| /dports/biology/mothur/mothur-1.46.1/source/ |
| H A D | needlemanoverlap.cpp | 31 alignment[0][i].prevCell = 'l'; // initialize first row by pointing all poiters to the left in NeedlemanOverlap()
36 alignment[i][0].prevCell = 'u'; // initialize first column by pointing all poiters upwards in NeedlemanOverlap()
75 alignment[i][j].prevCell = 'd'; in align()
79 alignment[i][j].prevCell = 'l'; in align()
85 alignment[i][j].prevCell = 'u'; in align()
89 alignment[i][j].prevCell = 'l'; in align()
131 alignment[i][j].prevCell = 'd'; in alignPrimer()
135 alignment[i][j].prevCell = 'l'; in alignPrimer()
141 alignment[i][j].prevCell = 'u'; in alignPrimer()
145 alignment[i][j].prevCell = 'l'; in alignPrimer()
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| H A D | gotohoverlap.cpp | 33 alignment[0][i].prevCell = 'l'; // the first row to the left in GotohOverlap()
39 alignment[i][0].prevCell = 'u'; // the first column upward in GotohOverlap()
71 alignment[i][j].prevCell = 'l'; in align()
75 alignment[i][j].prevCell = 'd'; in align()
81 alignment[i][j].prevCell = 'u'; in align()
85 alignment[i][j].prevCell = 'd'; in align()
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| H A D | overlap.cpp | 70 alignment[i][column].prevCell = 'u';// the pointer upwards or... in setOverlap()
76 alignment[row][i].prevCell = 'l'; // ...to the left in setOverlap()
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| /dports/databases/grass7/grass-7.8.6/raster/r.li/r.li.cwed/ |
| H A D | cwed.c | 300 CELL prevCell, corrCell, supCell; in calculate() local
361 Rast_set_c_null_value(&prevCell, 1); in calculate()
380 (corrCell != prevCell)) { in calculate()
384 c2.val.c = prevCell; in calculate()
403 prevCell = corrCell; in calculate()
526 (corrCell != prevCell)) { in calculateD()
530 c2.val.dc = prevCell; in calculateD()
549 prevCell = corrCell; in calculateD()
673 (corrCell != prevCell)) { in calculateF()
677 c2.val.fc = prevCell; in calculateF()
[all …]
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/align/ |
| H A D | dp_formula_dynamic.h | 179 DPCell_<TScoreValue, DynamicGaps> const & prevCell, in SEQAN_FUNC_ENABLE_IF()
186 if(!isGapExtension(prevCell, DynamicGapExtensionHorizontal())) in SEQAN_FUNC_ENABLE_IF()
194 DPCell_<TScoreValue, DynamicGaps> const & prevCell, in SEQAN_FUNC_ENABLE_IF()
209 DPCell_<TScoreValue, DynamicGaps> const & prevCell, in SEQAN_FUNC_ENABLE_IF()
216 if (!isGapExtension(prevCell, DynamicGapExtensionHorizontal())) in SEQAN_FUNC_ENABLE_IF()
227 DPCell_<TScoreValue, DynamicGaps> const & prevCell, in SEQAN_FUNC_ENABLE_IF()
246 DPCell_<TScoreValue, DynamicGaps> const & prevCell, in SEQAN_FUNC_ENABLE_IF()
253 if(!isGapExtension(prevCell, DynamicGapExtensionVertical())) in SEQAN_FUNC_ENABLE_IF()
261 DPCell_<TScoreValue, DynamicGaps> const & prevCell, in SEQAN_FUNC_ENABLE_IF()
283 if (!isGapExtension(prevCell, DynamicGapExtensionVertical())) in SEQAN_FUNC_ENABLE_IF()
[all …]
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align/ |
| H A D | dp_formula_dynamic.h | 179 DPCell_<TScoreValue, DynamicGaps> const & prevCell, in SEQAN_FUNC_ENABLE_IF()
186 if(!isGapExtension(prevCell, DynamicGapExtensionHorizontal())) in SEQAN_FUNC_ENABLE_IF()
194 DPCell_<TScoreValue, DynamicGaps> const & prevCell, in SEQAN_FUNC_ENABLE_IF()
209 DPCell_<TScoreValue, DynamicGaps> const & prevCell, in SEQAN_FUNC_ENABLE_IF()
216 if (!isGapExtension(prevCell, DynamicGapExtensionHorizontal())) in SEQAN_FUNC_ENABLE_IF()
227 DPCell_<TScoreValue, DynamicGaps> const & prevCell, in SEQAN_FUNC_ENABLE_IF()
246 DPCell_<TScoreValue, DynamicGaps> const & prevCell, in SEQAN_FUNC_ENABLE_IF()
253 if(!isGapExtension(prevCell, DynamicGapExtensionVertical())) in SEQAN_FUNC_ENABLE_IF()
261 DPCell_<TScoreValue, DynamicGaps> const & prevCell, in SEQAN_FUNC_ENABLE_IF()
283 if (!isGapExtension(prevCell, DynamicGapExtensionVertical())) in SEQAN_FUNC_ENABLE_IF()
[all …]
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/ |
| H A D | dp_formula_dynamic.h | 128 DPCell_<TScoreValue, DynamicGaps> const & prevCell, in _internalComputeScore() argument
135 if(!isGapExtension(prevCell, DynamicGapExtensionHorizontal())) in _internalComputeScore()
136 activeCell._score = _scoreOfCell(prevCell) + scoreGapOpenHorizontal(score, valH, valV); in _internalComputeScore()
143 DPCell_<TScoreValue, DynamicGaps> const & prevCell, in _internalComputeScore() argument
150 if (!isGapExtension(prevCell, DynamicGapExtensionHorizontal())) in _internalComputeScore()
165 DPCell_<TScoreValue, DynamicGaps> const & prevCell, in _internalComputeScore() argument
172 if(!isGapExtension(prevCell, DynamicGapExtensionVertical())) in _internalComputeScore()
173 activeCell._score = _scoreOfCell(prevCell) + scoreGapOpenVertical(score, valH, valV); in _internalComputeScore()
180 DPCell_<TScoreValue, DynamicGaps> const & prevCell, in _internalComputeScore() argument
187 if (!isGapExtension(prevCell, DynamicGapExtensionVertical())) in _internalComputeScore()
[all …]
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| /dports/databases/hbase/hbase-1.2.1/hbase-common/src/main/java/org/apache/hadoop/hbase/io/encoding/ |
| H A D | FastDiffDeltaEncoder.java | 245 int size = compressSingleKeyValue(out, cell, state.prevCell); in internalEncode()
247 state.prevCell = cell; in internalEncode()
251 private int compressSingleKeyValue(DataOutputStream out, Cell cell, Cell prevCell) in compressSingleKeyValue() argument
257 if (prevCell == null) { in compressSingleKeyValue()
267 int preKeyLength = KeyValueUtil.keyLength(prevCell); in compressSingleKeyValue()
268 int preValLength = prevCell.getValueLength(); in compressSingleKeyValue()
270 int commonPrefix = CellUtil.findCommonPrefixInFlatKey(cell, prevCell, true, false); in compressSingleKeyValue()
275 if (vLength == prevCell.getValueLength()) { in compressSingleKeyValue()
278 if (cell.getTypeByte() == prevCell.getTypeByte()) { in compressSingleKeyValue()
284 Bytes.toBytes(prevCell.getTimestamp())); in compressSingleKeyValue()
[all …]
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| H A D | DiffKeyDeltaEncoder.java | 201 int size = compressSingleKeyValue(out, cell, state.prevCell); in internalEncode()
203 state.prevCell = cell; in internalEncode()
207 private int compressSingleKeyValue(DataOutputStream out, Cell cell, Cell prevCell) in compressSingleKeyValue() argument
219 if (prevCell == null) { in compressSingleKeyValue()
233 int preKeyLength = KeyValueUtil.keyLength(prevCell); in compressSingleKeyValue()
234 commonPrefix = CellUtil.findCommonPrefixInFlatKey(cell, prevCell, true, false); in compressSingleKeyValue()
238 if (vLength == prevCell.getValueLength()) { in compressSingleKeyValue()
241 if (cell.getTypeByte() == prevCell.getTypeByte()) { in compressSingleKeyValue()
246 diffTimestamp = prevCell.getTimestamp() - timestamp; in compressSingleKeyValue()
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| /dports/databases/grass7/grass-7.8.6/raster/r.terraflow/ |
| H A D | nodata.cpp | 181 static nodataType prevCell; /* cell on left (gets initialized) */ in processWindow() local
195 prevCell.label = LABEL_UNDEF; in processWindow()
199 if(col == 0) prevCell.label = LABEL_UNDEF; /* no left cell */ in processWindow()
217 if(prevCell.valid) label = prevCell.label; in processWindow()
243 prevCell = pt = nodataType(row, col, crtlabel); in processWindow()
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| /dports/biology/mothur/mothur-1.46.1/source/datastructures/ |
| H A D | alignment.cpp | 83 …if(currentCell.prevCell == 'x'){ seqAaln = seqBaln = "NOALIGNMENT"; }//If there's an 'x' in the b… in traceBack()
86 while(currentCell.prevCell != 'x'){ // while the previous cell isn't an 'x', keep going... in traceBack()
88 if(currentCell.prevCell == 'u'){ // if the pointer to the previous cell is 'u', go up in the in traceBack()
95 …else if(currentCell.prevCell == 'l'){ // if the pointer to the previous cell is 'l', go to the le… in traceBack()
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| /dports/math/pdal/PDAL-2.3.0/filters/private/pnp/ |
| H A D | GridPnp.hpp | 412 Cell& prevCell = m_grid->cell(prevPos); in determinePointStatus() local
413 if (!prevCell.computed()) in determinePointStatus()
414 computeCell(prevCell, prevPos); in determinePointStatus()
415 double x2 = xval(prevCell.point()); in determinePointStatus()
416 double y2 = yval(prevCell.point()); in determinePointStatus()
424 edges.insert(prevCell.edges().begin(), prevCell.edges().end()); in determinePointStatus()
426 if (prevCell.inside()) in determinePointStatus()
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| /dports/databases/hbase/hbase-1.2.1/hbase-server/src/main/java/org/apache/hadoop/hbase/io/hfile/ |
| H A D | HFilePrettyPrinter.java | 464 private Cell prevCell = null; field in HFilePrettyPrinter.KeyValueStatsCollector
470 if (prevCell != null && in collect()
471 KeyValue.COMPARATOR.compareRows(prevCell, cell) != 0) { in collect()
478 prevCell = cell; in collect()
486 if (curRowBytes > maxRowBytes && prevCell != null) { in collectRow()
487 biggestRow = prevCell.getRow(); in collectRow()
503 if (prevCell == null) in toString()
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| /dports/misc/ompl/ompl-1.5.2/src/ompl/control/planners/pdst/src/ |
| H A D | PDST.cpp | 212 Cell *cell = nullptr, *prevCell = nullptr; in addMotion() local
220 if (duration > 0 && cell != prevCell) in addMotion()
225 prevCell->addMotion(newMotion); in addMotion()
233 std::swap(cell, prevCell); in addMotion()
236 prevCell->addMotion(motion); in addMotion()
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| /dports/java/openjdk11/jdk11u-jdk-11.0.13-8-1/src/java.desktop/share/native/common/font/ |
| H A D | AccelGlyphCache.c | 369 CacheCellInfo *currCell, *prevCell; in AccelGlyphCache_RemoveAllCellInfos() local
381 prevCell = currCell; in AccelGlyphCache_RemoveAllCellInfos()
383 prevCell->nextGCI = NULL; in AccelGlyphCache_RemoveAllCellInfos()
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| /dports/java/openjdk13/jdk13u-jdk-13.0.10-1-1/src/java.desktop/share/native/common/font/ |
| H A D | AccelGlyphCache.c | 369 CacheCellInfo *currCell, *prevCell; in AccelGlyphCache_RemoveAllCellInfos() local
381 prevCell = currCell; in AccelGlyphCache_RemoveAllCellInfos()
383 prevCell->nextGCI = NULL; in AccelGlyphCache_RemoveAllCellInfos()
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| /dports/java/openjdk11-jre/jdk11u-jdk-11.0.13-8-1/src/java.desktop/share/native/common/font/ |
| H A D | AccelGlyphCache.c | 369 CacheCellInfo *currCell, *prevCell; in AccelGlyphCache_RemoveAllCellInfos() local
381 prevCell = currCell; in AccelGlyphCache_RemoveAllCellInfos()
383 prevCell->nextGCI = NULL; in AccelGlyphCache_RemoveAllCellInfos()
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| /dports/java/openjdk8/jdk8u-jdk8u312-b07.1/jdk/src/share/native/sun/font/ |
| H A D | AccelGlyphCache.c | 369 CacheCellInfo *currCell, *prevCell; in AccelGlyphCache_RemoveAllCellInfos() local
381 prevCell = currCell; in AccelGlyphCache_RemoveAllCellInfos()
383 prevCell->nextGCI = NULL; in AccelGlyphCache_RemoveAllCellInfos()
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| /dports/java/openjdk12/openjdk-jdk12u-jdk-12.0.2-10-4/src/java.desktop/share/native/common/font/ |
| H A D | AccelGlyphCache.c | 369 CacheCellInfo *currCell, *prevCell; in AccelGlyphCache_RemoveAllCellInfos() local
381 prevCell = currCell; in AccelGlyphCache_RemoveAllCellInfos()
383 prevCell->nextGCI = NULL; in AccelGlyphCache_RemoveAllCellInfos()
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| /dports/java/openjdk15/jdk15u-jdk-15.0.6-1-1/src/java.desktop/share/native/common/font/ |
| H A D | AccelGlyphCache.c | 369 CacheCellInfo *currCell, *prevCell; in AccelGlyphCache_RemoveAllCellInfos() local
381 prevCell = currCell; in AccelGlyphCache_RemoveAllCellInfos()
383 prevCell->nextGCI = NULL; in AccelGlyphCache_RemoveAllCellInfos()
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| /dports/java/openjdk16/jdk16u-jdk-16.0.2-7-1/src/java.desktop/share/native/common/font/ |
| H A D | AccelGlyphCache.c | 369 CacheCellInfo *currCell, *prevCell; in AccelGlyphCache_RemoveAllCellInfos() local
381 prevCell = currCell; in AccelGlyphCache_RemoveAllCellInfos()
383 prevCell->nextGCI = NULL; in AccelGlyphCache_RemoveAllCellInfos()
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| /dports/java/openjdk17/jdk17u-jdk-17.0.1-12-1/src/java.desktop/share/native/common/font/ |
| H A D | AccelGlyphCache.c | 369 CacheCellInfo *currCell, *prevCell; in AccelGlyphCache_RemoveAllCellInfos() local
381 prevCell = currCell; in AccelGlyphCache_RemoveAllCellInfos()
383 prevCell->nextGCI = NULL; in AccelGlyphCache_RemoveAllCellInfos()
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| /dports/java/openjdk14/jdk14u-jdk-14.0.2-12-1/src/java.desktop/share/native/common/font/ |
| H A D | AccelGlyphCache.c | 369 CacheCellInfo *currCell, *prevCell; in AccelGlyphCache_RemoveAllCellInfos() local
381 prevCell = currCell; in AccelGlyphCache_RemoveAllCellInfos()
383 prevCell->nextGCI = NULL; in AccelGlyphCache_RemoveAllCellInfos()
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| /dports/java/openjdk8-jre/jdk8u-jdk8u312-b07.1/jdk/src/share/native/sun/font/ |
| H A D | AccelGlyphCache.c | 369 CacheCellInfo *currCell, *prevCell; in AccelGlyphCache_RemoveAllCellInfos() local
381 prevCell = currCell; in AccelGlyphCache_RemoveAllCellInfos()
383 prevCell->nextGCI = NULL; in AccelGlyphCache_RemoveAllCellInfos()
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| /dports/converters/wkhtmltopdf/qt-5db36ec/src/3rdparty/webkit/Source/WebCore/rendering/ |
| H A D | RenderTableCell.cpp | 402 if (RenderTableCell* prevCell = table->cellBefore(this)) { in collapsedStartBorder() local
403 …apsedBorderValue prevCellBorder = CollapsedBorderValue(&prevCell->style()->borderEnd(), prevCell->… in collapsedStartBorder()
529 RenderTableCell* prevCell = table->cellAbove(this); in collapsedBeforeBorder() local
530 if (prevCell) { in collapsedBeforeBorder()
532 …result = chooseBorder(CollapsedBorderValue(&prevCell->style()->borderAfter(), prevCell->style()->v… in collapsedBeforeBorder()
543 if (prevCell) { in collapsedBeforeBorder()
545 if (prevCell->section() == section()) in collapsedBeforeBorder()
548 prevRow = prevCell->section()->lastChild(); in collapsedBeforeBorder()
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