1jobs: 2- job: linux_gcc8_32bit 3 pool: 4 vmImage: Ubuntu 16.04 5 steps: 6 - script: | 7 sudo apt-get update -qq 8 sudo apt-get install -qq software-properties-common 9 sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test 10 sudo apt-get update -qq 11 sudo apt-get install -qq autoconf automake gcc g++ libboost-dev libgtest-dev libopenmpi-dev libsparsehash-dev make pandoc 12 displayName: Install common 13 - script: sudo apt-get install -qq gcc-8 g++-8 14 displayName: Install gcc-8 15 - script: sudo apt-get install gcc-8-multilib g++-8-multilib 16 displayName: Install 32-bit compilation support 17 - script: | 18 ./autogen.sh 19 export DISTCHECK_CONFIGURE_FLAGS="CC=\"gcc-8 -m32\" CXX=\"g++-8 -m32\" --build=i386-linux-gnu" 20 ./configure CC=gcc-8 CXX=g++-8 --build=i686-linux-gnu "CFLAGS=-m32" "CXXFLAGS=-m32" "LDFLAGS=-m32" --with-mpi=/usr/lib/openmpi 21 make -j12 distcheck 22 displayName: Compiling ABySS with gcc-8 23 24- job: linux_clang6 25 pool: 26 vmImage: Ubuntu 16.04 27 steps: 28 - script: | 29 sudo apt-get update -qq 30 sudo apt-get install -qq software-properties-common 31 sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test 32 sudo apt-get update -qq 33 sudo apt-get install -qq autoconf automake gcc g++ libboost-dev libgtest-dev libopenmpi-dev libsparsehash-dev make pandoc 34 displayName: Install common 35 - script: sudo apt-get install -qq clang-6.0 36 displayName: Install clang-6.0 37 - script: | 38 ./autogen.sh 39 export DISTCHECK_CONFIGURE_FLAGS="CC=clang-6.0 CXX=clang++-6.0" 40 ./configure CC=clang-6.0 CXX=clang++-6.0 --with-mpi=/usr/lib/openmpi 41 make -j12 distcheck 42 displayName: Compiling ABySS with clang 6.0 43 44- job: linux_clang7 45 pool: 46 vmImage: Ubuntu 16.04 47 steps: 48 - script: | 49 sudo apt-get update -qq 50 sudo apt-get install -qq software-properties-common 51 sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test 52 sudo apt-get update -qq 53 sudo apt-get install -qq autoconf automake gcc g++ libboost-dev libgtest-dev libopenmpi-dev libsparsehash-dev make pandoc 54 displayName: Install common 55 - script: | 56 curl https://apt.llvm.org/llvm-snapshot.gpg.key | sudo apt-key add - 57 sudo apt-add-repository "deb http://apt.llvm.org/xenial/ llvm-toolchain-xenial-7 main" 58 sudo apt-get update 59 sudo apt-get install -qq clang-7 60 displayName: Install clang-7 61 - script: | 62 ./autogen.sh 63 export DISTCHECK_CONFIGURE_FLAGS="CC=clang-7 CXX=clang++-7" 64 ./configure CC=clang-7 CXX=clang++-7 --with-mpi=/usr/lib/openmpi 65 make -j12 distcheck 66 displayName: Compiling ABySS with clang 7 67 68- job: linux_clang8 69 pool: 70 vmImage: Ubuntu 16.04 71 steps: 72 - script: | 73 sudo apt-get update -qq 74 sudo apt-get install -qq software-properties-common 75 sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test 76 sudo apt-get update -qq 77 sudo apt-get install -qq autoconf automake gcc g++ libboost-dev libgtest-dev libopenmpi-dev libsparsehash-dev make pandoc 78 displayName: Install common 79 - script: sudo apt-get install -qq clang-8 80 displayName: Install clang-8 81 - script: | 82 ./autogen.sh 83 export DISTCHECK_CONFIGURE_FLAGS="CC=clang-8 CXX=clang++-8" 84 ./configure CC=clang-8 CXX=clang++-8 --with-mpi=/usr/lib/openmpi 85 make -j12 distcheck 86 displayName: Compiling ABySS with clang 8 87 88- job: linux_clang9 89 pool: 90 vmImage: Ubuntu 16.04 91 steps: 92 - script: | 93 sudo apt-get update -qq 94 sudo apt-get install -qq software-properties-common 95 sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test 96 sudo apt-get update -qq 97 sudo apt-get install -qq autoconf automake gcc g++ libboost-dev libgtest-dev libopenmpi-dev libsparsehash-dev make pandoc 98 displayName: Install common 99 - script: sudo apt-get install -qq clang-9 100 displayName: Install clang-9 101 - script: | 102 ./autogen.sh 103 export DISTCHECK_CONFIGURE_FLAGS="CC=clang-9 CXX=clang++-9" 104 ./configure CC=clang-9 CXX=clang++-9 --with-mpi=/usr/lib/openmpi 105 make -j12 distcheck 106 displayName: Compiling ABySS with clang 9 107 108- job: linux_clang10 109 pool: 110 vmImage: Ubuntu 18.04 111 steps: 112 - script: | 113 sudo apt-get update -qq 114 sudo apt-get install -qq software-properties-common 115 sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test 116 sudo apt-get update -qq 117 sudo apt-get install -qq autoconf automake gcc g++ libboost-dev libgtest-dev libopenmpi-dev libsparsehash-dev make pandoc 118 displayName: Install common 119 - script: sudo apt-get install -qq clang-10 120 displayName: Install clang-10 121 - script: | 122 ./autogen.sh 123 export DISTCHECK_CONFIGURE_FLAGS="CC=clang-10 CXX=clang++-10" 124 ./configure CC=clang-10 CXX=clang++-10 --with-mpi=/usr/lib/openmpi 125 make -j12 distcheck 126 displayName: Compiling ABySS with clang 10 127 128- job: linux_gcc5 129 pool: 130 vmImage: Ubuntu 16.04 131 steps: 132 - script: | 133 sudo apt-get update -qq 134 sudo apt-get install -qq software-properties-common 135 sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test 136 sudo apt-get update -qq 137 sudo apt-get install -qq autoconf automake gcc g++ libboost-dev libgtest-dev libopenmpi-dev libsparsehash-dev make pandoc 138 displayName: Install common 139 - script: sudo apt-get install -qq gcc-5 g++-5 140 displayName: Install gcc-5 141 - script: | 142 ./autogen.sh 143 export DISTCHECK_CONFIGURE_FLAGS="CC=gcc-5 CXX=g++-5" 144 ./configure CC=gcc-5 CXX=g++-5 --with-mpi=/usr/lib/openmpi 145 make -j12 distcheck 146 displayName: Compiling ABySS with gcc-5 147 148- job: linux_gcc6 149 pool: 150 vmImage: Ubuntu 16.04 151 steps: 152 - script: | 153 sudo apt-get update -qq 154 sudo apt-get install -qq software-properties-common 155 sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test 156 sudo apt-get update -qq 157 sudo apt-get install -qq autoconf automake gcc g++ libboost-dev libgtest-dev libopenmpi-dev libsparsehash-dev make pandoc 158 displayName: Install common 159 - script: sudo apt-get install -qq gcc-6 g++-6 160 displayName: Install gcc-6 161 - script: | 162 ./autogen.sh 163 export DISTCHECK_CONFIGURE_FLAGS="CC=gcc-6 CXX=g++-6" 164 ./configure CC=gcc-6 CXX=g++-6 --with-mpi=/usr/lib/openmpi 165 make -j12 distcheck 166 displayName: Compiling ABySS with gcc-6 167 168- job: linux_gcc7 169 pool: 170 vmImage: Ubuntu 16.04 171 steps: 172 - script: | 173 sudo apt-get update -qq 174 sudo apt-get install -qq software-properties-common 175 sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test 176 sudo apt-get update -qq 177 sudo apt-get install -qq autoconf automake gcc g++ libboost-dev libgtest-dev libopenmpi-dev libsparsehash-dev make pandoc 178 displayName: Install common 179 - script: sudo apt-get install -qq gcc-7 g++-7 180 displayName: Install gcc-7 181 - script: | 182 ./autogen.sh 183 export DISTCHECK_CONFIGURE_FLAGS="CC=gcc-7 CXX=g++-7" 184 ./configure CC=gcc-7 CXX=g++-7 --with-mpi=/usr/lib/openmpi 185 make -j12 distcheck 186 displayName: Compiling ABySS with gcc-7 187 188- job: linux_gcc8 189 pool: 190 vmImage: Ubuntu 16.04 191 steps: 192 - script: | 193 sudo apt-get update -qq 194 sudo apt-get install -qq software-properties-common 195 sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test 196 sudo apt-get update -qq 197 sudo apt-get install -qq autoconf automake gcc g++ libboost-dev libgtest-dev libopenmpi-dev libsparsehash-dev make pandoc 198 displayName: Install common 199 - script: sudo apt-get install -qq gcc-8 g++-8 200 displayName: Install gcc-8 201 - script: | 202 ./autogen.sh 203 export DISTCHECK_CONFIGURE_FLAGS="CC=gcc-8 CXX=g++-8" 204 ./configure CC=gcc-8 CXX=g++-8 --with-mpi=/usr/lib/openmpi 205 make -j12 distcheck 206 displayName: Compiling ABySS with gcc-8 207 208- job: clang_format 209 pool: 210 vmImage: Ubuntu 16.04 211 steps: 212 - script: | 213 sudo apt-get update -qq 214 sudo apt-get install -qq software-properties-common 215 sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test 216 sudo apt-get update -qq 217 sudo apt-get install -qq autoconf automake gcc g++ libboost-dev libgtest-dev libopenmpi-dev libsparsehash-dev make pandoc 218 displayName: Install common 219 - script: | 220 ./autogen.sh 221 ./configure 222 displayName: Configuring 223 - script: | 224 curl https://apt.llvm.org/llvm-snapshot.gpg.key | sudo apt-key add - 225 sudo apt-add-repository "deb http://apt.llvm.org/xenial/ llvm-toolchain-xenial-8 main" 226 sudo apt-get update 227 sudo apt-get install -y --no-install-recommends clang-format-8 228 sudo ln -sf clang-format-8 /usr/bin/clang-format 229 displayName: Install clang-format 230 - script: make clang-format 231 displayName: Run clang-format 232 233- job: macOS_default_gcc 234 pool: 235 vmImage: macOS-10.14 236 steps: 237 - script: | 238 brew update 239 brew install automake boost openmpi google-sparsehash make pandoc ghc 240 displayName: Install common 241 - script: | 242 ./autogen.sh 243 ./configure --with-boost=/usr/local/opt/boost/include --with-mpi=/usr/local/Cellar/open-mpi/4.0.1_2 CPPFLAGS=-I/usr/local/Cellar/google-sparsehash/2.0.3/include 244 make -j12 distcheck 245 displayName: Compiling ABySS with default gcc 246 247- job: macOS_default_clang 248 pool: 249 vmImage: macOS-10.14 250 steps: 251 - script: | 252 brew update 253 brew install automake boost openmpi google-sparsehash make pandoc ghc llvm 254 displayName: Install common 255 - script: | 256 ./autogen.sh 257 export DISTCHECK_CONFIGURE_FLAGS="CC=clang CXX=clang++" 258 ./configure CC=clang CXX=clang++ --with-boost=/usr/local/opt/boost/include --with-mpi=/usr/local/Cellar/open-mpi/4.0.1_2 CPPFLAGS=-I/usr/local/Cellar/google-sparsehash/2.0.3/include 259 make -j12 distcheck 260 displayName: Compiling ABySS with default clang 261 262- job: linux_gcc9 263 pool: 264 vmImage: Ubuntu 16.04 265 steps: 266 - script: | 267 sudo apt-get update -qq 268 sudo apt-get install -qq software-properties-common 269 sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test 270 sudo apt-get update -qq 271 sudo apt-get install -qq autoconf automake gcc g++ libboost-dev libgtest-dev libopenmpi-dev libsparsehash-dev make pandoc 272 displayName: Install common 273 - script: sudo apt-get install -qq gcc-9 g++-9 274 displayName: Install gcc-9 275 - script: | 276 ./autogen.sh 277 export DISTCHECK_CONFIGURE_FLAGS="CC=gcc-9 CXX=g++-9" 278 ./configure CC=gcc-9 CXX=g++-9 --with-mpi=/usr/lib/openmpi 279 make -j12 distcheck 280 displayName: Compiling ABySS with gcc-9 281