaneko_hit_type0_r()
172 hit.x21 = (hit.x1p + hit.x1s) - (hit.x2p); in kaneko_hit_type0_r()
173 hit.y21 = (hit.y1p + hit.y1s) - (hit.y2p); in kaneko_hit_type0_r()
329 if ((hit.x2p >= hit.x1p) && (hit.x2p < (hit.x1p + hit.x1s))) // x2p inside x1 in calc_compute_x()
330 x_coll = (hit.x1s - (hit.x2p - hit.x1p)); in calc_compute_x()
331 else if ((hit.x1p >= hit.x2p) && (hit.x1p < (hit.x2p + hit.x2s))) // x1p inside x2 in calc_compute_x()
334 x_coll = ((hit.x1s + hit.x2s)/2) - abs((hit.x1p + hit.x1s/2) - (hit.x2p + hit.x2s/2)); in calc_compute_x()
344 if ((hit.y2p >= hit.y1p) && (hit.y2p < (hit.y1p + hit.y1s))) // y2p inside y1 in calc_compute_y()
346 else if ((hit.y1p >= hit.y2p) && (hit.y1p < (hit.y2p + hit.y2s))) // y1p inside y2 in calc_compute_y()
[all …]
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| /dports/biology/infernal/infernal-1.1.3/src/ |
| H A D | cm_tophits.c | 109 h->hit[i] = h->unsrt + (h->hit[i] - ori); in cm_tophits_Grow()
819 if (h->hit != NULL) free(h->hit); in cm_tophits_Destroy()
867 hit->stop = src_th->hit[h]->stop; in cm_tophits_CloneHitMostly()
869 hit->root = src_th->hit[h]->root; in cm_tophits_CloneHitMostly()
870 hit->mode = src_th->hit[h]->mode; in cm_tophits_CloneHitMostly()
872 hit->bias = src_th->hit[h]->bias; in cm_tophits_CloneHitMostly()
876 hit->srcL = src_th->hit[h]->srcL; in cm_tophits_CloneHitMostly()
1040 … if(th->hit[i]->any_oidx != -1) th->hit[i]->any_oidx = th->hit[th->hit[i]->any_oidx]->hit_idx; in remove_or_mark_overlaps_one_seq_fast()
1041 … if(th->hit[i]->win_oidx != -1) th->hit[i]->win_oidx = th->hit[th->hit[i]->win_oidx]->hit_idx; in remove_or_mark_overlaps_one_seq_fast()
3087 if (hit->start < hit->stop) { hit->in_rc = FALSE; } in main()
[all …]
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| /dports/x11-fm/nautilus/nautilus-41.1/src/ |
| H A D | nautilus-search-hit.c | 134 if (hit->fts_rank > 0) in G_DEFINE_TYPE()
154 return hit->uri; in nautilus_search_hit_get_uri()
160 return hit->relevance; in nautilus_search_hit_get_relevance()
166 return hit->fts_snippet; in nautilus_search_hit_get_fts_snippet()
173 g_free (hit->uri); in nautilus_search_hit_set_uri()
181 hit->fts_rank = rank; in nautilus_search_hit_set_fts_rank()
235 NautilusSearchHit *hit; in nautilus_search_hit_set_property() local
292 NautilusSearchHit *hit; in nautilus_search_hit_get_property() local
347 g_free (hit->uri); in nautilus_search_hit_finalize()
423 hit = G_TYPE_INSTANCE_GET_PRIVATE (hit, in nautilus_search_hit_init()
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| /dports/biology/p5-BioPerl/BioPerl-1.7.7/t/SearchIO/ |
| H A D | sim4.t | 21 my $hit = $r->next_hit;
24 is ($hit->length, 1086);
26 my $hsp = $hit->next_hsp;
34 $hsp = $hit->next_hsp;
49 $hit = $r->next_hit;
54 $hsp = $hit->next_hsp;
62 $hsp = $hit->next_hsp;
78 $hit = $r->next_hit;
106 $hit = $r->next_hit;
134 $hit = $r->next_hit;
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| /dports/graphics/embree/embree-3.13.2/kernels/geometry/ |
| H A D | subgrid_intersector_moeller.h | 61 hit.U = hit.absDen - hit.U; in intersect()
62 hit.V = hit.absDen - hit.V; in intersect()
88 hit.U = hit.absDen - hit.U; in occluded()
89 hit.V = hit.absDen - hit.V; in occluded()
206 hit.U = hit.absDen - hit.U;
207 hit.V = hit.absDen - hit.V;
242 hit.U = hit.absDen - hit.U;
290 hit.U = hit.absDen - hit.U;
291 hit.V = hit.absDen - hit.V;
314 hit.U = hit.absDen - hit.U;
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| H A D | subgrid_intersector_pluecker.h | 59 hit.U = hit.UVW - hit.U; in intersect()
60 hit.V = hit.UVW - hit.V; in intersect()
86 hit.U = hit.UVW - hit.U; in occluded()
87 hit.V = hit.UVW - hit.V; in occluded()
201 hit.U = hit.UVW - hit.U;
202 hit.V = hit.UVW - hit.V;
237 hit.U = hit.UVW - hit.U;
276 hit.U = hit.UVW - hit.U;
277 hit.V = hit.UVW - hit.V;
301 hit.U = hit.UVW - hit.U;
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| /dports/biology/infernal/infernal-1.1.3/hmmer/src/ |
| H A D | p7_tophits.c | 39 h->hit = NULL; in p7_tophits_Create()
90 h->hit[i] = h->unsrt + (h->hit[i] - ori); in p7_tophits_Grow()
157 *ret_hit = hit; in p7_tophits_CreateNextHit()
443 h1->hit[i] = h1->unsrt + (h1->hit[i] - ori1); in p7_tophits_Merge()
451 …new_hit[k] = (hit_sorter_by_sortkey(&h1->hit[i], &h2->hit[j]) > 0) ? new2 + (h2->hit[j++] - h2->un… in p7_tophits_Merge()
466 free(h1->hit); in p7_tophits_Merge()
635 if (h->hit != NULL) free(h->hit); in p7_tophits_Destroy()
802 …intersect_hmmend = (th->hit[i]->dcl[0].ad->hmmto < th->hit[j]->dcl[0].ad->hmmto) ? th->hit[i… in p7_tophits_RemoveDuplicates()
1129 if (th->hit[h]->acc != NULL && th->hit[h]->acc[0] != '\0') showname = th->hit[h]->acc; in p7_tophits_Targets()
1922 P7_HIT *hit; in p7_tophits_AliScores() local
[all …]
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| /dports/biology/hmmer/hmmer-3.3/src/ |
| H A D | p7_tophits.c | 39 h->hit = NULL; in p7_tophits_Create()
90 h->hit[i] = h->unsrt + (h->hit[i] - ori); in p7_tophits_Grow()
157 *ret_hit = hit; in p7_tophits_CreateNextHit()
443 h1->hit[i] = h1->unsrt + (h1->hit[i] - ori1); in p7_tophits_Merge()
451 …new_hit[k] = (hit_sorter_by_sortkey(&h1->hit[i], &h2->hit[j]) > 0) ? new2 + (h2->hit[j++] - h2->un… in p7_tophits_Merge()
466 free(h1->hit); in p7_tophits_Merge()
635 if (h->hit != NULL) free(h->hit); in p7_tophits_Destroy()
802 …intersect_hmmend = (th->hit[i]->dcl[0].ad->hmmto < th->hit[j]->dcl[0].ad->hmmto) ? th->hit[i… in p7_tophits_RemoveDuplicates()
1129 if (th->hit[h]->acc != NULL && th->hit[h]->acc[0] != '\0') showname = th->hit[h]->acc; in p7_tophits_Targets()
1922 P7_HIT *hit; in p7_tophits_AliScores() local
[all …]
|