1##fileformat=VCFv4.3
2##FILTER=<ID=PASS,Description="All filters passed">
3##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
4##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Genotype Likelihoods">
5##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihoods">
6##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic Depths">
7##FORMAT=<ID=DF,Number=R,Type=Float,Description="Dummy">
8##FORMAT=<ID=DD,Number=A,Type=Integer,Description="Dummy">
9##contig=<ID=1,assembly=b37,length=249250621>
10##reference=ref.fa
11##FORMAT=<ID=LAA,Number=.,Type=Integer,Description="Localized alleles: subset of alternate alleles relevant for each sample">
12##FORMAT=<ID=LPL,Number=.,Type=Integer,Description="Localized field: Genotype Likelihoods">
13##FORMAT=<ID=LGL,Number=.,Type=Float,Description="Localized field: Genotype Likelihoods">
14##FORMAT=<ID=LAD,Number=.,Type=Integer,Description="Localized field: Allelic Depths">
15##FORMAT=<ID=LDF,Number=.,Type=Float,Description="Localized field: Dummy">
16##FORMAT=<ID=LDD,Number=.,Type=Integer,Description="Localized field: Dummy">
17#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	A	2:A	3:A
181	30000	.	C	T	.	.	.	GT:PL:GL:AD:DF:DD	0/1:20,0,20:20,0,20:1,2:0.1,0.2:1	0/1:20,0,20:20,0,20:1,2:0.1,0.2:1	0/1:20,0,20:20,0,20:1,2:0.1,0.2:1
191	30001	.	C	CA,CC,CG	.	.	.	GT:PL:GL:AD:DF:DD	0/1:10,0,10,.,.,.,.,.,.,.:10,0,10,.,.,.,.,.,.,.:1,2,.,.:0.1,0.2,.,.:1,.,.	0/2:10,.,.,0,.,10,.,.,.,.:10,.,.,0,.,10,.,.,.,.:1,.,2,.:0.1,.,0.2,.:.,1,.	0/3:10,.,.,.,.,.,0,.,.,10:10,.,.,.,.,.,0,.,.,10:1,.,.,2:0.1,.,.,0.2:.,.,1
201	30002	.	C	CA,CAA,CC,CCC,CG,CGG	.	.	.	GT:LPL:LGL:LAD:LDF:LDD:LAA	1/2:20,20,20,10,0,10:20,20,20,10,0,10:0,1,2:0,0.1,0.2:1,2:1,2	3/4:20,20,20,10,0,10:20,20,20,10,0,10:0,1,2:0,0.1,0.2:1,2:3,4	5/6:20,20,20,10,0,10:20,20,20,10,0,10:0,1,2:0,0.1,0.2:1,2:5,6
211	30003	.	C	CA,CAA,CAAA	.	.	.	GT:PL:GL:AD:DF:DD	1/2:20,20,20,10,0,10,20,20,10,20:20,20,20,10,0,10,20,20,10,20:0,1,2,1:0,0.1,0.2,0.1:1,2,3	./.:.:.:.:.:.	./.:.:.:.:.:.
221	30004	.	C	CC,CCC,CCCC	.	.	.	GT:PL:GL:AD:DF:DD	./.:.:.:.:.:.	1/2:20,20,20,10,0,10,20,20,10,20:20,20,20,10,0,10,20,20,10,20:0,1,2,1:0,0.1,0.2,0.1:1,2,3	./.:.:.:.:.:.
231	30005	.	C	CG,CGG,CGGG	.	.	.	GT:PL:GL:AD:DF:DD	./.:.:.:.:.:.	./.:.:.:.:.:.	1/2:20,20,20,10,0,10,20,20,10,20:20,20,20,10,0,10,20,20,10,20:0,1,2,1:0,0.1,0.2,0.1:1,2,3
24