1# -*- Autoconf -*- 2# Configure template for the EMBOSS package. 3# Process this file with autoconf to produce a configure script. 4 5AC_PREREQ([2.64]) 6AC_INIT([EMBOSS], 7[6.6.0], 8[emboss-bug@emboss.open-bio.org], 9[EMBOSS], 10[http://emboss.open-bio.org/]) 11AC_REVISION([$Revision: 1.162 $]) 12AC_CONFIG_SRCDIR([ajax/acd/ajacd.c]) 13AC_CONFIG_HEADERS([ajax/core/config.h]) 14AC_CONFIG_MACRO_DIR([m4]) 15 16# Make sure CFLAGS is defined to stop AC_PROG_CC adding -g. 17CFLAGS="${CFLAGS} " 18 19# Checks for programs. 20AC_PROG_AWK 21AC_PROG_CC([icc gcc cc]) 22AC_PROG_CXX([icpc g++]) 23AC_PROG_CPP 24AC_PROG_INSTALL 25AC_PROG_LN_S 26AC_PROG_MAKE_SET 27AC_PROG_MKDIR_P 28 29AM_INIT_AUTOMAKE 30 31# Use libtool to make a shared library. 32LT_INIT 33 34 35 36 37# Check if 64 bit pointer support is required on 32 bit machines 38# Disabled by default 39 40AC_ARG_ENABLE([64], 41[AS_HELP_STRING([--enable-64], [64 bit pointers on 32 bit machines])]) 42 43AS_IF([test "x${enable_64}" = "xyes"], 44[ 45 AC_MSG_CHECKING([for 64bit compilation support]) 46 47 AS_CASE([${host_os}], 48 [aix*], 49 [ 50 CPPFLAGS="-DAJ_AIX64 ${CPPFLAGS}" 51 AS_CASE([${CC}], 52 [gcc], 53 [], 54 [ 55 AS_VAR_APPEND([CC], [" -q64"]) 56 ]) 57 NM="nm -B -X 64" 58 AR="ar -X 64" 59 ], 60 [hpux*], 61 [ 62 AS_CASE([${CC}], 63 [gcc], 64 [], 65 [ 66 AS_VAR_APPEND([CC], [" +DD64"]) 67 ]) 68 AC_DEFINE([HPUX64PTRS], [1], [Set to 1 if HPUX 64bit ptrs on 32 bit m/c]) 69 ]) 70 AC_MSG_RESULT([done]) 71]) 72 73 74 75 76# Compiler optimisations 77# The Solaris 64bit ptr check has to be done here owing to param order 78 79AC_ARG_WITH([optimisation], 80[AS_HELP_STRING([--without-optimisation], [Disable compiler optimisation])]) 81 82AS_IF([test "x${with_optimisation}" != "xno"], 83[ 84 AS_CASE([${CC}], 85 [gcc], 86 [ 87 # Intel MacOSX requires reduced optimisation for PCRE code 88 # other OSs just use -O2 89 AS_CASE([${host_os}], 90 [darwin*], 91 [ 92 AS_IF([test "x${host_cpu}" = "xi386"], 93 [AS_VAR_APPEND([CFLAGS], [" -O1"])], 94 [AS_VAR_APPEND([CFLAGS], [" -O2"])]) 95 ], 96 [ 97 AS_VAR_APPEND([CFLAGS], [" -O2"]) 98 ]) 99 ], 100 [ 101 AS_CASE([${host_os}], 102 [aix*], 103 [ 104 AS_VAR_APPEND([CFLAGS], [" -O3 -qstrict -qarch=auto -qtune=auto"]) 105 ], 106 [irix*], 107 [ 108 LD="/usr/bin/ld -IPA" 109 AS_VAR_APPEND([CFLAGS], [" -O3"]) 110 ], 111 [hpux*], 112 [ 113 AS_VAR_APPEND([CFLAGS], [" -fast"]) 114 ], 115 [osf*], 116 [ 117 AS_VAR_APPEND([CFLAGS], [" -fast -U_FASTMATH"]) 118 ], 119 [solaris*], 120 [ 121 AS_VAR_APPEND([CFLAGS], [" -O"]) 122 # test for 64 bit ptr here (see Solaris 64bit above) 123 AS_IF([test "x${enable_64}" = "xyes"], 124 [AS_VAR_APPEND([CFLAGS], [" -xtarget=ultra -xarch=v9"])]) 125 ], 126 [linux*], 127 [ 128 # Default optimisation for non-gcc compilers under Linux 129 AS_VAR_APPEND([CFLAGS], [" -O2"]) 130 ], 131 [freebsd*], 132 [ 133 AS_VAR_APPEND([CFLAGS], [" -O2"]) 134 ]) 135 ]) 136]) 137 138 139 140 141# Compiler warning settings: --enable-warnings, defines WARN_CFLAGS 142 143AC_ARG_ENABLE([warnings], 144[AS_HELP_STRING([--enable-warnings], [compiler warnings])]) 145 146AS_IF([test "x${enable_warnings}" = "xyes"], 147[ 148 AS_CASE([${CC}], 149 [gcc], 150 [ 151 # -Wall priovides: 152 # -Waddress 153 # -Warray-bounds (only with -O2) 154 # -Wc++0x-compat 155 # -Wchar-subscripts 156 # -Wenum-compare (in C/Objc; this is on by default in C++) 157 # -Wimplicit-int (C and Objective-C only) 158 # -Wimplicit-function-declaration (C and Objective-C only) 159 # -Wcomment 160 # -Wformat 161 # -Wmain (only for C/ObjC and unless -ffreestanding) 162 # -Wmissing-braces 163 # -Wnonnull 164 # -Wparentheses 165 # -Wpointer-sign 166 # -Wreorder 167 # -Wreturn-type 168 # -Wsequence-point 169 # -Wsign-compare (only in C++) 170 # -Wstrict-aliasing 171 # -Wstrict-overflow=1 172 # -Wswitch 173 # -Wtrigraphs 174 # -Wuninitialized 175 # -Wunknown-pragmas 176 # -Wunused-function 177 # -Wunused-label 178 # -Wunused-value 179 # -Wunused-variable 180 # -Wvolatile-register-var 181 182 AS_VAR_SET([WARN_CFLAGS], ["-Wall -fno-strict-aliasing"]) 183 ]) 184]) 185 186AC_SUBST([WARN_CFLAGS]) 187 188 189 190 191# Compiler developer warning settings: --enable-devwarnings, 192# sets DEVWARN_CFLAGS 193 194AC_ARG_ENABLE([devwarnings], 195[AS_HELP_STRING([--enable-devwarnings], 196[strict compiler warnings for developers])]) 197 198AS_IF([test "x${enable_devwarnings}" = "xyes"], 199[ 200 AS_CASE([${CC}], 201 [gcc], 202 [ 203 # Diagnostic options for the GNU GCC compiler version 4.6.1. 204 # http://gcc.gnu.org/onlinedocs/gcc-4.6.1/gcc/Warning-Options.html 205 # 206 # -Wextra: more warnings beyond what -Wall provides 207 # -Wclobbered 208 # -Wempty-body 209 # -Wignored-qualifiers 210 # -Wmissing-field-initializers 211 # -Wmissing-parameter-type (C only) 212 # -Wold-style-declaration (C only) 213 # -Woverride-init 214 # -Wsign-compare 215 # -Wtype-limits 216 # -Wuninitialized 217 # -Wunused-parameter (only with -Wunused or -Wall) 218 # -Wunused-but-set-parameter (only with -Wunused or -Wall) 219 220 AS_VAR_SET([DEVWARN_CFLAGS], ["-Wextra"]) 221 222 # Warn if a function is declared or defined without specifying the 223 # argument types. 224 225 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wstrict-prototypes"]) 226 227 # Warn if a global function is defined without a previous prototype 228 # declaration. 229 230 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wmissing-prototypes"]) 231 232 # Warn for obsolescent usages, according to the C Standard, 233 # in a declaration. 234 235 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wold-style-definition"]) 236 237 # Warn if a global function is defined without a previous declaration. 238 239 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wmissing-declarations"]) 240 241 # When compiling C, give string constants the type const char[length] 242 # so that copying the address of one into a non-const char * pointer 243 # will get a warning. 244 245 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wwrite-strings"]) 246 247 # Warn whenever a local variable or type declaration shadows another 248 # variable, parameter, type, or class member (in C++), or whenever a 249 # built-in function is shadowed. 250 251 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wshadow"]) 252 253 # Warn when a declaration is found after a statement in a block. 254 255 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wdeclaration-after-statement"]) 256 257 # Warn if an undefined identifier is evaluated in an `#if' directive. 258 259 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wundef"]) 260 261 # Warn about anything that depends on the "size of" a function type 262 # or of void. 263 264 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wpointer-arith"]) 265 266 # Warn whenever a pointer is cast so as to remove a type qualifier 267 # from the target type. 268 269 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wcast-qual"]) 270 271 # Warn whenever a pointer is cast such that the required alignment 272 # of the target is increased. 273 274 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wcast-align"]) 275 276 # Warn whenever a function call is cast to a non-matching type. 277 278 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wbad-function-cast"]) 279 280 # Warn when a comparison between signed and unsigned values could 281 # produce an incorrect result when the signed value is converted to 282 # unsigned. 283 284 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wsign-compare"]) 285 286 # Warn if a structure's initializer has some fields missing. 287 288 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wmissing-field-initializers"]) 289 290 # An alias of the new option -Wsuggest-attribute=noreturn 291 # Warn for cases where adding an attribute may be beneficial. 292 293 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wmissing-noreturn"]) 294 295 # Warn if an extern declaration is encountered within a function. 296 297 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wnested-externs"]) 298 299 # Warn if anything is declared more than once in the same scope, 300 # even in cases where multiple declaration is valid and changes 301 # nothing. 302 303 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wredundant-decls"]) 304 305 # Warn if the loop cannot be optimized because the compiler could not 306 # assume anything on the bounds of the loop indices. 307 # -Wunsafe-loop-optimizations objects to loops with increments more 308 # than 1 because if the end is at INT_MAX it could run forever ... 309 # rarely 310 311 # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wunsafe-loop-optimizations"]) 312 313 # Warn for implicit conversions that may alter a value. 314 # -Wconversion is brain-damaged - complains about char arguments 315 # every time 316 317 # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wconversion"]) 318 319 # Warn about certain constructs that behave differently in traditional 320 # and ISO C. 321 # -Wtraditional gives #elif and #error msgs 322 323 # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wtraditional"]) 324 325 # Warn if floating point values are used in equality comparisons. 326 # -Wfloat-equal will not allow tests for values still 0.0 327 328 # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wfloat-equal"]) 329 330 # This option is only active when -ftree-vrp is active 331 # (default for -O2 and above). It warns about subscripts to arrays 332 # that are always out of bounds. 333 # -Warray-bounds gives false positives in gcc 4.6.0 334 # Disable rather than use a non-portable pragma 335 336 # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wno-array-bounds"]) 337 ], 338 [icc], 339 [ 340 # Diagnostic options for the Intel(R) C++ compiler version 11.1. 341 # http://software.intel.com/en-us/articles/intel-c-compiler-professional-edition-for-linux-documentation/ 342 343 # This option specifies the level of diagnostic messages to be 344 # generated by the compiler. 345 346 AS_VAR_SET([DEVWARN_CFLAGS], ["-w2"]) 347 348 # This option determines whether a warning is issued if generated 349 # code is not C++ ABI compliant. 350 351 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wabi"]) 352 353 # This option tells the compiler to display errors, warnings, and 354 # remarks. 355 356 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wall"]) 357 358 # This option tells the compiler to display a shorter form of 359 # diagnostic output. 360 361 # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wbrief"]) 362 363 # This option warns if cast is used to override pointer type 364 # qualifier 365 366 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wcast-qual"]) 367 368 # This option tells the compiler to perform compile-time code 369 # checking for certain code. 370 371 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wcheck"]) 372 373 # This option determines whether a warning is issued when /* 374 # appears in the middle of a /* */ comment. 375 376 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wcomment"]) 377 378 # Set maximum number of template instantiation contexts shown in 379 # diagnostic. 380 381 # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wcontext-limit=n"]) 382 383 # This option enables warnings for implicit conversions that may 384 # alter a value. 385 386 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wconversion"]) 387 388 # This option determines whether warnings are issued for deprecated 389 # features. 390 391 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wdeprecated"]) 392 393 # This option enables warnings based on certain C++ programming 394 # guidelines. 395 396 # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Weffc++"]) 397 398 # This option changes all warnings to errors. 399 # Alternate: -diag-error warn 400 401 # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Werror"]) 402 403 # This option changes all warnings and remarks to errors. 404 # Alternate: -diag-error warn, remark 405 406 # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Werror-all"]) 407 408 # This option determines whether warnings are issued about extra 409 # tokens at the end of preprocessor directives. 410 411 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wextra-tokens"]) 412 413 # This option determines whether argument checking is enabled for 414 # calls to printf, scanf, and so forth. 415 416 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wformat"]) 417 418 # This option determines whether the compiler issues a warning when 419 # the use of format functions may cause security problems. 420 421 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wformat-security"]) 422 423 # This option enables diagnostics about what is inlined and what is 424 # not inlined. 425 426 # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Winline"]) 427 428 # This option determines whether a warning is issued if the return 429 # type of main is not expected. 430 431 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wmain"]) 432 433 # This option determines whether warnings are issued for global 434 # functions and variables without prior declaration. 435 436 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wmissing-declarations"]) 437 438 # Determines whether warnings are issued for missing prototypes. 439 440 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wmissing-prototypes"]) 441 442 # This option enables warnings if a multicharacter constant 443 # ('ABC') is used. 444 445 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wmultichar"]) 446 447 # Issue a warning when a class appears to be polymorphic, 448 # yet it declares a non-virtual one. 449 # This option is supported in C++ only. 450 451 # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wnon-virtual-dtor"]) 452 453 # This option warns about operations that could result in 454 # integer overflow. 455 456 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Woverflow"]) 457 458 # This option tells the compiler to display diagnostics for 64-bit 459 # porting. 460 461 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wp64"]) 462 463 # Determines whether warnings are issued for questionable pointer 464 # arithmetic. 465 466 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wpointer-arith"]) 467 468 # his option determines whether a warning is issued about the 469 # use of #pragma once. 470 471 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wpragma-once"]) 472 473 # Issue a warning when the order of member initializers does not 474 # match the order in which they must be executed. 475 # This option is supported with C++ only. 476 477 # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wreorder"]) 478 479 # This option determines whether warnings are issued when a function 480 # uses the default int return type or when a return statement is 481 # used in a void function. 482 483 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wreturn-type"]) 484 485 # This option determines whether a warning is issued when a variable 486 # declaration hides a previous declaration. 487 488 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wshadow"]) 489 490 # This option warns for code that might violate the optimizer's 491 # strict aliasing rules. Warnings are issued only when using 492 # -fstrict-aliasing or -ansi-alias. 493 494 # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wstrict-aliasing"]) 495 496 # This option determines whether warnings are issued for functions 497 # declared or defined without specified argument types. 498 499 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wstrict-prototypes"]) 500 501 # This option determines whether warnings are issued if any trigraphs 502 # are encountered that might change the meaning of the program. 503 504 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wtrigraphs"]) 505 506 # This option determines whether a warning is issued if a variable 507 # is used before being initialized. 508 509 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wuninitialized"]) 510 511 # This option determines whether a warning is issued if an unknown 512 # #pragma directive is used. 513 514 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wunknown-pragmas"]) 515 516 # This option determines whether a warning is issued if a declared 517 # function is not used. 518 519 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wunused-function"]) 520 521 # This option determines whether a warning is issued if a local or 522 # non-constant static variable is unused after being declared. 523 524 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wunused-variable"]) 525 526 # This option issues a diagnostic message if const char* is 527 # converted to (non-const) char *. 528 529 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wwrite-strings"]) 530 531 # Disable warning #981 operands are evaluated in unspecified order 532 # http://software.intel.com/en-us/articles/cdiag981/ 533 534 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -diag-disable 981"]) 535 ]) 536]) 537 538AC_SUBST([DEVWARN_CFLAGS]) 539 540 541 542 543# Compiler extra developer warning settings: --enable-devextrawarnings, 544# appends DEVWARN_CFLAGS 545# Will only have an effect if --enable-devwarnings also given 546 547AC_ARG_ENABLE([devextrawarnings], 548[AS_HELP_STRING([--enable-devextrawarnings], 549[add extra warnings to devwarnings])]) 550 551AS_IF([test "x${enable_devwarnings}" = "xyes" && 552 test "x${enable_devextrawarnings}" = "xyes"], 553[ 554 AS_CASE([${CC}], 555 [gcc], 556 [ 557 # flags used by Ubuntu 8.10 to check open has 2/3 arguments etc. 558 559 AC_DEFINE([_FORTIFY_SOURCE], [2], [Set to 2 for open args]) 560 561 # compiler flags 562 563 CPPFLAGS="-fstack-protector ${CPPFLAGS}" 564 565 # warnings used by Ubuntu 8.10 566 # -Wall already includes: 567 # -Wformat 568 569 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wformat-security -Wl,-z,relro"]) 570 571 # -Wpadded means moving char to end of structs - but also flags 572 # end of struct so need to add padding at end 573 574 AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wpadded"]) 575 ]) 576]) 577 578 579 580 581# Compile deprecated functions still used in the book text for 6.2.0 582 583AC_ARG_ENABLE([buildbookdeprecated], 584[AS_HELP_STRING([--enable-buildbookdeprecated], 585[build deprecated functions used in books for 6.2.0])]) 586 587# Compile all deprecated functions 588 589AC_ARG_ENABLE([buildalldeprecated], 590[AS_HELP_STRING([--enable-buildalldeprecated], 591[build all deprecated functions])]) 592 593AS_IF([test "x${enable_buildbookdeprecated}" = "xyes" || 594 test "x${enable_buildalldeprecated}" = "xyes"], 595[ 596 AC_DEFINE([AJ_COMPILE_DEPRECATED_BOOK], [1], 597 [Define to 1 to compile deprecated functions used in book texts for 6.2.0]) 598]) 599 600AS_IF([test "x${enable_buildalldeprecated}" = "xyes"], 601[ 602 AC_DEFINE([AJ_COMPILE_DEPRECATED], [1], 603 [Define to 1 to compile all deprecated functions]) 604]) 605 606 607 608 609# Add extensions to Solaris for some reentrant functions 610 611AS_CASE([${host_os}], 612[solaris*], 613[AS_VAR_APPEND([CFLAGS], [" -D__EXTENSIONS__"])]) 614 615 616 617 618# Test whether --with-sgiabi given for IRIX (n32m3 n32m4 64m3 64m4) 619 620AS_CASE([${host_os}], 621[irix*], 622[ 623 AS_CASE([${CC}], 624 [gcc], 625 [], 626 [cc], 627 [CHECK_SGI]) 628]) 629 630 631 632 633dnl PCRE library definitions - see the MAJOR and MINOR values 634dnl to see which version's configure.in these lines come from 635 636dnl Provide the current PCRE version information. Do not use numbers 637dnl with leading zeros for the minor version, as they end up in a C 638dnl macro, and may be treated as octal constants. Stick to single 639dnl digits for minor numbers less than 10. There are unlikely to be 640dnl that many releases anyway. 641 642PCRE_MAJOR="7" 643PCRE_MINOR="9" 644PCRE_DATE="11-Apr-2009" 645PCRE_VERSION="${PCRE_MAJOR}.${PCRE_MINOR}" 646 647dnl Default values for miscellaneous macros 648 649POSIX_MALLOC_THRESHOLD="-DPOSIX_MALLOC_THRESHOLD=10" 650 651dnl Provide versioning information for libtool shared libraries that 652dnl are built by default on Unix systems. 653 654PCRE_LIB_VERSION="0:1:0" 655PCRE_POSIXLIB_VERSION="0:0:0" 656 657 658dnl Define where the EMBOSS package is located 659AC_SUBST([AJAX_FIXED_ROOT]) 660AJAX_FIXED_ROOT="\\\"`pwd`/emboss\\\"" 661AC_SUBST([EMBOSS_TOP]) 662EMBOSS_TOP=`pwd` 663AC_SUBST([AJAX_SYSTEM]) 664AJAX_SYSTEM="\\\"`uname`\\\"" 665 666 667 668 669dnl FIXME: This does no longer seem required with Autoconf 2.67? 670dnl Intel MacOSX 10.6 puts X11 in a non-standard place 671dnl AS_IF([test "x${with_x}" != "xno"], 672dnl [ 673dnl AS_CASE([${host_os}], 674dnl [darwin*], 675dnl [ 676dnl OSXX=`sw_vers -productVersion | sed 's/\(10\.[[0-9]]*\).*/\1/'` 677dnl AS_IF([test ${OSXX} '>' '10.4'], 678dnl [AS_VAR_APPEND([CFLAGS], [" -I/usr/X11/include -L/usr/X11/lib"])]) 679dnl ]) 680dnl ]) 681 682 683 684 685# Checks for header files. 686AC_PATH_XTRA 687AC_HEADER_DIRENT 688AC_HEADER_STDC 689 690AC_CHECK_HEADERS([unistd.h TargetConfig.h]) 691 692 693# Checks for typedefs, structures, and compiler characteristics. 694AC_C_BIGENDIAN 695AC_C_CONST 696AC_C_INLINE 697AC_TYPE_PID_T 698AC_TYPE_SIZE_T 699AC_STRUCT_TM 700 701 702# Checks for library functions. 703AC_FUNC_GETPGRP 704AC_FUNC_STRFTIME 705AC_FUNC_FORK 706AC_FUNC_VPRINTF 707 708AC_CHECK_FUNCS([memmove]) 709 710AS_IF([test "x${with_x}" != "xno"], [LF_EMBOSS_PATH_XLIB]) 711 712 713# Library checks. 714AC_CHECK_LIB([c], [socket], [LIBS="${LIBS}"], [LIBS="${LIBS} -lsocket"]) 715AC_CHECK_LIB([m], [main]) 716 717 718# GD for FreeBSD requires libiconv 719 720AS_CASE([${host_os}], 721[freebsd*], 722[ 723 AS_IF([test "x${with_pngdriver}" != "xno"], 724 [AC_CHECK_LIB([iconv], [main], [LIBS="${LIBS}"], [LIBS="-liconv ${LIBS}"])]) 725]) 726 727 728 729 730AM_CONDITIONAL([AMPNG], [false]) 731AM_CONDITIONAL([AMPDF], [false]) 732 733CHECK_GENERAL 734CHECK_IDXDBS 735CHECK_JAVA 736CHECK_HPDF 737CHECK_AXIS2C 738CHECK_PNGDRIVER 739 740AX_LIB_MYSQL 741AX_LIB_POSTGRESQL 742 743 744 745 746dnl "Export" these variables for PCRE 747 748AC_SUBST([HAVE_MEMMOVE]) 749AC_SUBST([HAVE_STRERROR]) 750AC_SUBST([PCRE_MAJOR]) 751AC_SUBST([PCRE_MINOR]) 752AC_SUBST([PCRE_DATE]) 753AC_SUBST([PCRE_VERSION]) 754AC_SUBST([PCRE_LIB_VERSION]) 755AC_SUBST([PCRE_POSIXLIB_VERSION]) 756AC_SUBST([POSIX_MALLOC_THRESHOLD]) 757 758 759 760 761# Enable debugging: --enable-debug, sets CFLAGS 762 763AC_ARG_ENABLE([debug], 764[AS_HELP_STRING([--enable-debug], [debug (-g option on compiler)])]) 765 766AS_IF([test "x${enable_debug}" = "xyes"], [AS_VAR_APPEND([CFLAGS], [" -g"])]) 767 768 769 770 771# Turn off irritating linker warnings in IRIX 772 773AS_CASE([${host_os}], 774[irix*], 775[ 776 CFLAGS="-Wl,-LD_MSG:off=85:off=84:off=16:off=134 ${CFLAGS}" 777]) 778 779 780 781 782# Enable the large file interface: --enable-large, appends CPPFLAGS 783 784AC_ARG_ENABLE([large], 785[AS_HELP_STRING([--enable-large], 786[over 2Gb file support @<:@default=yes@:>@])]) 787 788AC_MSG_CHECKING([for large file support]) 789 790AS_IF([test "x${enable_large}" = "xno"], 791[ 792 AC_MSG_RESULT([no]) 793], 794[ 795 AS_CASE([${host_os}], 796 [linux*], 797 [ 798 AS_VAR_APPEND([CPPFLAGS], [" -DAJ_LinuxLF"]) 799 AS_VAR_APPEND([CPPFLAGS], [" -D_LARGEFILE_SOURCE"]) 800 AS_VAR_APPEND([CPPFLAGS], [" -D_LARGEFILE64_SOURCE"]) 801 AS_VAR_APPEND([CPPFLAGS], [" -D_FILE_OFFSET_BITS=64"]) 802 ], 803 [freebsd*], 804 [ 805 AS_VAR_APPEND([CPPFLAGS], [" -DAJ_FreeBSDLF"]) 806 ], 807 [solaris*], 808 [ 809 AS_VAR_APPEND([CPPFLAGS], [" -DAJ_SolarisLF"]) 810 AS_VAR_APPEND([CPPFLAGS], [" -D_LARGEFILE_SOURCE"]) 811 AS_VAR_APPEND([CPPFLAGS], [" -D_FILE_OFFSET_BITS=64"]) 812 ], 813 [osf*], 814 [ 815 AS_VAR_APPEND([CPPFLAGS], [" -DAJ_OSF1LF"]) 816 ], 817 [irix*], 818 [ 819 AS_VAR_APPEND([CPPFLAGS], [" -DAJ_IRIXLF"]) 820 AS_VAR_APPEND([CPPFLAGS], [" -D_LARGEFILE64_SOURCE"]) 821 ], 822 [aix*], 823 [ 824 AS_VAR_APPEND([CPPFLAGS], [" -DAJ_AIXLF"]) 825 AS_VAR_APPEND([CPPFLAGS], [" -D_LARGE_FILES"]) 826 ], 827 [hpux*], 828 [ 829 AS_VAR_APPEND([CPPFLAGS], [" -DAJ_HPUXLF"]) 830 AS_VAR_APPEND([CPPFLAGS], [" -D_LARGEFILE_SOURCE"]) 831 AS_VAR_APPEND([CPPFLAGS], [" -D_FILE_OFFSET_BITS=64"]) 832 ], 833 [darwin*], 834 [ 835 AS_VAR_APPEND([CPPFLAGS], [" -DAJ_MACOSXLF"]) 836 ]) 837 838 AC_MSG_RESULT([yes]) 839]) 840 841 842 843 844# Enable libraries provided by the system rather than EMBOSS: 845# --enable-systemlibs, sets ESYSTEMLIBS 846 847AC_ARG_ENABLE([systemlibs], 848[AS_HELP_STRING([--enable-systemlibs], [utility for RPM/dpkg bundles])]) 849 850AM_CONDITIONAL([ESYSTEMLIBS], [test "x${enable_systemlibs}" = "xyes"]) 851 852 853 854 855# Enable the purify tool: --enable-purify, sets CC and LIBTOOL 856 857AC_ARG_ENABLE([purify], 858[AS_HELP_STRING([--enable-purify], [purify])]) 859 860AC_MSG_CHECKING([for purify]) 861 862AS_IF([test "x${enable_purify}" = "xyes"], 863[ 864dnl if(purify -version) < /dev/null > /dev/null 2>&1; then 865 CC="purify --chain-length=20 -best-effort -windows=yes gcc -g" 866 LIBTOOL="${LIBTOOL} --tag=CC" 867 AC_MSG_RESULT([yes]) 868dnl fi 869], 870[ 871 AC_MSG_RESULT([no]) 872]) 873 874# Enable GCC profiling: --enable-gccprofile, appends CFLAGS and LDFLAGS 875 876if test "x${with_gccprofile}" = "xyes" ; then 877 CFLAGS="${CFLAGS} -pg" 878 LDFLAGS="${LDFLAGS} -pg" 879fi 880 881 882 883 884# Enable GCOV pcoverage analysis: --enable-gcov, appends CFLAGS 885 886if test "x${with_gcov}" = "xyes" ; then 887 CFLAGS="${CFLAGS} -fprofile-arcs -ftest-coverage" 888fi 889 890 891 892 893dnl Set extra needed compiler flags 894if test "x${CC}" = "xcc"; then 895 case "${host}" in 896 alpha*-dec-osf*) CFLAGS="${CFLAGS} -ieee";; 897 esac 898fi 899 900AM_CONDITIONAL([PURIFY], [test "x${enable_purify}" = "xyes"]) 901 902 903 904 905dnl Test for cygwin to set AM_LDFLAGS in library & apps Makefile.ams 906dnl Replaces original version which used 'expr' and so wasn't entirely 907dnl portable. 908platform_cygwin="no" 909AC_MSG_CHECKING([for cygwin]) 910case "${host}" in 911 *-*-mingw*|*-*-cygwin*) 912 platform_cygwin="yes" 913 ;; 914 *) 915 platform_cygwin="no" 916 ;; 917esac 918AC_MSG_RESULT([${platform_cygwin}]) 919AM_CONDITIONAL([ISCYGWIN], [test "x${platform_cygwin}" = "xyes"]) 920 921 922 923 924dnl Tests for AIX 925dnl If shared needs -Wl,-G in plplot,ajax,nucleus, -lX11 in plplot, 926dnl and -Wl,brtl -Wl,-bdynamic in emboss 927dnl We therefore need a static test as well 928needajax="no" 929 930AS_CASE([${host_os}], 931[aix*], 932[AM_CONDITIONAL([ISAIXIA64], [true])], 933[AM_CONDITIONAL([ISAIXIA64], [false])]) 934 935AM_CONDITIONAL([ISSHARED], [test "x${enable_shared}" = "xyes"]) 936 937AS_CASE([${host_os}], 938[aix*], 939[ 940 AS_IF([test -d ajax/.libs], 941 [AS_ECHO(["AIX ajax/.libs exists"])], [mkdir ajax/.libs]) 942 943 AS_CASE([${host_os}], 944 [aix5*], [needajax="no"], 945 [aix4.3.3*], [needajax="yes"], 946 [needajax="no"]) 947]) 948 949AM_CONDITIONAL([NEEDAJAX], [test "x${needajax}" = "xyes"]) 950 951 952 953 954# HP-UX needs -lsec for shadow passwords 955 956AS_CASE([${host_os}], 957[hpux*], 958[AS_VAR_APPEND([LDFLAGS], [" -lsec"])]) 959 960 961 962 963# GNU mcheck functions: --enable-mcheck, defines HAVE_MCHECK 964 965AC_ARG_ENABLE([mcheck], 966[AS_HELP_STRING([--enable-mcheck], 967[mcheck and mprobe memory allocation test])]) 968 969AS_IF([test "x${enable_mcheck}" = "xyes"], [AC_CHECK_FUNCS([mcheck])]) 970 971 972 973 974# Collect AJAX statistics: --enable-savestats, defines AJ_SAVESTATS 975 976AC_ARG_ENABLE([savestats], 977[AS_HELP_STRING([--enable-savestats], 978[save AJAX statistics and print with debug output])]) 979 980AC_MSG_CHECKING([for savestats]) 981 982AS_IF([test "x${enable_savestats}" = "xyes"], 983[ 984 AC_DEFINE([AJ_SAVESTATS], [1], 985 [Define to 1 to collect AJAX library usage statistics.]) 986 AC_MSG_RESULT([yes]) 987], 988[ 989 AC_MSG_RESULT([no]) 990]) 991 992 993 994 995AC_CONFIG_FILES([Makefile 996 ajax/Makefile 997 ajax/acd/Makefile 998 ajax/ajaxdb/Makefile 999 ajax/core/Makefile 1000 ajax/ensembl/Makefile 1001 ajax/expat/Makefile 1002 ajax/graphics/Makefile 1003 ajax/pcre/Makefile 1004 ajax/zlib/Makefile 1005 doc/Makefile 1006 doc/manuals/Makefile 1007 doc/programs/Makefile 1008 doc/programs/html/Makefile 1009 doc/programs/text/Makefile 1010 doc/tutorials/Makefile 1011 emboss/Makefile 1012 emboss/acd/Makefile 1013 emboss/data/AAINDEX/Makefile 1014 emboss/data/CODONS/Makefile 1015 emboss/data/JASPAR_CNE/Makefile 1016 emboss/data/JASPAR_CORE/Makefile 1017 emboss/data/JASPAR_FAM/Makefile 1018 emboss/data/JASPAR_PBM/Makefile 1019 emboss/data/JASPAR_PBM_HLH/Makefile 1020 emboss/data/JASPAR_PBM_HOMEO/Makefile 1021 emboss/data/JASPAR_PHYLOFACTS/Makefile 1022 emboss/data/JASPAR_POLII/Makefile 1023 emboss/data/JASPAR_SPLICE/Makefile 1024 emboss/data/Makefile 1025 emboss/data/OBO/Makefile 1026 emboss/data/PRINTS/Makefile 1027 emboss/data/PROSITE/Makefile 1028 emboss/data/REBASE/Makefile 1029 emboss/data/TAXONOMY/Makefile 1030 emboss/index/Makefile 1031 jemboss/Makefile 1032 jemboss/runJemboss.sh 1033 jemboss/images/Makefile 1034 jemboss/lib/Makefile 1035 jemboss/lib/axis/Makefile 1036 jemboss/resources/Makefile 1037 jemboss/utils/Makefile 1038 nucleus/Makefile 1039 plplot/Makefile 1040 plplot/lib/Makefile 1041 test/Makefile 1042 test/data/Makefile 1043 test/embl/Makefile 1044 test/genbank/Makefile 1045 test/pir/Makefile 1046 test/swiss/Makefile 1047 test/swnew/Makefile 1048 test/testdb/Makefile 1049]) 1050 1051AC_OUTPUT 1052