1 /* ----------------------------------------------------------------------------
2  * This file was automatically generated by SWIG (http://www.swig.org).
3  * Version 4.0.2
4  *
5  * Do not make changes to this file unless you know what you are doing--modify
6  * the SWIG interface file instead.
7  * ----------------------------------------------------------------------------- */
8 
9 package btllib;
10 
11 public class btllibJNI {
SeqReader_SeqReaderFlag_FOLD_CASE_get()12   public final static native long SeqReader_SeqReaderFlag_FOLD_CASE_get();
SeqReader_SeqReaderFlag_NO_FOLD_CASE_get()13   public final static native long SeqReader_SeqReaderFlag_NO_FOLD_CASE_get();
SeqReader_SeqReaderFlag_NO_TRIM_MASKED_get()14   public final static native long SeqReader_SeqReaderFlag_NO_TRIM_MASKED_get();
SeqReader_SeqReaderFlag_TRIM_MASKED_get()15   public final static native long SeqReader_SeqReaderFlag_TRIM_MASKED_get();
SeqReader_SeqReaderFlag_SHORT_MODE_get()16   public final static native long SeqReader_SeqReaderFlag_SHORT_MODE_get();
SeqReader_SeqReaderFlag_LONG_MODE_get()17   public final static native long SeqReader_SeqReaderFlag_LONG_MODE_get();
new_SeqReaderFlag()18   public final static native long new_SeqReaderFlag();
delete_SeqReader_SeqReaderFlag(long jarg1)19   public final static native void delete_SeqReader_SeqReaderFlag(long jarg1);
new_SeqReader__SWIG_0(String jarg1, long jarg2, long jarg3)20   public final static native long new_SeqReader__SWIG_0(String jarg1, long jarg2, long jarg3);
new_SeqReader__SWIG_1(String jarg1, long jarg2)21   public final static native long new_SeqReader__SWIG_1(String jarg1, long jarg2);
new_SeqReader__SWIG_2(String jarg1)22   public final static native long new_SeqReader__SWIG_2(String jarg1);
delete_SeqReader(long jarg1)23   public final static native void delete_SeqReader(long jarg1);
SeqReader_close(long jarg1, SeqReader jarg1_)24   public final static native void SeqReader_close(long jarg1, SeqReader jarg1_);
SeqReader_fold_case(long jarg1, SeqReader jarg1_)25   public final static native boolean SeqReader_fold_case(long jarg1, SeqReader jarg1_);
SeqReader_trim_masked(long jarg1, SeqReader jarg1_)26   public final static native boolean SeqReader_trim_masked(long jarg1, SeqReader jarg1_);
SeqReader_short_mode(long jarg1, SeqReader jarg1_)27   public final static native boolean SeqReader_short_mode(long jarg1, SeqReader jarg1_);
SeqReader_long_mode(long jarg1, SeqReader jarg1_)28   public final static native boolean SeqReader_long_mode(long jarg1, SeqReader jarg1_);
SeqReader_get_format(long jarg1, SeqReader jarg1_)29   public final static native int SeqReader_get_format(long jarg1, SeqReader jarg1_);
SeqReader_SeqReaderRecord_num_set(long jarg1, SeqReader.SeqReaderRecord jarg1_, long jarg2)30   public final static native void SeqReader_SeqReaderRecord_num_set(long jarg1, SeqReader.SeqReaderRecord jarg1_, long jarg2);
SeqReader_SeqReaderRecord_num_get(long jarg1, SeqReader.SeqReaderRecord jarg1_)31   public final static native long SeqReader_SeqReaderRecord_num_get(long jarg1, SeqReader.SeqReaderRecord jarg1_);
SeqReader_SeqReaderRecord_name_set(long jarg1, SeqReader.SeqReaderRecord jarg1_, String jarg2)32   public final static native void SeqReader_SeqReaderRecord_name_set(long jarg1, SeqReader.SeqReaderRecord jarg1_, String jarg2);
SeqReader_SeqReaderRecord_name_get(long jarg1, SeqReader.SeqReaderRecord jarg1_)33   public final static native String SeqReader_SeqReaderRecord_name_get(long jarg1, SeqReader.SeqReaderRecord jarg1_);
SeqReader_SeqReaderRecord_comment_set(long jarg1, SeqReader.SeqReaderRecord jarg1_, String jarg2)34   public final static native void SeqReader_SeqReaderRecord_comment_set(long jarg1, SeqReader.SeqReaderRecord jarg1_, String jarg2);
SeqReader_SeqReaderRecord_comment_get(long jarg1, SeqReader.SeqReaderRecord jarg1_)35   public final static native String SeqReader_SeqReaderRecord_comment_get(long jarg1, SeqReader.SeqReaderRecord jarg1_);
SeqReader_SeqReaderRecord_seq_set(long jarg1, SeqReader.SeqReaderRecord jarg1_, String jarg2)36   public final static native void SeqReader_SeqReaderRecord_seq_set(long jarg1, SeqReader.SeqReaderRecord jarg1_, String jarg2);
SeqReader_SeqReaderRecord_seq_get(long jarg1, SeqReader.SeqReaderRecord jarg1_)37   public final static native String SeqReader_SeqReaderRecord_seq_get(long jarg1, SeqReader.SeqReaderRecord jarg1_);
SeqReader_SeqReaderRecord_qual_set(long jarg1, SeqReader.SeqReaderRecord jarg1_, String jarg2)38   public final static native void SeqReader_SeqReaderRecord_qual_set(long jarg1, SeqReader.SeqReaderRecord jarg1_, String jarg2);
SeqReader_SeqReaderRecord_qual_get(long jarg1, SeqReader.SeqReaderRecord jarg1_)39   public final static native String SeqReader_SeqReaderRecord_qual_get(long jarg1, SeqReader.SeqReaderRecord jarg1_);
new_SeqReaderRecord()40   public final static native long new_SeqReaderRecord();
delete_SeqReader_SeqReaderRecord(long jarg1)41   public final static native void delete_SeqReader_SeqReaderRecord(long jarg1);
SeqReader_read(long jarg1, SeqReader jarg1_)42   public final static native long SeqReader_read(long jarg1, SeqReader jarg1_);
SeqReader_MAX_SIMULTANEOUS_SEQREADERS_get()43   public final static native long SeqReader_MAX_SIMULTANEOUS_SEQREADERS_get();
BIT_MASKS_get()44   public final static native long BIT_MASKS_get();
KMER_BLOOM_FILTER_MAGIC_HEADER_get()45   public final static native String KMER_BLOOM_FILTER_MAGIC_HEADER_get();
SEED_BLOOM_FILTER_MAGIC_HEADER_get()46   public final static native String SEED_BLOOM_FILTER_MAGIC_HEADER_get();
MAX_HASH_VALUES_get()47   public final static native long MAX_HASH_VALUES_get();
pop_cnt_byte(long jarg1)48   public final static native long pop_cnt_byte(long jarg1);
new_BloomFilter__SWIG_0()49   public final static native long new_BloomFilter__SWIG_0();
new_BloomFilter__SWIG_1(long jarg1, long jarg2)50   public final static native long new_BloomFilter__SWIG_1(long jarg1, long jarg2);
new_BloomFilter__SWIG_2(String jarg1)51   public final static native long new_BloomFilter__SWIG_2(String jarg1);
delete_BloomFilter(long jarg1)52   public final static native void delete_BloomFilter(long jarg1);
BloomFilter_insert__SWIG_0(long jarg1, BloomFilter jarg1_, long jarg2)53   public final static native void BloomFilter_insert__SWIG_0(long jarg1, BloomFilter jarg1_, long jarg2);
BloomFilter_insert__SWIG_1(long jarg1, BloomFilter jarg1_, long jarg2)54   public final static native void BloomFilter_insert__SWIG_1(long jarg1, BloomFilter jarg1_, long jarg2);
BloomFilter_contains__SWIG_0(long jarg1, BloomFilter jarg1_, long jarg2)55   public final static native boolean BloomFilter_contains__SWIG_0(long jarg1, BloomFilter jarg1_, long jarg2);
BloomFilter_contains__SWIG_1(long jarg1, BloomFilter jarg1_, long jarg2)56   public final static native boolean BloomFilter_contains__SWIG_1(long jarg1, BloomFilter jarg1_, long jarg2);
BloomFilter_get_bytes(long jarg1, BloomFilter jarg1_)57   public final static native long BloomFilter_get_bytes(long jarg1, BloomFilter jarg1_);
BloomFilter_get_pop_cnt(long jarg1, BloomFilter jarg1_)58   public final static native long BloomFilter_get_pop_cnt(long jarg1, BloomFilter jarg1_);
BloomFilter_get_occupancy(long jarg1, BloomFilter jarg1_)59   public final static native double BloomFilter_get_occupancy(long jarg1, BloomFilter jarg1_);
BloomFilter_get_hash_num(long jarg1, BloomFilter jarg1_)60   public final static native long BloomFilter_get_hash_num(long jarg1, BloomFilter jarg1_);
BloomFilter_get_fpr(long jarg1, BloomFilter jarg1_)61   public final static native double BloomFilter_get_fpr(long jarg1, BloomFilter jarg1_);
BloomFilter_write(long jarg1, BloomFilter jarg1_, String jarg2)62   public final static native void BloomFilter_write(long jarg1, BloomFilter jarg1_, String jarg2);
BloomFilter_parse_header(long jarg1, String jarg2)63   public final static native long BloomFilter_parse_header(long jarg1, String jarg2);
new_KmerBloomFilter__SWIG_0()64   public final static native long new_KmerBloomFilter__SWIG_0();
new_KmerBloomFilter__SWIG_1(long jarg1, long jarg2, long jarg3)65   public final static native long new_KmerBloomFilter__SWIG_1(long jarg1, long jarg2, long jarg3);
new_KmerBloomFilter__SWIG_2(String jarg1)66   public final static native long new_KmerBloomFilter__SWIG_2(String jarg1);
KmerBloomFilter_insert__SWIG_0(long jarg1, KmerBloomFilter jarg1_, String jarg2, long jarg3)67   public final static native void KmerBloomFilter_insert__SWIG_0(long jarg1, KmerBloomFilter jarg1_, String jarg2, long jarg3);
KmerBloomFilter_insert__SWIG_1(long jarg1, KmerBloomFilter jarg1_, String jarg2)68   public final static native void KmerBloomFilter_insert__SWIG_1(long jarg1, KmerBloomFilter jarg1_, String jarg2);
KmerBloomFilter_contains__SWIG_0(long jarg1, KmerBloomFilter jarg1_, String jarg2, long jarg3)69   public final static native long KmerBloomFilter_contains__SWIG_0(long jarg1, KmerBloomFilter jarg1_, String jarg2, long jarg3);
KmerBloomFilter_contains__SWIG_1(long jarg1, KmerBloomFilter jarg1_, String jarg2)70   public final static native long KmerBloomFilter_contains__SWIG_1(long jarg1, KmerBloomFilter jarg1_, String jarg2);
KmerBloomFilter_contains__SWIG_2(long jarg1, KmerBloomFilter jarg1_, long jarg2)71   public final static native boolean KmerBloomFilter_contains__SWIG_2(long jarg1, KmerBloomFilter jarg1_, long jarg2);
KmerBloomFilter_contains__SWIG_3(long jarg1, KmerBloomFilter jarg1_, long jarg2)72   public final static native boolean KmerBloomFilter_contains__SWIG_3(long jarg1, KmerBloomFilter jarg1_, long jarg2);
KmerBloomFilter_get_bytes(long jarg1, KmerBloomFilter jarg1_)73   public final static native long KmerBloomFilter_get_bytes(long jarg1, KmerBloomFilter jarg1_);
KmerBloomFilter_get_pop_cnt(long jarg1, KmerBloomFilter jarg1_)74   public final static native long KmerBloomFilter_get_pop_cnt(long jarg1, KmerBloomFilter jarg1_);
KmerBloomFilter_get_occupancy(long jarg1, KmerBloomFilter jarg1_)75   public final static native double KmerBloomFilter_get_occupancy(long jarg1, KmerBloomFilter jarg1_);
KmerBloomFilter_get_hash_num(long jarg1, KmerBloomFilter jarg1_)76   public final static native long KmerBloomFilter_get_hash_num(long jarg1, KmerBloomFilter jarg1_);
KmerBloomFilter_get_fpr(long jarg1, KmerBloomFilter jarg1_)77   public final static native double KmerBloomFilter_get_fpr(long jarg1, KmerBloomFilter jarg1_);
KmerBloomFilter_get_k(long jarg1, KmerBloomFilter jarg1_)78   public final static native long KmerBloomFilter_get_k(long jarg1, KmerBloomFilter jarg1_);
KmerBloomFilter_get_bloom_filter(long jarg1, KmerBloomFilter jarg1_)79   public final static native long KmerBloomFilter_get_bloom_filter(long jarg1, KmerBloomFilter jarg1_);
KmerBloomFilter_write(long jarg1, KmerBloomFilter jarg1_, String jarg2)80   public final static native void KmerBloomFilter_write(long jarg1, KmerBloomFilter jarg1_, String jarg2);
delete_KmerBloomFilter(long jarg1)81   public final static native void delete_KmerBloomFilter(long jarg1);
new_SeedBloomFilter__SWIG_0()82   public final static native long new_SeedBloomFilter__SWIG_0();
new_SeedBloomFilter__SWIG_1(long jarg1, long jarg2, long jarg3, long jarg4)83   public final static native long new_SeedBloomFilter__SWIG_1(long jarg1, long jarg2, long jarg3, long jarg4);
new_SeedBloomFilter__SWIG_2(String jarg1)84   public final static native long new_SeedBloomFilter__SWIG_2(String jarg1);
SeedBloomFilter_insert__SWIG_0(long jarg1, SeedBloomFilter jarg1_, String jarg2, long jarg3)85   public final static native void SeedBloomFilter_insert__SWIG_0(long jarg1, SeedBloomFilter jarg1_, String jarg2, long jarg3);
SeedBloomFilter_insert__SWIG_1(long jarg1, SeedBloomFilter jarg1_, String jarg2)86   public final static native void SeedBloomFilter_insert__SWIG_1(long jarg1, SeedBloomFilter jarg1_, String jarg2);
SeedBloomFilter_contains__SWIG_0(long jarg1, SeedBloomFilter jarg1_, String jarg2, long jarg3)87   public final static native long SeedBloomFilter_contains__SWIG_0(long jarg1, SeedBloomFilter jarg1_, String jarg2, long jarg3);
SeedBloomFilter_contains__SWIG_1(long jarg1, SeedBloomFilter jarg1_, String jarg2)88   public final static native long SeedBloomFilter_contains__SWIG_1(long jarg1, SeedBloomFilter jarg1_, String jarg2);
SeedBloomFilter_contains__SWIG_2(long jarg1, SeedBloomFilter jarg1_, long jarg2)89   public final static native boolean SeedBloomFilter_contains__SWIG_2(long jarg1, SeedBloomFilter jarg1_, long jarg2);
SeedBloomFilter_contains__SWIG_3(long jarg1, SeedBloomFilter jarg1_, long jarg2)90   public final static native boolean SeedBloomFilter_contains__SWIG_3(long jarg1, SeedBloomFilter jarg1_, long jarg2);
SeedBloomFilter_get_bytes(long jarg1, SeedBloomFilter jarg1_)91   public final static native long SeedBloomFilter_get_bytes(long jarg1, SeedBloomFilter jarg1_);
SeedBloomFilter_get_pop_cnt(long jarg1, SeedBloomFilter jarg1_)92   public final static native long SeedBloomFilter_get_pop_cnt(long jarg1, SeedBloomFilter jarg1_);
SeedBloomFilter_get_occupancy(long jarg1, SeedBloomFilter jarg1_)93   public final static native double SeedBloomFilter_get_occupancy(long jarg1, SeedBloomFilter jarg1_);
SeedBloomFilter_get_hash_num(long jarg1, SeedBloomFilter jarg1_)94   public final static native long SeedBloomFilter_get_hash_num(long jarg1, SeedBloomFilter jarg1_);
SeedBloomFilter_get_fpr(long jarg1, SeedBloomFilter jarg1_)95   public final static native double SeedBloomFilter_get_fpr(long jarg1, SeedBloomFilter jarg1_);
SeedBloomFilter_get_k(long jarg1, SeedBloomFilter jarg1_)96   public final static native long SeedBloomFilter_get_k(long jarg1, SeedBloomFilter jarg1_);
SeedBloomFilter_get_seeds(long jarg1, SeedBloomFilter jarg1_)97   public final static native long SeedBloomFilter_get_seeds(long jarg1, SeedBloomFilter jarg1_);
SeedBloomFilter_get_parsed_seeds(long jarg1, SeedBloomFilter jarg1_)98   public final static native long SeedBloomFilter_get_parsed_seeds(long jarg1, SeedBloomFilter jarg1_);
SeedBloomFilter_get_hash_num_per_seed(long jarg1, SeedBloomFilter jarg1_)99   public final static native long SeedBloomFilter_get_hash_num_per_seed(long jarg1, SeedBloomFilter jarg1_);
SeedBloomFilter_get_kmer_bloom_filter(long jarg1, SeedBloomFilter jarg1_)100   public final static native long SeedBloomFilter_get_kmer_bloom_filter(long jarg1, SeedBloomFilter jarg1_);
SeedBloomFilter_write(long jarg1, SeedBloomFilter jarg1_, String jarg2)101   public final static native void SeedBloomFilter_write(long jarg1, SeedBloomFilter jarg1_, String jarg2);
delete_SeedBloomFilter(long jarg1)102   public final static native void delete_SeedBloomFilter(long jarg1);
COMPLEMENTS_get()103   public final static native String COMPLEMENTS_get();
CAPITALS_get()104   public final static native String CAPITALS_get();
reverse_complement(long jarg1)105   public final static native void reverse_complement(long jarg1);
get_reverse_complement(String jarg1)106   public final static native String get_reverse_complement(String jarg1);
KMER_COUNTING_BLOOM_FILTER_MAGIC_HEADER_get()107   public final static native String KMER_COUNTING_BLOOM_FILTER_MAGIC_HEADER_get();
Indexlr_IndexlrFlag_ID_get()108   public final static native long Indexlr_IndexlrFlag_ID_get();
Indexlr_IndexlrFlag_NO_ID_get()109   public final static native long Indexlr_IndexlrFlag_NO_ID_get();
Indexlr_IndexlrFlag_BX_get()110   public final static native long Indexlr_IndexlrFlag_BX_get();
Indexlr_IndexlrFlag_NO_BX_get()111   public final static native long Indexlr_IndexlrFlag_NO_BX_get();
Indexlr_IndexlrFlag_SEQ_get()112   public final static native long Indexlr_IndexlrFlag_SEQ_get();
Indexlr_IndexlrFlag_NO_SEQ_get()113   public final static native long Indexlr_IndexlrFlag_NO_SEQ_get();
Indexlr_IndexlrFlag_FILTER_IN_get()114   public final static native long Indexlr_IndexlrFlag_FILTER_IN_get();
Indexlr_IndexlrFlag_NO_FILTER_IN_get()115   public final static native long Indexlr_IndexlrFlag_NO_FILTER_IN_get();
Indexlr_IndexlrFlag_FILTER_OUT_get()116   public final static native long Indexlr_IndexlrFlag_FILTER_OUT_get();
Indexlr_IndexlrFlag_NO_FILTER_OUT_get()117   public final static native long Indexlr_IndexlrFlag_NO_FILTER_OUT_get();
Indexlr_IndexlrFlag_SHORT_MODE_get()118   public final static native long Indexlr_IndexlrFlag_SHORT_MODE_get();
Indexlr_IndexlrFlag_LONG_MODE_get()119   public final static native long Indexlr_IndexlrFlag_LONG_MODE_get();
new_IndexlrFlag()120   public final static native long new_IndexlrFlag();
delete_Indexlr_IndexlrFlag(long jarg1)121   public final static native void delete_Indexlr_IndexlrFlag(long jarg1);
Indexlr_output_id(long jarg1, Indexlr jarg1_)122   public final static native boolean Indexlr_output_id(long jarg1, Indexlr jarg1_);
Indexlr_output_bx(long jarg1, Indexlr jarg1_)123   public final static native boolean Indexlr_output_bx(long jarg1, Indexlr jarg1_);
Indexlr_output_seq(long jarg1, Indexlr jarg1_)124   public final static native boolean Indexlr_output_seq(long jarg1, Indexlr jarg1_);
Indexlr_filter_in(long jarg1, Indexlr jarg1_)125   public final static native boolean Indexlr_filter_in(long jarg1, Indexlr jarg1_);
Indexlr_filter_out(long jarg1, Indexlr jarg1_)126   public final static native boolean Indexlr_filter_out(long jarg1, Indexlr jarg1_);
Indexlr_short_mode(long jarg1, Indexlr jarg1_)127   public final static native boolean Indexlr_short_mode(long jarg1, Indexlr jarg1_);
Indexlr_long_mode(long jarg1, Indexlr jarg1_)128   public final static native boolean Indexlr_long_mode(long jarg1, Indexlr jarg1_);
new_Indexlr_Minimizer__SWIG_0()129   public final static native long new_Indexlr_Minimizer__SWIG_0();
new_Indexlr_Minimizer__SWIG_1(long jarg1, long jarg2, long jarg3, boolean jarg4, String jarg5)130   public final static native long new_Indexlr_Minimizer__SWIG_1(long jarg1, long jarg2, long jarg3, boolean jarg4, String jarg5);
Indexlr_Minimizer_min_hash_set(long jarg1, Indexlr.Minimizer jarg1_, long jarg2)131   public final static native void Indexlr_Minimizer_min_hash_set(long jarg1, Indexlr.Minimizer jarg1_, long jarg2);
Indexlr_Minimizer_min_hash_get(long jarg1, Indexlr.Minimizer jarg1_)132   public final static native long Indexlr_Minimizer_min_hash_get(long jarg1, Indexlr.Minimizer jarg1_);
Indexlr_Minimizer_out_hash_set(long jarg1, Indexlr.Minimizer jarg1_, long jarg2)133   public final static native void Indexlr_Minimizer_out_hash_set(long jarg1, Indexlr.Minimizer jarg1_, long jarg2);
Indexlr_Minimizer_out_hash_get(long jarg1, Indexlr.Minimizer jarg1_)134   public final static native long Indexlr_Minimizer_out_hash_get(long jarg1, Indexlr.Minimizer jarg1_);
Indexlr_Minimizer_pos_set(long jarg1, Indexlr.Minimizer jarg1_, long jarg2)135   public final static native void Indexlr_Minimizer_pos_set(long jarg1, Indexlr.Minimizer jarg1_, long jarg2);
Indexlr_Minimizer_pos_get(long jarg1, Indexlr.Minimizer jarg1_)136   public final static native long Indexlr_Minimizer_pos_get(long jarg1, Indexlr.Minimizer jarg1_);
Indexlr_Minimizer_forward_set(long jarg1, Indexlr.Minimizer jarg1_, boolean jarg2)137   public final static native void Indexlr_Minimizer_forward_set(long jarg1, Indexlr.Minimizer jarg1_, boolean jarg2);
Indexlr_Minimizer_forward_get(long jarg1, Indexlr.Minimizer jarg1_)138   public final static native boolean Indexlr_Minimizer_forward_get(long jarg1, Indexlr.Minimizer jarg1_);
Indexlr_Minimizer_seq_set(long jarg1, Indexlr.Minimizer jarg1_, String jarg2)139   public final static native void Indexlr_Minimizer_seq_set(long jarg1, Indexlr.Minimizer jarg1_, String jarg2);
Indexlr_Minimizer_seq_get(long jarg1, Indexlr.Minimizer jarg1_)140   public final static native String Indexlr_Minimizer_seq_get(long jarg1, Indexlr.Minimizer jarg1_);
delete_Indexlr_Minimizer(long jarg1)141   public final static native void delete_Indexlr_Minimizer(long jarg1);
new_Indexlr_IndexlrRecord__SWIG_0()142   public final static native long new_Indexlr_IndexlrRecord__SWIG_0();
new_Indexlr_IndexlrRecord__SWIG_1(long jarg1, String jarg2, String jarg3, long jarg4, long jarg5)143   public final static native long new_Indexlr_IndexlrRecord__SWIG_1(long jarg1, String jarg2, String jarg3, long jarg4, long jarg5);
Indexlr_IndexlrRecord_num_set(long jarg1, Indexlr.IndexlrRecord jarg1_, long jarg2)144   public final static native void Indexlr_IndexlrRecord_num_set(long jarg1, Indexlr.IndexlrRecord jarg1_, long jarg2);
Indexlr_IndexlrRecord_num_get(long jarg1, Indexlr.IndexlrRecord jarg1_)145   public final static native long Indexlr_IndexlrRecord_num_get(long jarg1, Indexlr.IndexlrRecord jarg1_);
Indexlr_IndexlrRecord_id_set(long jarg1, Indexlr.IndexlrRecord jarg1_, String jarg2)146   public final static native void Indexlr_IndexlrRecord_id_set(long jarg1, Indexlr.IndexlrRecord jarg1_, String jarg2);
Indexlr_IndexlrRecord_id_get(long jarg1, Indexlr.IndexlrRecord jarg1_)147   public final static native String Indexlr_IndexlrRecord_id_get(long jarg1, Indexlr.IndexlrRecord jarg1_);
Indexlr_IndexlrRecord_barcode_set(long jarg1, Indexlr.IndexlrRecord jarg1_, String jarg2)148   public final static native void Indexlr_IndexlrRecord_barcode_set(long jarg1, Indexlr.IndexlrRecord jarg1_, String jarg2);
Indexlr_IndexlrRecord_barcode_get(long jarg1, Indexlr.IndexlrRecord jarg1_)149   public final static native String Indexlr_IndexlrRecord_barcode_get(long jarg1, Indexlr.IndexlrRecord jarg1_);
Indexlr_IndexlrRecord_readlen_set(long jarg1, Indexlr.IndexlrRecord jarg1_, long jarg2)150   public final static native void Indexlr_IndexlrRecord_readlen_set(long jarg1, Indexlr.IndexlrRecord jarg1_, long jarg2);
Indexlr_IndexlrRecord_readlen_get(long jarg1, Indexlr.IndexlrRecord jarg1_)151   public final static native long Indexlr_IndexlrRecord_readlen_get(long jarg1, Indexlr.IndexlrRecord jarg1_);
Indexlr_IndexlrRecord_minimizers_set(long jarg1, Indexlr.IndexlrRecord jarg1_, long jarg2)152   public final static native void Indexlr_IndexlrRecord_minimizers_set(long jarg1, Indexlr.IndexlrRecord jarg1_, long jarg2);
Indexlr_IndexlrRecord_minimizers_get(long jarg1, Indexlr.IndexlrRecord jarg1_)153   public final static native long Indexlr_IndexlrRecord_minimizers_get(long jarg1, Indexlr.IndexlrRecord jarg1_);
delete_Indexlr_IndexlrRecord(long jarg1)154   public final static native void delete_Indexlr_IndexlrRecord(long jarg1);
Indexlr_get_minimizers(long jarg1, Indexlr jarg1_)155   public final static native long Indexlr_get_minimizers(long jarg1, Indexlr jarg1_);
new_Indexlr__SWIG_0(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, boolean jarg6, long jarg7, BloomFilter jarg7_, long jarg8, BloomFilter jarg8_)156   public final static native long new_Indexlr__SWIG_0(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, boolean jarg6, long jarg7, BloomFilter jarg7_, long jarg8, BloomFilter jarg8_);
new_Indexlr__SWIG_1(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, boolean jarg6, long jarg7, BloomFilter jarg7_)157   public final static native long new_Indexlr__SWIG_1(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, boolean jarg6, long jarg7, BloomFilter jarg7_);
new_Indexlr__SWIG_2(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, boolean jarg6)158   public final static native long new_Indexlr__SWIG_2(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, boolean jarg6);
new_Indexlr__SWIG_3(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5)159   public final static native long new_Indexlr__SWIG_3(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5);
new_Indexlr__SWIG_4(String jarg1, long jarg2, long jarg3, long jarg4)160   public final static native long new_Indexlr__SWIG_4(String jarg1, long jarg2, long jarg3, long jarg4);
new_Indexlr__SWIG_5(String jarg1, long jarg2, long jarg3)161   public final static native long new_Indexlr__SWIG_5(String jarg1, long jarg2, long jarg3);
delete_Indexlr(long jarg1)162   public final static native void delete_Indexlr(long jarg1);
Indexlr_MAX_SIMULTANEOUS_INDEXLRS_get()163   public final static native long Indexlr_MAX_SIMULTANEOUS_INDEXLRS_get();
CP_OFF_get()164   public final static native long CP_OFF_get();
MULTISHIFT_get()165   public final static native int MULTISHIFT_get();
MULTISEED_get()166   public final static native long MULTISEED_get();
SEED_A_get()167   public final static native long SEED_A_get();
SEED_C_get()168   public final static native long SEED_C_get();
SEED_G_get()169   public final static native long SEED_G_get();
SEED_T_get()170   public final static native long SEED_T_get();
SEED_N_get()171   public final static native long SEED_N_get();
ASCII_SIZE_get()172   public final static native int ASCII_SIZE_get();
SEED_TAB_get()173   public final static native long SEED_TAB_get();
A33R_get()174   public final static native long A33R_get();
A31L_get()175   public final static native long A31L_get();
C33R_get()176   public final static native long C33R_get();
C31L_get()177   public final static native long C31L_get();
G33R_get()178   public final static native long G33R_get();
G31L_get()179   public final static native long G31L_get();
T33R_get()180   public final static native long T33R_get();
T31L_get()181   public final static native long T31L_get();
N33R_get()182   public final static native long N33R_get();
N31L_get()183   public final static native long N31L_get();
MS_TAB_33R_get()184   public final static native long MS_TAB_33R_get();
MS_TAB_31L_get()185   public final static native long MS_TAB_31L_get();
RC_CONVERT_TAB_get()186   public final static native long RC_CONVERT_TAB_get();
CONVERT_TAB_get()187   public final static native long CONVERT_TAB_get();
DIMER_TAB_get()188   public final static native long DIMER_TAB_get();
TRIMER_TAB_get()189   public final static native long TRIMER_TAB_get();
TETRAMER_TAB_get()190   public final static native long TETRAMER_TAB_get();
rol1(long jarg1)191   public final static native long rol1(long jarg1);
rolx(long jarg1, long jarg2)192   public final static native long rolx(long jarg1, long jarg2);
ror1(long jarg1)193   public final static native long ror1(long jarg1);
rol31(long jarg1, long jarg2)194   public final static native long rol31(long jarg1, long jarg2);
rol33(long jarg1, long jarg2)195   public final static native long rol33(long jarg1, long jarg2);
swapbits033(long jarg1)196   public final static native long swapbits033(long jarg1);
swapbits3263(long jarg1)197   public final static native long swapbits3263(long jarg1);
swapxbits033(long jarg1, long jarg2)198   public final static native long swapxbits033(long jarg1, long jarg2);
ntf64__SWIG_0(String jarg1, long jarg2)199   public final static native long ntf64__SWIG_0(String jarg1, long jarg2);
ntr64__SWIG_0(String jarg1, long jarg2)200   public final static native long ntr64__SWIG_0(String jarg1, long jarg2);
ntf64__SWIG_1(long jarg1, long jarg2, short jarg3, short jarg4)201   public final static native long ntf64__SWIG_1(long jarg1, long jarg2, short jarg3, short jarg4);
ntr64__SWIG_1(long jarg1, long jarg2, short jarg3, short jarg4)202   public final static native long ntr64__SWIG_1(long jarg1, long jarg2, short jarg3, short jarg4);
ntc64__SWIG_0(String jarg1, long jarg2)203   public final static native long ntc64__SWIG_0(String jarg1, long jarg2);
ntc64__SWIG_1(String jarg1, long jarg2, long jarg3, long jarg4)204   public final static native long ntc64__SWIG_1(String jarg1, long jarg2, long jarg3, long jarg4);
ntc64__SWIG_2(short jarg1, short jarg2, long jarg3, long jarg4, long jarg5)205   public final static native long ntc64__SWIG_2(short jarg1, short jarg2, long jarg3, long jarg4, long jarg5);
ntf64l(long jarg1, long jarg2, short jarg3, short jarg4)206   public final static native long ntf64l(long jarg1, long jarg2, short jarg3, short jarg4);
ntr64l(long jarg1, long jarg2, short jarg3, short jarg4)207   public final static native long ntr64l(long jarg1, long jarg2, short jarg3, short jarg4);
ntc64l(short jarg1, short jarg2, long jarg3, long jarg4, long jarg5)208   public final static native long ntc64l(short jarg1, short jarg2, long jarg3, long jarg4, long jarg5);
ntf64__SWIG_2(String jarg1, long jarg2, long jarg3)209   public final static native long ntf64__SWIG_2(String jarg1, long jarg2, long jarg3);
ntc64__SWIG_3(String jarg1, long jarg2, long jarg3)210   public final static native long ntc64__SWIG_3(String jarg1, long jarg2, long jarg3);
ntm64__SWIG_0(String jarg1, long jarg2, long jarg3, long jarg4)211   public final static native void ntm64__SWIG_0(String jarg1, long jarg2, long jarg3, long jarg4);
nte64(long jarg1, long jarg2, long jarg3)212   public final static native long nte64(long jarg1, long jarg2, long jarg3);
ntm64__SWIG_1(short jarg1, short jarg2, long jarg3, long jarg4, long jarg5)213   public final static native void ntm64__SWIG_1(short jarg1, short jarg2, long jarg3, long jarg4, long jarg5);
ntmc64__SWIG_0(String jarg1, long jarg2, long jarg3, long jarg4)214   public final static native void ntmc64__SWIG_0(String jarg1, long jarg2, long jarg3, long jarg4);
ntmc64__SWIG_1(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, long jarg6)215   public final static native void ntmc64__SWIG_1(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, long jarg6);
ntmc64__SWIG_2(short jarg1, short jarg2, long jarg3, long jarg4, long jarg5, long jarg6, long jarg7)216   public final static native void ntmc64__SWIG_2(short jarg1, short jarg2, long jarg3, long jarg4, long jarg5, long jarg6, long jarg7);
ntc64__SWIG_4(String jarg1, long jarg2, long jarg3, long jarg4)217   public final static native boolean ntc64__SWIG_4(String jarg1, long jarg2, long jarg3, long jarg4);
ntmc64__SWIG_3(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5)218   public final static native boolean ntmc64__SWIG_3(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5);
ntc64__SWIG_5(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, long jarg6)219   public final static native boolean ntc64__SWIG_5(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, long jarg6);
ntmc64__SWIG_4(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, long jarg6, long jarg7)220   public final static native boolean ntmc64__SWIG_4(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, long jarg6, long jarg7);
ntmc64__SWIG_5(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, long jarg6, long jarg7, long jarg8)221   public final static native boolean ntmc64__SWIG_5(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, long jarg6, long jarg7, long jarg8);
ntmc64__SWIG_6(short jarg1, short jarg2, long jarg3, long jarg4, long jarg5, long jarg6, long jarg7, long jarg8)222   public final static native void ntmc64__SWIG_6(short jarg1, short jarg2, long jarg3, long jarg4, long jarg5, long jarg6, long jarg7, long jarg8);
mask_hash(long jarg1, long jarg2, String jarg3, String jarg4, long jarg5)223   public final static native long mask_hash(long jarg1, long jarg2, String jarg3, String jarg4, long jarg5);
sub_hash(long jarg1, long jarg2, String jarg3, long jarg4, long jarg5, long jarg6, long jarg7, long jarg8)224   public final static native void sub_hash(long jarg1, long jarg2, String jarg3, long jarg4, long jarg5, long jarg6, long jarg7, long jarg8);
nts64__SWIG_0(String jarg1, long jarg2, long jarg3, long jarg4)225   public final static native long nts64__SWIG_0(String jarg1, long jarg2, long jarg3, long jarg4);
nts64__SWIG_1(String jarg1, long jarg2, short jarg3, short jarg4, long jarg5, long jarg6)226   public final static native long nts64__SWIG_1(String jarg1, long jarg2, short jarg3, short jarg4, long jarg5, long jarg6);
ntms64__SWIG_0(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, long jarg6, long jarg7, long jarg8, long jarg9)227   public final static native boolean ntms64__SWIG_0(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, long jarg6, long jarg7, long jarg8, long jarg9);
ntms64__SWIG_1(String jarg1, long jarg2, short jarg3, short jarg4, long jarg5, long jarg6, long jarg7, long jarg8, long jarg9, long jarg10)228   public final static native void ntms64__SWIG_1(String jarg1, long jarg2, short jarg3, short jarg4, long jarg5, long jarg6, long jarg7, long jarg8, long jarg9, long jarg10);
ntmsm64__SWIG_0(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, long jarg6, long jarg7, long jarg8, long jarg9)229   public final static native boolean ntmsm64__SWIG_0(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, long jarg6, long jarg7, long jarg8, long jarg9);
ntmsm64__SWIG_1(String jarg1, long jarg2, short jarg3, short jarg4, long jarg5, long jarg6, long jarg7, long jarg8, long jarg9, long jarg10)230   public final static native void ntmsm64__SWIG_1(String jarg1, long jarg2, short jarg3, short jarg4, long jarg5, long jarg6, long jarg7, long jarg8, long jarg9, long jarg10);
parse_seeds(long jarg1)231   public final static native long parse_seeds(long jarg1);
new_NtHash__SWIG_0(String jarg1, long jarg2, long jarg3, long jarg4)232   public final static native long new_NtHash__SWIG_0(String jarg1, long jarg2, long jarg3, long jarg4);
new_NtHash__SWIG_1(String jarg1, long jarg2, long jarg3)233   public final static native long new_NtHash__SWIG_1(String jarg1, long jarg2, long jarg3);
NtHash_roll(long jarg1, NtHash jarg1_)234   public final static native boolean NtHash_roll(long jarg1, NtHash jarg1_);
NtHash_sub(long jarg1, NtHash jarg1_, long jarg2, long jarg3)235   public final static native void NtHash_sub(long jarg1, NtHash jarg1_, long jarg2, long jarg3);
NtHash_hashes(long jarg1, NtHash jarg1_)236   public final static native long NtHash_hashes(long jarg1, NtHash jarg1_);
NtHash_get_pos(long jarg1, NtHash jarg1_)237   public final static native long NtHash_get_pos(long jarg1, NtHash jarg1_);
NtHash_forward(long jarg1, NtHash jarg1_)238   public final static native boolean NtHash_forward(long jarg1, NtHash jarg1_);
NtHash_get_k(long jarg1, NtHash jarg1_)239   public final static native long NtHash_get_k(long jarg1, NtHash jarg1_);
NtHash_get_hash_num(long jarg1, NtHash jarg1_)240   public final static native long NtHash_get_hash_num(long jarg1, NtHash jarg1_);
delete_NtHash(long jarg1)241   public final static native void delete_NtHash(long jarg1);
new_SeedNtHash__SWIG_0(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, long jarg6)242   public final static native long new_SeedNtHash__SWIG_0(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, long jarg6);
new_SeedNtHash__SWIG_1(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5)243   public final static native long new_SeedNtHash__SWIG_1(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5);
new_SeedNtHash__SWIG_2(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5)244   public final static native long new_SeedNtHash__SWIG_2(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5);
new_SeedNtHash__SWIG_3(String jarg1, long jarg2, long jarg3, long jarg4)245   public final static native long new_SeedNtHash__SWIG_3(String jarg1, long jarg2, long jarg3, long jarg4);
new_SeedNtHash__SWIG_4(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, long jarg6)246   public final static native long new_SeedNtHash__SWIG_4(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5, long jarg6);
new_SeedNtHash__SWIG_5(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5)247   public final static native long new_SeedNtHash__SWIG_5(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5);
new_SeedNtHash__SWIG_6(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5)248   public final static native long new_SeedNtHash__SWIG_6(String jarg1, long jarg2, long jarg3, long jarg4, long jarg5);
new_SeedNtHash__SWIG_7(String jarg1, long jarg2, long jarg3, long jarg4)249   public final static native long new_SeedNtHash__SWIG_7(String jarg1, long jarg2, long jarg3, long jarg4);
SeedNtHash_hashes(long jarg1, SeedNtHash jarg1_)250   public final static native long SeedNtHash_hashes(long jarg1, SeedNtHash jarg1_);
SeedNtHash_get_pos(long jarg1, SeedNtHash jarg1_)251   public final static native long SeedNtHash_get_pos(long jarg1, SeedNtHash jarg1_);
SeedNtHash_forward(long jarg1, SeedNtHash jarg1_)252   public final static native boolean SeedNtHash_forward(long jarg1, SeedNtHash jarg1_);
SeedNtHash_get_k(long jarg1, SeedNtHash jarg1_)253   public final static native long SeedNtHash_get_k(long jarg1, SeedNtHash jarg1_);
SeedNtHash_get_hash_num(long jarg1, SeedNtHash jarg1_)254   public final static native long SeedNtHash_get_hash_num(long jarg1, SeedNtHash jarg1_);
SeedNtHash_get_hash_num_per_seed(long jarg1, SeedNtHash jarg1_)255   public final static native long SeedNtHash_get_hash_num_per_seed(long jarg1, SeedNtHash jarg1_);
SeedNtHash_roll(long jarg1, SeedNtHash jarg1_)256   public final static native boolean SeedNtHash_roll(long jarg1, SeedNtHash jarg1_);
delete_SeedNtHash(long jarg1)257   public final static native void delete_SeedNtHash(long jarg1);
new_SeqWriter__SWIG_0(String jarg1, int jarg2, boolean jarg3)258   public final static native long new_SeqWriter__SWIG_0(String jarg1, int jarg2, boolean jarg3);
new_SeqWriter__SWIG_1(String jarg1, int jarg2)259   public final static native long new_SeqWriter__SWIG_1(String jarg1, int jarg2);
new_SeqWriter__SWIG_2(String jarg1)260   public final static native long new_SeqWriter__SWIG_2(String jarg1);
SeqWriter_close(long jarg1, SeqWriter jarg1_)261   public final static native void SeqWriter_close(long jarg1, SeqWriter jarg1_);
SeqWriter_write__SWIG_0(long jarg1, SeqWriter jarg1_, String jarg2, String jarg3, String jarg4, String jarg5)262   public final static native void SeqWriter_write__SWIG_0(long jarg1, SeqWriter jarg1_, String jarg2, String jarg3, String jarg4, String jarg5);
SeqWriter_write__SWIG_1(long jarg1, SeqWriter jarg1_, String jarg2, String jarg3, String jarg4)263   public final static native void SeqWriter_write__SWIG_1(long jarg1, SeqWriter jarg1_, String jarg2, String jarg3, String jarg4);
delete_SeqWriter(long jarg1)264   public final static native void delete_SeqWriter(long jarg1);
PIPE_READ_END_get()265   public final static native int PIPE_READ_END_get();
PIPE_WRITE_END_get()266   public final static native int PIPE_WRITE_END_get();
COMM_BUFFER_SIZE_get()267   public final static native int COMM_BUFFER_SIZE_get();
PIPE_PERMISSIONS_get()268   public final static native long PIPE_PERMISSIONS_get();
process_spawner_initialized()269   public final static native long process_spawner_initialized();
process_spawner_parent2child_fd()270   public final static native long process_spawner_parent2child_fd();
process_spawner_child2parent_fd()271   public final static native long process_spawner_child2parent_fd();
process_spawner_comm_mutex()272   public final static native long process_spawner_comm_mutex();
new_pipe_id()273   public final static native long new_pipe_id();
pipeline_map()274   public final static native long pipeline_map();
get_pipepath(long jarg1)275   public final static native String get_pipepath(long jarg1);
read_from_child(long jarg1, long jarg2)276   public final static native void read_from_child(long jarg1, long jarg2);
write_to_child(long jarg1, long jarg2)277   public final static native void write_to_child(long jarg1, long jarg2);
check_children_failures()278   public final static native void check_children_failures();
end_child()279   public final static native void end_child();
read_from_parent(long jarg1, long jarg2)280   public final static native void read_from_parent(long jarg1, long jarg2);
write_to_parent(long jarg1, long jarg2)281   public final static native void write_to_parent(long jarg1, long jarg2);
new_DataStream(String jarg1, int jarg2)282   public final static native long new_DataStream(String jarg1, int jarg2);
delete_DataStream(long jarg1)283   public final static native void delete_DataStream(long jarg1);
DataStream_close(long jarg1, DataStream jarg1_)284   public final static native void DataStream_close(long jarg1, DataStream jarg1_);
DataStream___ref__(long jarg1, DataStream jarg1_)285   public final static native long DataStream___ref__(long jarg1, DataStream jarg1_);
DataStream___deref__(long jarg1, DataStream jarg1_)286   public final static native long DataStream___deref__(long jarg1, DataStream jarg1_);
new_DataSource(String jarg1)287   public final static native long new_DataSource(String jarg1);
delete_DataSource(long jarg1)288   public final static native void delete_DataSource(long jarg1);
new_DataSink__SWIG_0(String jarg1, boolean jarg2)289   public final static native long new_DataSink__SWIG_0(String jarg1, boolean jarg2);
new_DataSink__SWIG_1(String jarg1)290   public final static native long new_DataSink__SWIG_1(String jarg1);
delete_DataSink(long jarg1)291   public final static native void delete_DataSink(long jarg1);
new_DataStreamPipeline__SWIG_0()292   public final static native long new_DataStreamPipeline__SWIG_0();
new_DataStreamPipeline__SWIG_1(int jarg1, long jarg2, long jarg3)293   public final static native long new_DataStreamPipeline__SWIG_1(int jarg1, long jarg2, long jarg3);
DataStreamPipeline_finish(long jarg1, DataStreamPipeline jarg1_)294   public final static native void DataStreamPipeline_finish(long jarg1, DataStreamPipeline jarg1_);
DataStreamPipeline_direction_set(long jarg1, DataStreamPipeline jarg1_, int jarg2)295   public final static native void DataStreamPipeline_direction_set(long jarg1, DataStreamPipeline jarg1_, int jarg2);
DataStreamPipeline_direction_get(long jarg1, DataStreamPipeline jarg1_)296   public final static native int DataStreamPipeline_direction_get(long jarg1, DataStreamPipeline jarg1_);
DataStreamPipeline_pid_first_set(long jarg1, DataStreamPipeline jarg1_, long jarg2)297   public final static native void DataStreamPipeline_pid_first_set(long jarg1, DataStreamPipeline jarg1_, long jarg2);
DataStreamPipeline_pid_first_get(long jarg1, DataStreamPipeline jarg1_)298   public final static native long DataStreamPipeline_pid_first_get(long jarg1, DataStreamPipeline jarg1_);
DataStreamPipeline_pid_last_set(long jarg1, DataStreamPipeline jarg1_, long jarg2)299   public final static native void DataStreamPipeline_pid_last_set(long jarg1, DataStreamPipeline jarg1_, long jarg2);
DataStreamPipeline_pid_last_get(long jarg1, DataStreamPipeline jarg1_)300   public final static native long DataStreamPipeline_pid_last_get(long jarg1, DataStreamPipeline jarg1_);
DataStreamPipeline_closed_set(long jarg1, DataStreamPipeline jarg1_, boolean jarg2)301   public final static native void DataStreamPipeline_closed_set(long jarg1, DataStreamPipeline jarg1_, boolean jarg2);
DataStreamPipeline_closed_get(long jarg1, DataStreamPipeline jarg1_)302   public final static native boolean DataStreamPipeline_closed_get(long jarg1, DataStreamPipeline jarg1_);
delete_DataStreamPipeline(long jarg1)303   public final static native void delete_DataStreamPipeline(long jarg1);
process_spawner_init()304   public final static native boolean process_spawner_init();
PROCESS_SPAWNER_INITIALIZER_get()305   public final static native boolean PROCESS_SPAWNER_INITIALIZER_get();
get_pipeline_cmd(String jarg1, int jarg2)306   public final static native String get_pipeline_cmd(String jarg1, int jarg2);
run_pipeline_cmd(String jarg1, int jarg2, int jarg3)307   public final static native long run_pipeline_cmd(String jarg1, int jarg2, int jarg3);
PRINT_COLOR_INFO_get()308   public final static native String PRINT_COLOR_INFO_get();
PRINT_COLOR_WARNING_get()309   public final static native String PRINT_COLOR_WARNING_get();
PRINT_COLOR_ERROR_get()310   public final static native String PRINT_COLOR_ERROR_get();
PRINT_COLOR_END_get()311   public final static native String PRINT_COLOR_END_get();
get_time()312   public final static native String get_time();
log_info(String jarg1)313   public final static native void log_info(String jarg1);
log_warning(String jarg1)314   public final static native void log_warning(String jarg1);
log_error(String jarg1)315   public final static native void log_error(String jarg1);
check_info(boolean jarg1, String jarg2)316   public final static native void check_info(boolean jarg1, String jarg2);
check_warning(boolean jarg1, String jarg2)317   public final static native void check_warning(boolean jarg1, String jarg2);
check_error(boolean jarg1, String jarg2)318   public final static native void check_error(boolean jarg1, String jarg2);
check_stream(long jarg1, String jarg2)319   public final static native void check_stream(long jarg1, String jarg2);
split(String jarg1, String jarg2)320   public final static native long split(String jarg1, String jarg2);
ltrim(long jarg1)321   public final static native void ltrim(long jarg1);
rtrim(long jarg1)322   public final static native void rtrim(long jarg1);
trim(long jarg1)323   public final static native void trim(long jarg1);
starts_with(String jarg1, String jarg2)324   public final static native boolean starts_with(String jarg1, String jarg2);
ends_with(String jarg1, String jarg2)325   public final static native boolean ends_with(String jarg1, String jarg2);
DataSource_SWIGUpcast(long jarg1)326   public final static native long DataSource_SWIGUpcast(long jarg1);
DataSink_SWIGUpcast(long jarg1)327   public final static native long DataSink_SWIGUpcast(long jarg1);
328 }
329