/dports/biology/py-biopython/biopython-1.79/Tests/Hmmer/ |
H A D | text_31b2_hmmscan_001.out | 132 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 144 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 161 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 178 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 197 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 216 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 235 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 254 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 273 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 297 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc [all …]
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H A D | text_31b2_hmmsearch_002.out | 36 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 48 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 67 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 79 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 91 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 110 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 136 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 169 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 188 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 207 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc [all …]
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H A D | text_30_hmmsearch_003.out | 33 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 39 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 45 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 51 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 57 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 63 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 69 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
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H A D | text_31b2_hmmsearch_001.out | 36 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 48 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 67 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 79 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 91 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 110 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 136 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 169 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 188 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 207 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
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H A D | text_31b2_phmmer_001.out | 35 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 57 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 74 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 103 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 120 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 139 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 158 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 175 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 187 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 199 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc [all …]
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H A D | text_30_hmmscan_007.out | 30 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 35 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 40 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 46 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 51 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
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H A D | text_31b1_hmmscan_001.out | 53 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 98 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 110 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 155 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 188 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 209 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 258 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 270 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 283 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 302 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc [all …]
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H A D | text_30_hmmscan_001.out | 51 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 96 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 108 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 151 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 184 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 235 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 247 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 260 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 279 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 291 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
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H A D | text_30_hmmscan_006.out | 29 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 41 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 54 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 73 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 85 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
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H A D | text_30_hmmscan_009.out | 27 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 52 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 71 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 84 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 117 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
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H A D | text_30_hmmscan_010.out | 35 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 136 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 192 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 263 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 319 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 390 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 461 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 510 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 582 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 608 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc [all …]
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H A D | text_30_hmmscan_004.out | 25 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 37 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
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/dports/biology/hmmer/hmmer-3.3/easel/demotic/examples/ |
H A D | example.phmmer.out | 39 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 61 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 80 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 99 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 118 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 137 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 156 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 168 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 187 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 206 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc [all …]
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H A D | example.hmmsearch.out | 36 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 60 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 77 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 94 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 111 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 128 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 145 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 162 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 174 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 186 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc [all …]
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/dports/biology/infernal/infernal-1.1.3/easel/demotic/examples/ |
H A D | example.phmmer.out | 39 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 61 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 80 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 99 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 118 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 137 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 156 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 168 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 187 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 206 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc [all …]
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H A D | example.hmmsearch.out | 36 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 60 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 77 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 94 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 111 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 128 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 145 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 162 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 174 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 186 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc [all …]
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/dports/science/chrono/chrono-7.0.1/src/chrono_thirdparty/HACDv2/ |
H A D | dgPlane.h | 35 hacd::HaF32 Evalue (const hacd::HaF32 *point) const; 36 hacd::HaF32 Evalue (const dgVector &point) const; 47 hacd::HaF64 Evalue (const hacd::HaF32 *point) const; 49 hacd::HaF64 Evalue (const hacd::HaF64 *point) const; 51 hacd::HaF64 Evalue (const dgVector &point) const; 52 hacd::HaF64 Evalue (const dgBigVector &point) const; 86 HACD_INLINE hacd::HaF32 dgPlane::Evalue (const hacd::HaF32 *point) const in Evalue() function 91 HACD_INLINE hacd::HaF32 dgPlane::Evalue (const dgVector &point) const in Evalue() function 126 HACD_INLINE hacd::HaF64 dgBigPlane::Evalue (const hacd::HaF32 *point) const in Evalue() function 132 HACD_INLINE hacd::HaF64 dgBigPlane::Evalue (const hacd::HaF64 *point) const in Evalue() function [all …]
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/dports/biology/mothur/mothur-1.46.1/source/uchime_src/ |
H A D | evalue.h | 19 double ComputeMinScoreGivenEvalueAGapped(double Evalue, unsigned Area); 20 double ComputeMinScoreGivenEvalueAUngapped(double Evalue, unsigned Area); 21 double ComputeMinScoreGivenEvalueQGapped(double Evalue, unsigned QueryLength); 22 double ComputeMinScoreGivenEvalueQUngapped(double Evalue, unsigned QueryLength);
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/dports/biology/py-biopython/biopython-1.79/Tests/Compass/ |
H A D | comtest2 | 5 Smith-Waterman score = 35 Evalue = 1.01e+03 15 Smith-Waterman score = 35 Evalue = 1.01e+03 25 Smith-Waterman score = 37 Evalue = 5.75e+02 35 Smith-Waterman score = 37 Evalue = 5.75e+02
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/dports/biology/hhsuite/hh-suite-3.3.0/scripts/ |
H A D | pdbfilter.pl | 85 my $Evalue; # BLAST E-value 192 $Evalue=$1; 193 $Evalue=~s/^e/1e/; 194 $Evalue=~s/,$//; 203 if ($id>=$idmax && $Evalue<=$Evalmin && $cov>=$covmin && $resol<=$resol{$pdbid}) {
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/dports/biology/hmmer/hmmer-3.3/documentation/userguide/inclusions/ |
H A D | hmmsearch-fn3-sevenless.out3 | 2 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
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H A D | hmmsearch-fn3-uniprot.out | 2 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
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H A D | hmmscan-minifam-sevenless.out2 | 3 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
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/dports/biology/infernal/infernal-1.1.3/hmmer/documentation/userguide/inclusions/ |
H A D | hmmsearch-fn3-sevenless.out3 | 2 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
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H A D | hmmsearch-fn3-uniprot.out | 2 … # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
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