BIOLIBC - Library of high-performance low-level functions for bioinformatics programming

 
#include <biolibc/bed.h>
#include <biolibc/biolibc.h>
#include <biolibc/biostring.h>
#include <biolibc/gff.h>
#include <biolibc/overlap.h>
#include <biolibc/pos-list.h>
#include <biolibc/sam.h>
#include <biolibc/sam-buff.h>
#include <biolibc/vcf.h>

cc program.c -lbiolibc -lxtend

Biolibc is a library of fast, memory-efficient, low-level functions for processing biological data. Like libc, it consists of numerous disparate, general-purpose functions which could be used by a wide variety of applications. These include functions for streaming common file formats such as SAM and VCF, string functions specific to bioinformatics, etc. Documentation on individual functions should be available soon. vcf-split, ad2vcf, vcf2hap, peak-classifier Please report bugs to the author and send patches in unified diff format. (man diff for more information)

J. Bacon