| /dports/biology/emboss/EMBOSS-6.6.0/emboss/ |
| H A D | tranalign.c | 62 AjPSeq newseq = NULL; /* output aligned nucleic sequence */ in main() local
213 static void tranalign_AddGaps(AjPSeq newseq, in tranalign_AddGaps()
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| H A D | pasteseq.c | 43 AjPSeq newseq = NULL; /* the new sequence */ in main() local
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| H A D | extractalign.c | 47 AjPSeq newseq = NULL; in main() local
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| H A D | extractseq.c | 53 AjPSeq newseq = NULL; in main() local
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| /dports/textproc/scim-openvanilla/openvanilla-0.7.2.20070514/Modules/Experiments/OVIMAutoPhonetic/ |
| H A D | PhoneticSyllable.cpp | 166 string newseq; in keyPunctuation() local
282 string newseq=string(bpmf.standardLayoutCode()); in keyCompose() local
317 string newseq=string("_punctuation_")+string(1, k); in keyNonBPMF() local
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| /dports/biology/jalview/jalview/test/jalview/structure/ |
| H A D | Mapping.java | 245 SequenceI newseq = seqf.getViewport().getAlignment().getSequenceAt(0); in mapFer1From3W5V() local
272 SequenceI newseq = new Sequence(refseq.getName() + "Copy", in compareTransferredToRefPDBAnnot() local
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| /dports/math/GiNaC/ginac-1.8.2/ginac/ |
| H A D | pseries.cpp | 417 std::unique_ptr<epvector> newseq(conjugateepvector(seq)); in conjugate() local
459 std::unique_ptr<epvector> newseq(nullptr); in eval_integ() local
484 epvector newseq; in evalm() local
518 epvector newseq; in subs() local
529 epvector newseq; in expand() local
1063 epvector newseq = seq; in shift_exponents() local
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| /dports/databases/pglogical/pglogical-REL2_4_0/ |
| H A D | pglogical_sequences.c | 110 SeqStateTuple *newseq; in synchronize_sequences() local
189 SeqStateTuple *newseq; in synchronize_sequence() local
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| /dports/misc/lifelines/lifelines-3.1.1/src/liflines/ |
| H A D | lbrowse.c | 63 INDISEQ seq, newseq; in browse_list() local
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| /dports/biology/jalview/jalview/src/jalview/analysis/ |
| H A D | Dna.java | 212 SequenceI newseq = translateCodingRegion(selection.get(s), in translateCdna() local
648 SequenceI newseq = new Sequence(selection.getName(), in translateCodingRegion() local
838 SequenceI newseq = reverseSequence(selection.get(s).getName(), in reverseCdna() local
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| /dports/print/lout/lout-3.40/ |
| H A D | z20.c | 899 BOOLEAN found, gall; FULL_CHAR newtag[MAX_BUFF], newseq[MAX_BUFF]; in FlushGalley() local
1001 FULL_CHAR newseq[MAX_BUFF]; FILE_NUM tfnum; long tfpos, tcont; in FlushGalley() local
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| /dports/math/jts/jts-jts-1.18.1/modules/core/src/main/java/org/locationtech/jts/geom/ |
| H A D | CoordinateSequences.java | 146 CoordinateSequence newseq = fact.create(size, seq.getDimension()); in createClosedRing() local
157 CoordinateSequence newseq = fact.create(size, seq.getDimension()); in extend() local
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| /dports/astro/siril/siril/src/stacking/ |
| H A D | upscaling.c | 180 sequence *newseq = readseqfile(seqname); in upscale_sequence() local
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| /dports/biology/wise/wise2.4.1/src/dynlibsrc/ |
| H A D | hsplookupscan.c | 169 char newseq[5]; in one_off_HSPscan_scan_query_direct() local
443 char newseq[5]; in one_off_HSPscan_scan_query() local
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| /dports/biology/seaview/seaview/ |
| H A D | load_seq.cxx | 122 char *name, *newseq, *tmp, *p, *q; in load_seq_callback() local
287 int add_seq_to_align(SEA_VIEW *view, char *newname, char *newseq, int lenseq, bool no_gui) in add_seq_to_align()
643 char *p, *newseq, *q, **newcolseq; in edit_sequence_callback() local
848 char *newseq, *p, *residues, unknown; in cre_consensus() local
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| /dports/biology/jalview/jalview/src/jalview/io/ |
| H A D | SimpleBlastFile.java | 260 Sequence newseq = new Sequence(idstring, in parse() local
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| H A D | JPredFile.java | 252 StringBuffer newseq = new StringBuffer(); in parse() local
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| /dports/math/pynac/pynac-pynac-0.7.27/ginac/ |
| H A D | pseries.cpp | 416 std::unique_ptr<epvector> newseq(conjugateepvector(seq)); in conjugate() local
467 epvector newseq; in subs() local
478 epvector newseq; in expand() local
1032 epvector newseq = seq; in shift_exponents() local
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| /dports/multimedia/mplayer/mplayer-export-2021-12-29/stream/ |
| H A D | rtp.c | 93 int newseq; in rtp_cache() local
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| /dports/multimedia/v4l_compat/linux-5.13-rc2/net/netfilter/ |
| H A D | nf_conntrack_seqadj.c | 170 __be32 newseq, newack; in nf_ct_seq_adjust() local
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| /dports/multimedia/libv4l/linux-5.13-rc2/net/netfilter/ |
| H A D | nf_conntrack_seqadj.c | 170 __be32 newseq, newack; in nf_ct_seq_adjust() local
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| /dports/multimedia/v4l-utils/linux-5.13-rc2/net/netfilter/ |
| H A D | nf_conntrack_seqadj.c | 170 __be32 newseq, newack; in nf_ct_seq_adjust() local
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| /dports/multimedia/mencoder/mplayer-export-2021-12-29/stream/ |
| H A D | rtp.c | 93 int newseq; in rtp_cache() local
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| /dports/emulators/mess/mame-mame0226/src/emu/ |
| H A D | ioport.cpp | 730 void ioport_field::set_defseq(input_seq_type seqtype, const input_seq &newseq) in set_defseq()
1896 …et_type_seq(ioport_type type, int player, input_seq_type seqtype, const input_seq &newseq) noexcept in set_type_seq()
2093 input_seq newseq[SEQ_TYPE_TOTAL]; in load_config() local
2234 …default_config(util::xml::data_node const *portnode, int type, int player, const input_seq *newseq) in load_default_config()
2255 …ad_game_config(util::xml::data_node const *portnode, int type, int player, const input_seq *newseq) in load_game_config()
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| /dports/emulators/mame/mame-mame0226/src/emu/ |
| H A D | ioport.cpp | 730 void ioport_field::set_defseq(input_seq_type seqtype, const input_seq &newseq) in set_defseq()
1896 …et_type_seq(ioport_type type, int player, input_seq_type seqtype, const input_seq &newseq) noexcept in set_type_seq()
2093 input_seq newseq[SEQ_TYPE_TOTAL]; in load_config() local
2234 …default_config(util::xml::data_node const *portnode, int type, int player, const input_seq *newseq) in load_default_config()
2255 …ad_game_config(util::xml::data_node const *portnode, int type, int player, const input_seq *newseq) in load_game_config()
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