| /dports/biology/samtools/samtools-1.14/test/split/ |
| H A D | test_filter_header_rg.c | 197 !sam_hdr_add_pg(hdr1, "samtools", "VN", samtools_version(), in main()
240 !sam_hdr_add_pg(hdr2, "samtools", "VN", samtools_version(), in main()
282 !sam_hdr_add_pg(hdr3, "samtools", "VN", samtools_version(), in main()
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| /dports/biology/py-pysam/pysam-0.18.0/samtools/ |
| H A D | bam_reheader.c | 77 if (!no_pg && sam_hdr_add_pg(h, "samtools", in bam_reheader()
135 if (!no_pg && sam_hdr_add_pg(cram_fd_get_header(out), "samtools", in cram_reheader()
207 if (!no_pg && sam_hdr_add_pg(cram_h, "samtools", "VN", samtools_version(), in cram_reheader_inplace2()
306 if (!no_pg && sam_hdr_add_pg(cram_h, "samtools", "VN", samtools_version(), in cram_reheader_inplace3()
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| H A D | bam_reheader.c.pysam.c | 79 if (!no_pg && sam_hdr_add_pg(h, "samtools", in bam_reheader()
137 if (!no_pg && sam_hdr_add_pg(cram_fd_get_header(out), "samtools", in cram_reheader()
209 if (!no_pg && sam_hdr_add_pg(cram_h, "samtools", "VN", samtools_version(), in cram_reheader_inplace2()
308 if (!no_pg && sam_hdr_add_pg(cram_h, "samtools", "VN", samtools_version(), in cram_reheader_inplace3()
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| H A D | bam_cat.c | 222 if (!no_pg && sam_hdr_add_pg(new_h, "samtools", in cram_cat()
347 if (!no_pg && sam_hdr_add_pg(h, "samtools", in bam_cat()
383 if (!no_pg && sam_hdr_add_pg(old, "samtools", in bam_cat()
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| H A D | bam_cat.c.pysam.c | 224 if (!no_pg && sam_hdr_add_pg(new_h, "samtools", in cram_cat()
349 if (!no_pg && sam_hdr_add_pg(h, "samtools", in bam_cat()
385 if (!no_pg && sam_hdr_add_pg(old, "samtools", in bam_cat()
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| H A D | bam_split.c | 333 if (!opts->no_pg && sam_hdr_add_pg(retval->unaccounted_header, "samtools", in init()
422 sam_hdr_add_pg(retval->rg_output_header[i], "samtools", in init()
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| H A D | bam_split.c.pysam.c | 335 if (!opts->no_pg && sam_hdr_add_pg(retval->unaccounted_header, "samtools", in init()
424 sam_hdr_add_pg(retval->rg_output_header[i], "samtools", in init()
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| H A D | bam_addrprg.c | 426 if (!opts->no_pg && sam_hdr_add_pg(state->output_header, "samtools", in readgroupise()
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| H A D | bam_addrprg.c.pysam.c | 428 if (!opts->no_pg && sam_hdr_add_pg(state->output_header, "samtools", in readgroupise()
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| H A D | bam_md.c | 308 if (!no_pg && sam_hdr_add_pg(header, "samtools", in bam_fillmd()
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| H A D | bam_md.c.pysam.c | 310 if (!no_pg && sam_hdr_add_pg(header, "samtools", in bam_fillmd()
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| H A D | bam_mate.c | 278 if (!no_pg && sam_hdr_add_pg(header, "samtools", in bam_mating_core()
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| H A D | bam_mate.c.pysam.c | 280 if (!no_pg && sam_hdr_add_pg(header, "samtools", in bam_mating_core()
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| H A D | bamshuf.c | 253 if (!no_pg && sam_hdr_add_pg(h, "samtools", in bamshuf()
|
| /dports/biology/samtools/samtools-1.14/ |
| H A D | bam_reheader.c | 77 if (!no_pg && sam_hdr_add_pg(h, "samtools", in bam_reheader()
135 if (!no_pg && sam_hdr_add_pg(cram_fd_get_header(out), "samtools", in cram_reheader()
207 if (!no_pg && sam_hdr_add_pg(cram_h, "samtools", "VN", samtools_version(), in cram_reheader_inplace2()
306 if (!no_pg && sam_hdr_add_pg(cram_h, "samtools", "VN", samtools_version(), in cram_reheader_inplace3()
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| H A D | bam_cat.c | 222 if (!no_pg && sam_hdr_add_pg(new_h, "samtools", in cram_cat()
347 if (!no_pg && sam_hdr_add_pg(h, "samtools", in bam_cat()
383 if (!no_pg && sam_hdr_add_pg(old, "samtools", in bam_cat()
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| H A D | bam_split.c | 333 if (!opts->no_pg && sam_hdr_add_pg(retval->unaccounted_header, "samtools", in init()
422 sam_hdr_add_pg(retval->rg_output_header[i], "samtools", in init()
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| H A D | bam_addrprg.c | 426 if (!opts->no_pg && sam_hdr_add_pg(state->output_header, "samtools", in readgroupise()
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| H A D | bam_md.c | 308 if (!no_pg && sam_hdr_add_pg(header, "samtools", in bam_fillmd()
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| H A D | bam_mate.c | 278 if (!no_pg && sam_hdr_add_pg(header, "samtools", in bam_mating_core()
|
| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/test/ |
| H A D | sam.c | 734 r = sam_hdr_add_pg(header, "samtools", "VN", "1.9", NULL); in use_header_api()
917 r = sam_hdr_add_pg(header, "prog3", NULL); in test_header_pg_lines()
921 r = sam_hdr_add_pg(header, "prog4", "PP", "prog1", NULL); in test_header_pg_lines()
928 r = sam_hdr_add_pg(header, "prog6", NULL); in test_header_pg_lines()
931 r = sam_hdr_add_pg(header, "prog7", "ID", "my_id", "PP", "prog6", NULL); in test_header_pg_lines()
941 r = sam_hdr_add_pg(header, "prog8", "ID", "my_id", NULL); in test_header_pg_lines()
944 r = sam_hdr_add_pg(header, "prog9", "PP", "non-existent", NULL); in test_header_pg_lines()
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| /dports/biology/htslib/htslib-1.14/test/ |
| H A D | sam.c | 734 r = sam_hdr_add_pg(header, "samtools", "VN", "1.9", NULL); in use_header_api()
917 r = sam_hdr_add_pg(header, "prog3", NULL); in test_header_pg_lines()
921 r = sam_hdr_add_pg(header, "prog4", "PP", "prog1", NULL); in test_header_pg_lines()
928 r = sam_hdr_add_pg(header, "prog6", NULL); in test_header_pg_lines()
931 r = sam_hdr_add_pg(header, "prog7", "ID", "my_id", "PP", "prog6", NULL); in test_header_pg_lines()
941 r = sam_hdr_add_pg(header, "prog8", "ID", "my_id", NULL); in test_header_pg_lines()
944 r = sam_hdr_add_pg(header, "prog9", "PP", "non-existent", NULL); in test_header_pg_lines()
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/htslib/ |
| H A D | cram.h | 527 #define sam_hdr_add_PG sam_hdr_add_pg
|
| /dports/biology/py-pysam/pysam-0.18.0/htslib/htslib/ |
| H A D | cram.h | 549 #define sam_hdr_add_PG sam_hdr_add_pg
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| /dports/biology/htslib/htslib-1.14/htslib/ |
| H A D | cram.h | 549 #define sam_hdr_add_PG sam_hdr_add_pg
|