| Name | Date | Size | #Lines | LOC | ||
|---|---|---|---|---|---|---|
| .. | 01-Sep-2021 | - | ||||
| addtargets2.cpp | H A D | 01-Sep-2021 | 1.1 KiB | 39 | 32 | |
| alignchime.cpp | H A D | 01-Sep-2021 | 14.6 KiB | 650 | 450 | |
| alignchimel.cpp | H A D | 01-Sep-2021 | 8.5 KiB | 418 | 329 | |
| allocs.h | H A D | 01-Sep-2021 | 275 | 25 | 24 | |
| alnheuristics.h | H A D | 01-Sep-2021 | 570 | 30 | 21 | |
| alnparams.cpp | H A D | 01-Sep-2021 | 8 KiB | 415 | 360 | |
| alnparams.h | H A D | 01-Sep-2021 | 1.2 KiB | 60 | 41 | |
| alpha.cpp | H A D | 01-Sep-2021 | 69.2 KiB | 2,762 | 2,748 | |
| alpha.h | H A D | 01-Sep-2021 | 1.4 KiB | 51 | 40 | |
| alpha2.cpp | H A D | 01-Sep-2021 | 2.2 KiB | 101 | 85 | |
| chainer.h | H A D | 01-Sep-2021 | 1.9 KiB | 80 | 64 | |
| chime.h | H A D | 01-Sep-2021 | 2.1 KiB | 105 | 83 | |
| counters.h | H A D | 01-Sep-2021 | 597 | 40 | 39 | |
| diagbox.h | H A D | 01-Sep-2021 | 4.3 KiB | 194 | 129 | |
| dp.h | H A D | 01-Sep-2021 | 5 KiB | 165 | 128 | |
| evalue.h | H A D | 01-Sep-2021 | 1 KiB | 26 | 21 | |
| fractid.cpp | H A D | 01-Sep-2021 | 9 KiB | 450 | 376 | |
| getparents.cpp | H A D | 01-Sep-2021 | 1.8 KiB | 90 | 67 | |
| globalalign2.cpp | H A D | 01-Sep-2021 | 1,005 | 46 | 38 | |
| help.h | H A D | 01-Sep-2021 | 4.9 KiB | 128 | 127 | |
| hsp.h | H A D | 01-Sep-2021 | 2 KiB | 115 | 93 | |
| hspfinder.h | H A D | 01-Sep-2021 | 187 | 14 | 10 | |
| make3way.cpp | H A D | 01-Sep-2021 | 3.4 KiB | 174 | 160 | |
| makefile | H A D | 01-Sep-2021 | 669 | 29 | 17 | |
| mx.cpp | H A D | 01-Sep-2021 | 6.8 KiB | 295 | 246 | |
| mx.h | H A D | 01-Sep-2021 | 9.9 KiB | 455 | 383 | |
| myopts.h | H A D | 01-Sep-2021 | 6 KiB | 191 | 184 | |
| myutils.cpp | H A D | 01-Sep-2021 | 41.4 KiB | 1,845 | 1,620 | |
| myutils.h | H A D | 01-Sep-2021 | 7.6 KiB | 275 | 212 | |
| orf.h | H A D | 01-Sep-2021 | 1,019 | 38 | 31 | |
| out.h | H A D | 01-Sep-2021 | 3.2 KiB | 135 | 103 | |
| path.cpp | H A D | 01-Sep-2021 | 3 KiB | 152 | 126 | |
| path.h | H A D | 01-Sep-2021 | 885 | 64 | 58 | |
| searchchime.cpp | H A D | 01-Sep-2021 | 6.5 KiB | 305 | 245 | |
| seq.h | H A D | 01-Sep-2021 | 674 | 39 | 28 | |
| seqdb.cpp | H A D | 01-Sep-2021 | 6.5 KiB | 290 | 251 | |
| seqdb.h | H A D | 01-Sep-2021 | 2.2 KiB | 109 | 85 | |
| setnucmx.cpp | H A D | 01-Sep-2021 | 1.6 KiB | 78 | 60 | |
| sfasta.cpp | H A D | 01-Sep-2021 | 10 KiB | 468 | 395 | |
| sfasta.h | H A D | 01-Sep-2021 | 2 KiB | 94 | 50 | |
| svnmods.h | H A D | 01-Sep-2021 | 447 | 16 | 15 | |
| svnversion.h | H A D | 01-Sep-2021 | 5 | 2 | 1 | |
| timers.h | H A D | 01-Sep-2021 | 2.7 KiB | 174 | 169 | |
| timing.h | H A D | 01-Sep-2021 | 5.3 KiB | 239 | 195 | |
| tracebackbit.cpp | H A D | 01-Sep-2021 | 2.9 KiB | 181 | 154 | |
| uc.h | H A D | 01-Sep-2021 | 1.9 KiB | 61 | 54 | |
| uchime_main.cpp | H A D | 01-Sep-2021 | 4.5 KiB | 213 | 175 | |
| ultra.h | H A D | 01-Sep-2021 | 121 | 9 | 6 | |
| usort.cpp | H A D | 01-Sep-2021 | 1.8 KiB | 87 | 71 | |
| viterbifast.cpp | H A D | 01-Sep-2021 | 7.1 KiB | 379 | 287 | |
| windex.h | H A D | 01-Sep-2021 | 1.9 KiB | 72 | 64 | |
| writechhit.cpp | H A D | 01-Sep-2021 | 7.1 KiB | 330 | 277 |