| /dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/loops/ |
| H A D | multibranch_bt.c | 1223 tmp_en = fML_local[p][r - p] + in BT_mb_loop()
1226 tmp_en = my_fML[idx[r] + p] + in BT_mb_loop()
1232 if (e == tmp_en) in BT_mb_loop()
1271 if (e == tmp_en) { in BT_mb_loop()
1304 tmp_en = my_fML[idx[r] + p] + in BT_mb_loop()
1312 if (e == tmp_en) { in BT_mb_loop()
1351 if (e == tmp_en) { in BT_mb_loop()
1378 tmp_en = c_local[p][r - p] + in BT_mb_loop()
1381 tmp_en = my_c[idx[r] + p] + in BT_mb_loop()
1405 if (e == tmp_en) { in BT_mb_loop()
[all …]
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| /dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/ |
| H A D | subopt.c | 1339 int s5, s3, kj, tmp_en; in scan_interval() local
1343 tmp_en = 0; in scan_interval()
1462 int k, l, p, q, tmp_en; in scan_interval() local
1469 tmp_en = 0; in scan_interval()
1479 if (tmp_en <= threshold) { in scan_interval()
1659 int ik, s5, s3, tmp_en; in scan_interval() local
1663 tmp_en = 0; in scan_interval()
1763 int kj, s5, s3, tmp_en; in scan_interval() local
1767 tmp_en = 0; in scan_interval()
2221 int cnt, *p, *q, *en, tmp_en; in repeat() local
[all …]
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| H A D | move_set.c | 214 int tmp_en; in update_deepest() local
215 …tmp_en = str->energy + energy_of_move_pt(str->structure, Enc->s0, Enc->s1, Enc->bp_left, Enc->bp_r… in update_deepest()
218 tmp_en += energy_of_move_pt(str->structure, Enc->s0, Enc->s1, Enc->bp_left2, Enc->bp_right2); in update_deepest()
222 str->energy = tmp_en; in update_deepest()
241 …>1) { fprintf(stderr, " "); print_str(stderr, str->structure); fprintf(stderr, " %d\n", tmp_en); } in update_deepest()
244 if (tmp_en < min->energy) { in update_deepest()
245 min->energy = tmp_en; in update_deepest()
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| H A D | 2Dpfold.c | 3362 …FLT_OR_DBL tmp_en = exp_E_IntLoop(u1, j - l - 1, type, type_2, S1[i + 1], S1[j - 1], S1[k - 1], S1… in backtrack() local
3365 qbt1 += Q_B_rem[my_iindx[k] - l] * tmp_en; in backtrack()
3378 qbt1 += Q_B[my_iindx[k] - l][cnt1][cnt2 / 2] * tmp_en; in backtrack()
3435 …FLT_OR_DBL tmp_en = exp_E_IntLoop(u1, j - l - 1, type, type_2, S1[i + 1], S1[j - 1], S1[k - 1], S1… in backtrack() local
3441 qbt1 += Q_B[my_iindx[k] - l][cnt1][cnt2 / 2] * tmp_en; in backtrack()
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| /dports/biology/viennarna/ViennaRNA-2.4.18/src/RNAlocmin/ |
| H A D | move_set_inside.c | 206 int tmp_en; in update_deepest() local
207 …tmp_en = str->energy + energy_of_move_pt(str->structure, Enc->s0, Enc->s1, Enc->bp_left, Enc->bp_r… in update_deepest()
210 tmp_en += energy_of_move_pt(str->structure, Enc->s0, Enc->s1, Enc->bp_left2, Enc->bp_right2); in update_deepest()
214 str->energy = tmp_en; in update_deepest()
232 … { fprintf(stderr, " "); print_str(stderr, str->structure); fprintf(stderr, " %5d D\n", tmp_en); } in update_deepest()
236 min->energy = tmp_en; in update_deepest()
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| H A D | move_set_pk.cpp | 141 int tmp_en; in update_deepest() local
142 tmp_en = str->energy + str->MakeMove(Enc->seq, Enc->s0, Enc->s1, Enc->bp_left, Enc->bp_right); in update_deepest()
156 …lvl>1) { fprintf(stderr, " "); print_str_pk(stderr, str->str); fprintf(stderr, " %d\n", tmp_en); } in update_deepest()
159 if (tmp_en < min->energy) { in update_deepest()
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| /dports/science/qwalk/mainline-1.0.1-300-g1b7e381/src/method/ |
| H A D | Linear_optimization.cpp | 96 Array1 <doublevar> en,tmp_en; in run() local
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| /dports/multimedia/mencoder/mplayer-export-2021-12-29/ |
| H A D | configure | 3516 tmp_en=yes
3523 tmp_en=yes
3533 test "$language_msg_main" = en -a -z "$tmp_en" && language_msg="en $language_msg"
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| /dports/multimedia/mplayer/mplayer-export-2021-12-29/ |
| H A D | configure | 3516 tmp_en=yes
3523 tmp_en=yes
3533 test "$language_msg_main" = en -a -z "$tmp_en" && language_msg="en $language_msg"
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