1@SQ SN:1 LN:247249719 2@SQ SN:2 LN:242951149 3@SQ SN:3 LN:199501827 4@SQ SN:4 LN:191273063 5@PG ID: BWA 6@PG ID: bwa 724 99 1 8 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 99 0 gggAAATTTCCCTTTGGGAAAggg 325.<.<egkl80923<>><><>, XZ:Z:forward/reverseEntireClip 810 147 1 10008 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10100 0 gggAAATTTCCCTTTGGGAAAggg 325.<.<egkl80923<>><><>, XZ:Z:forward/reverseEntireClip 920 99 1 10008 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10099 0 gggAAATTTCCCTTTGGGAAAggg 325.<.<egkl80923<>><><>, XZ:Z:forward/reverseEntireClip 1021 99 1 10008 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10099 0 gggAAATTTCCCTTTGGGAAAggg 325.<.<egkl80923<>><><>, XZ:Z:forward/reverseEntireClip 1123 99 1 10008 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10059 0 gggAAATTTCCCTTTGGGAAAggg 325.<.<egkl80923<>><><>, XZ:Z:forward/reverseEntireClip 128 147 1 10008 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10010 0 gggAAATTTCCCTTTGGGAAAggg 325.<.<egkl80923<>><><>, XZ:Z:forward/reverseClip 139 147 1 10008 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10010 0 gggAAATTTCCCTTTGGGAAAggg 325.<.<egkl80923<>><><>, XZ:Z:forward/reverseClip 147 147 1 10008 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10010 0 gggAAATTTCCCTTTGGGAAAggg 325.<.<egkl80923<>><><>, XZ:Z:forward/reverseClip 151 99 1 10010 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10010 0 gggAAATTTCCCTTTGGGAAAggg 325wregkl90923<>><><>,.< XZ:Z:CompleteOverlap 162 99 1 10010 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10011 0 gggAAATTTCCCTTTGGGAAAggg 325wregkl90923<>><><>,.< XZ:Z:Shift1 171 147 1 10010 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10010 0 gggAAATTTCCCTTTGGGAAAggg 325wregkl90923<>><><>,.< XZ:Z:CompleteOverlap 184 99 1 10010 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10011 0 gggAAATTTCCCTTTGGGAAAggg 325wregkl90923<>><><>,.< XZ:Z:Shift1 195 99 1 10010 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10010 0 gggAAATTTCCCTTTGGGAAAggg 325waegkl90923<>><><>,.< XZ:Z:CompleteOverlap,1stLowQual 209 99 1 10010 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10008 0 gggAAATTTCCCTTTGGGAAAggg <>,.<egkl90923<>><><>,-< XZ:Z:forward/reverseClip 215 147 1 10010 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10010 0 gggAAATTTCCCTTTGGGAAAggg 325wregkl90923<>><><>,.< XZ:Z:CompleteOverlap,1stLowQual 226 99 1 10010 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10010 0 gggAAATTTCCCTTTGGGAAAggg 325wregkl90923<>><><>,.< XZ:Z:CompleteOverlap,2ndLowQual 236 147 1 10010 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10010 0 gggAAATTTCCCTTTGGGAAAggg 325waegkl90923<>><><>,.< XZ:Z:CompleteOverlap,2ndLowQual 2415 99 1 10010 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10011 0 gggAAATTTCCCTTTGGGAAAggg 325wregkl90923<>><><>,.< XZ:Z:Shift1 2511 99 1 10010 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10011 0 gggAAATTTCCCTTTGGGAAAggg 325wregkl90923<>><><>,.< XZ:Z:1st Read ends after 2nd 267 99 1 10010 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10008 0 gggAAATTTCCCTTTGGGAAAggg <>,.<egkl90923<>><><>,-< XZ:Z:forward/reverseClip 271 147 1 10010 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10010 0 gggAAATTTCCCTTTGGGAAAggg 325wregkl90923<>><><>,.< XZ:Z:CompleteOverlap No Change, no match 283 99 1 10010 0 3H3S3M3D3M3I3M3P3M3D3M3S3H 2 10011 0 gggAAATTTCCCTTTGGGAAAggg 325wregkl90923<>><><>,.< XZ:Z:DifferChrom 297 147 1 10010 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10008 0 gggAAATTTCCCTTTGGGAAAggg 325.<egkl90923<>><><>,-< XZ:Z:forward/reverseClip 308 99 1 10010 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10008 0 gggAAATTTCCCTTTGGGAAAggg <>,.<egkl90723<>><><>,-< XZ:Z:forward/reverseClip 3115 147 1 10011 0 3H3S2M3D3M3I3M3P3M3D4M3S3H = 10010 0 gggAATTTCCCTTTGGGAAAGggg 325wregk020923<>><><>,.< XZ:Z:Shift1 322 147 1 10011 0 3H3S2M3D3M3I3M3P3M3D4M3S3H = 10010 0 gggAATTTCCCTTTGGGAAAGggg 325wregkl90923<>><><>,.< XZ:Z:Shift1 3311 147 1 10011 0 3H3S3M18S = 10010 0 gggAATTTCCCTTTGGGAAAGggg 325wregkl90923<>><><>,.< XZ:Z:1st Read ends after 2nd 344 147 1 10011 0 3H3S2M3D3M3I3M3P3M3D4M3S3H = 10010 0 gggAATTTCCCTTTGGGAAAGggg 325wregkl90923<>><><>,.< XZ:Z:Shift1 3523 147 1 10059 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10008 0 gggAAATTTCCCTTTGGGAAAggg <>,.<egkl90923<>><><>,-< XZ:Z:forward/reverseEntireClip 3624 147 1 10099 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10008 0 gggAAATTTCCCTTTGGGAAAggg <>,.<egkl90923<>><><>,-< XZ:Z:forward/reverseEntireClip 3720 147 1 10099 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10008 0 gggAAATTTCCCTTTGGGAAAggg <>,.<egkl90923<>><><>,-< XZ:Z:forward/reverseEntireClip 3821 147 1 10099 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10008 0 gggAAATTTCCCTTTGGGAAAggg <>,.<egkl90923<>><><>,-< XZ:Z:forward/reverseEntireClip 3910 99 1 10100 0 3H3S3M3D3M3I3M3P3M3D3M3S3H = 10008 0 gggAAATTTCCCTTTGGGAAAggg <>,.<egkl90923<>><><>,-< XZ:Z:forward/reverseEntireClip 403 147 2 11 0 3H3S2M3D3M3I3M3P3M3D4M3S3H 1 10 0 gggAATTTCCCTTTGGGAAAGggg 325wregkl90923<>><><>,.< XZ:Z:DifferChrom 4112 147 2 12 0 3H3S2M3D3M3I3M3P3M3D4M3S3H = 15 0 gggAATTTCCCTTTGGGAAAGggg 325wregkl90923<>><><>,.< XZ:Z:DifferChrom 4216 99 4 1 0 24M = 2 0 gggAATTTCCCTTTGGGAAAGggg 325wregkl90923<>><><>,.1 XZ:Z:clipOverlapAllMatch 4316 147 4 2 0 24M = 1 0 gggAATTTCCCTTTGGGAAAGggg 25wregkl90923<>><><>,.00 XZ:Z:clipOverlapAllMatch 4417 99 4 4 0 24M = 5 0 gggAATTTCCCTTTGGGAAAGggg 325wregkl90923<>><><>,.1 XZ:Z:clipOverlapAllMatch 4517 147 4 5 0 24M = 4 0 gggAATTTCCCTTTGGGAAAGggg 25wregkl90923<>><><>,.00 XZ:Z:clipOverlapAllMatch 4618 99 4 7 0 24M = 8 0 gggAATTTCCCTTTGGGAAAGggg 325wregkl90923<>><><>,.1 XZ:Z:clipOverlapAllMatch 4718 147 4 8 0 24M = 7 0 gggAATTTCCCTTTGGGAAAGggg 25wregkl90923<>><><>,.00 XZ:Z:clipOverlapAllMatch 4813 99 4 11 0 24M = 30 0 gggAATTTCCCTTTGGGAAAGggg 325wregkl90923<>><><>,.< XZ:Z:clipOverlapAllMatch 4913 147 4 30 0 24M = 11 0 gggAATTTCCCTTTGGGAAAGggg 325wregkl90923<>><><>,.< XZ:Z:clipOverlapAllMatch 5014 99 * 0 0 24M * 0 0 gggAATTTCCCTTTGGGAAAGggg 325wregkl90923<>><><>,.< XZ:Z:*chrom/Pos 5114 147 * 0 0 24M 5 13 0 gggAATTTCCCTTTGGGAAAGggg 325wregkl90923<>><><>,.< XZ:Z:*chrom/Pos 52