| H A D | hhdatabase.cpp | 304 Alignment tali(par.maxseq, par.maxres); in getTemplateHMM() local
321 tali.N_filtered = tali.Filter(par.max_seqid_db, S, par.coverage_db, in getTemplateHMM()
384 tali.Read(dbf, entry->name, par.mark, par.maxcol, par.nseqdis, line); in getTemplateA3M()
390 if(tali.L > sequence_length) { in getTemplateA3M()
434 Alignment tali(par.maxseq, par.maxres); in getTemplateHMM() local
435 tali.Read(dbf, name, par.mark, par.maxcol, par.nseqdis, line); in getTemplateHMM()
436 tali.Compress(name, par.cons, par.maxcol, par.M_template, par.Mgaps); in getTemplateHMM()
438 …tali.N_filtered = tali.Filter(par.max_seqid_db, S, par.coverage_db, par.qid_db, qsc, par.Ndiff_db); in getTemplateHMM()
491 Alignment& tali) { in getTemplateA3M() argument
528 tali = ali_tmp; in getTemplateA3M()
[all …]
|