1# Some useful automake documentation: 2# http://www.openismus.com/documents/linux/automake/automake.shtml 3# http://www.bioinf.uni-freiburg.de/~mmann/HowTo/automake.html 4 5#SUBDIRS = 6#EXTRA_DIST = 7# LDADD = foofiles/libfoo.a 8 9AM_CXXFLAGS = -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 @OPENMP_CXXFLAGS@ @AM_CXXFLAGS@ 10 11noinst_LTLIBRARIES = libhhalign.la 12 13libhhalign_la_SOURCES = hhalign.cpp hhalign.h \ 14 hash-C.h hash.h hhdecl-C.h hhfunc-C.h hhfunc.h \ 15 hhmatrices-C.h hhutil-C.h \ 16 hhalignment-C.h hhalignment.h \ 17 hhfullalignment-C.h hhfullalignment.h \ 18 hhhalfalignment-C.h hhhalfalignment.h \ 19 hhhit-C.h hhhit.h hhhitlist-C.h hhhitlist.h \ 20 hhhmm-C.h hhhmm.h \ 21 util-C.h list-C.h list.h \ 22 general.h 23 24library_includedir=$(includedir)/clustalo/hhalign 25 26library_include_HEADERS = general.h hhfunc.h 27