1 /* @source seqret application
2 **
3 ** Return a sequence
4 **
5 ** @author Copyright (C) Peter Rice
6 ** @@
7 **
8 ** This program is free software; you can redistribute it and/or
9 ** modify it under the terms of the GNU General Public License
10 ** as published by the Free Software Foundation; either version 2
11 ** of the License, or (at your option) any later version.
12 **
13 ** This program is distributed in the hope that it will be useful,
14 ** but WITHOUT ANY WARRANTY; without even the implied warranty of
15 ** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
16 ** GNU General Public License for more details.
17 **
18 ** You should have received a copy of the GNU General Public License
19 ** along with this program; if not, write to the Free Software
20 ** Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
21 ******************************************************************************/
22
23 #include "emboss.h"
24
25
26
27
28 /* @prog maskambignuc **********************************************************
29 **
30 ** Masks all ambiguity characters in nucleotide sequences with N
31 **
32 ******************************************************************************/
33
main(int argc,char ** argv)34 int main(int argc, char **argv)
35 {
36 AjPSeqall seqall;
37 AjPSeqout seqout;
38 AjPSeq seq = NULL;
39
40 embInit("maskambignuc", argc, argv);
41
42 seqout = ajAcdGetSeqoutall("outseq");
43 seqall = ajAcdGetSeqall("sequence");
44
45 while(ajSeqallNext(seqall, &seq))
46 ajSeqoutWriteSeq(seqout, seq);
47
48 ajSeqoutClose(seqout);
49
50 ajSeqallDel(&seqall);
51 ajSeqDel(&seq);
52 ajSeqoutDel(&seqout);
53
54 embExit();
55
56 return 0;
57 }
58