1 /* DO NOT EDIT THIS FILE - it is machine generated */ 2 #include <jni.h> 3 /* Header for class align2_BandedAlignerJNI */ 4 5 #ifndef _Included_align2_BandedAlignerJNI 6 #define _Included_align2_BandedAlignerJNI 7 #ifdef __cplusplus 8 extern "C" { 9 #endif 10 #undef align2_BandedAlignerJNI_big 11 #define align2_BandedAlignerJNI_big 99999999L 12 /* 13 * Class: align2_BandedAlignerJNI 14 * Method: alignForwardJNI 15 * Signature: ([B[BIIIZI[B[I)I 16 */ 17 JNIEXPORT jint JNICALL Java_align2_BandedAlignerJNI_alignForwardJNI 18 (JNIEnv *, jobject, jbyteArray, jbyteArray, jint, jint, jint, jboolean, jint, jbyteArray, jintArray); 19 20 /* 21 * Class: align2_BandedAlignerJNI 22 * Method: alignForwardRCJNI 23 * Signature: ([B[BIIIZI[B[B[I)I 24 */ 25 JNIEXPORT jint JNICALL Java_align2_BandedAlignerJNI_alignForwardRCJNI 26 (JNIEnv *, jobject, jbyteArray, jbyteArray, jint, jint, jint, jboolean, jint, jbyteArray, jbyteArray, jintArray); 27 28 /* 29 * Class: align2_BandedAlignerJNI 30 * Method: alignReverseJNI 31 * Signature: ([B[BIIIZI[B[I)I 32 */ 33 JNIEXPORT jint JNICALL Java_align2_BandedAlignerJNI_alignReverseJNI 34 (JNIEnv *, jobject, jbyteArray, jbyteArray, jint, jint, jint, jboolean, jint, jbyteArray, jintArray); 35 36 /* 37 * Class: align2_BandedAlignerJNI 38 * Method: alignReverseRCJNI 39 * Signature: ([B[BIIIZI[B[B[I)I 40 */ 41 JNIEXPORT jint JNICALL Java_align2_BandedAlignerJNI_alignReverseRCJNI 42 (JNIEnv *, jobject, jbyteArray, jbyteArray, jint, jint, jint, jboolean, jint, jbyteArray, jbyteArray, jintArray); 43 44 #ifdef __cplusplus 45 } 46 #endif 47 #endif 48