1# server.srs 2011-01-04 14:00:00 2 3# Gene dictionaries 4 5DB unilib [ 6 type: "text" 7 format: "text" 8 field: "id ! identifier" 9 example: "99" 10 hasacc: "N" 11] 12 13DB unigene [ 14 type: "text" 15 format: "text" 16 field: "id ! identifier" 17 example: "Hs.1004" 18] 19 20DB hgnc [ 21 type: "text" 22 format: "text" 23 field: "id ! identifier" 24 example: "1001" 25] 26 27DB entrezgene [ 28 type: "text" 29 format: "text" 30 field: "id ! identifier" 31 example: "100" 32] 33 34# Gene ontology resources 35 36DB edam [ 37 type: "obo" 38 format: "obo" 39 hasacc: "N" 40# fields: "id,nam,des,ns,cc,syn,isa,lnk,all,allids" 41 field: "id ! identifier without the prefix" 42 field: "nam Name ! words in the name" 43 field: "des Description ! words in the description" 44 field: "ns Namespace ! namespace" 45 field: "cc Comment ! words in the comments" 46 field: "syn Synonym ! synonym(s)" 47 field: "isa Is_a ! parent identifier from is_a relation(s)" 48 field: "lnk Link ! identifier(s) from has_input relation(s)" 49 field: "all alltext ! all text index terms" 50 field: "allids ! all identifiers" 51 example: "0001234" 52] 53 54DB go [ 55 type: "obo" 56 format: "obo" 57# fields: "id,acc,nam,def,syn,ref,isa,pof,all,allids" 58 field: "id ! identifier without the prefix" 59 field: "acc Accession ! identifier with the go: prefix" 60 field: "nam Name ! words in the name" 61 field: "def Definition ! words in the definition" 62 field: "syn Synonym ! synonym(s)" 63 field: "ref Reference ! Cross-reference" 64 field: "isa Is_a ! parent identifier from is_a relation(s)" 65 field: "pof PartOf ! identifier from part_of relation(s)" 66 field: "all alltext ! all text index terms" 67 field: "allids ! all identifiers" 68 example: "0000016" 69] 70 71DB goa [ 72 type: "text" 73 format: "text" 74# fields: "id,db,dbi,dbos,qual,goid,dbr,evid,wth,asp,onam, 75# syn,otyp,tax,dat,assby,all,allids" 76 field: "id ! identifier without the prefix" 77 field: "db ! database from which annotated entry has been taken" 78 field: "dbo dbobject ! unique identifier in the DB for the item being annotated" 79 field: "dbos dbosym ! symbol to which dbobject is matched" 80 field: "qual Qualifier ! qualifier flag" 81 field: "dbr dbref ! citation" 82 field: "evid evidence ! evidence" 83 field: "wth with ! associated with identifier" 84 field: "asp aspect ! aspect (function, process, component)" 85 field: "onam oname ! name of gene or gene product" 86 field: "syn Synonym ! synonym(s)" 87 field: "otyp otype ! entity type" 88 field: "tax taxon ! taxon identifier" 89 field: "assby AssignedBy ! assigned by database" 90 field: "all alltext ! all text index terms" 91 field: "allids ! all identifiers" 92 example: "a100001" 93] 94 95## Nucleotide sequence databases 96# 97#DB embl [ 98# type: "nucleotide nucfeatures" 99# format: "embl" 100## fields: "id,topo,mol,cla,div,sl,acc,pac,sv,crd,relc,crlu,relu,des,gpi, 101## key,org,taxon,txi,ogn,lnk,ulib,subaddr,pat,scd,rp,pmd,grp, 102## aut,tit,jnl,vol,fp,yr,ftk,ftq,prd,lat,long,ge, 103## ftd,fbg,ftnd,ftl,cti,ctn" 104# field: "id ! identifier" 105# field: "topo Topology ! Topology" 106# field: "mol Molecule ! Molecule" 107# field: "cla Class ! Data class" 108# field: "div Division ! Division" 109# field: "sl SeqLength ! Sequence length" 110# field: "acc AccNumber ! Accession number" 111# field: "pac PrimAccNumber ! Primary accession number" 112# field: "sv SeqVersion ! Sequence version" 113# field: "crd DateCreated ! Data created" 114# field: "relc RelCreated ! Release created" 115# field: "crlu LastUpdated ! Data last updated" 116# field: "relu RelUpdated ! Release last updated" 117# field: "des Description ! Description" 118# field: "gpi GenomeProjectID ! Genome project ID" 119# field: "key Keywords ! Keywords" 120# field: "org Organism ! Organism name" 121# field: "taxon ! Taxon name" 122# field: "txi NCBI_TaxId ! NCBI taxon id" 123# field: "ogn Organelle ! Organelle" 124# field: "lnk Link ! Link" 125# field: "ulib UniLibID ! UniLib id" 126# field: "subaddr SubAddress ! Submitter address" 127# field: "pat Patent ! Patent" 128# field: "scd SeqCrcDigest ! Sequence CRC digest" 129# field: "rp RefPosition ! Reference position" 130# field: "pmd PubMedID ! PubMed ID" 131# field: "grp RefGroup ! Reference group" 132# field: "aut Authors ! Authors" 133# field: "tit Title ! Title" 134# field: "jnl Journal ! Journal" 135# field: "vol Volume ! Volume" 136# field: "fp FirstPage ! First page" 137# field: "yr Year ! Year" 138# field: "ftk FtKey ! Feature key" 139# field: "ftq FtQualifier ! Feature qualifier" 140# field: "prd ProteinID ! Protein ID" 141# field: "lat Latitude ! Latitude" 142# field: "long Longitude ! Longitude" 143# field: "GE Gene ! Gene name" 144# field: "ftd FtDescription ! Feature description" 145# field: "ftbg FtBegin ! Feature start" 146# field: "ftnd FtEnd ! Feature end" 147# field: "ftl FtLength ! Feature length" 148# field: "cti CountedItem ! Counted item" 149# field: "ctn CountedN ! Counted number" 150# field: "all alltext ! all text index terms" 151# field: "allids ! all identifiers" 152# example: "x13776" 153#] 154 155#DB emblconexp [ 156# type: "nucleotide" 157# format: "embl" 158# example: "ch672413" 159#] 160 161#DB emblmga [ 162# type: "nucleotide" 163# format: "embl" 164# example: "aaaf0000000" 165#] 166 167#DB emblnew [ 168# type: "nucleotide nucfeatures" 169# format: "embl" 170## fields: "id,topo,mol,cla,div,sl,acc,pac,sv,crd,relc,crlu,relu,des,gpi, 171## key,org,taxon,txi,ogn,lnk,ulib,subaddr,pat,scd,rp,pmd,grp, 172## aut,tit,jnl,vol,fp,yr,ftk,ftq,prd,lat,long,ge, 173## ftd,fbg,ftnd,ftl,cti,ctn" 174# field: "id ! identifier" 175# field: "topo Topology ! Topology" 176# field: "mol Molecule ! Molecule" 177# field: "cla Class ! Data class" 178# field: "div Division ! Division" 179# field: "sl SeqLength ! Sequence length" 180# field: "acc AccNumber ! Accession number" 181# field: "pac PrimAccNumber ! Primary accession number" 182# field: "sv SeqVersion ! Sequence version" 183# field: "crd DateCreated ! Data created" 184# field: "relc RelCreated ! Release created" 185# field: "crlu LastUpdated ! Data last updated" 186# field: "relu RelUpdated ! Release last updated" 187# field: "des Description ! Description" 188# field: "gpi GenomeProjectID ! Genome project ID" 189# field: "key Keywords ! Keywords" 190# field: "org Organism ! Organism name" 191# field: "taxon ! Taxon name" 192# field: "txi NCBI_TaxId ! NCBI taxon id" 193# field: "ogn Organelle ! Organelle" 194# field: "lnk Link ! Link" 195# field: "ulib UniLibID ! UniLib id" 196# field: "subaddr SubAddress ! Submitter address" 197# field: "pat Patent ! Patent" 198# field: "scd SeqCrcDigest ! Sequence CRC digest" 199# field: "rp RefPosition ! Reference position" 200# field: "pmd PubMedID ! PubMed ID" 201# field: "grp RefGroup ! Reference group" 202# field: "aut Authors ! Authors" 203# field: "tit Title ! Title" 204# field: "jnl Journal ! Journal" 205# field: "vol Volume ! Volume" 206# field: "fp FirstPage ! First page" 207# field: "yr Year ! Year" 208# field: "ftk FtKey ! Feature key" 209# field: "ftq FtQualifier ! Feature qualifier" 210# field: "prd ProteinID ! Protein ID" 211# field: "lat Latitude ! Latitude" 212# field: "long Longitude ! Longitude" 213# field: "GE Gene ! Gene name" 214# field: "ftd FtDescription ! Feature description" 215# field: "ftbg FtBegin ! Feature start" 216# field: "ftnd FtEnd ! Feature end" 217# field: "ftl FtLength ! Feature length" 218# field: "cti CountedItem ! Counted item" 219# field: "ctn CountedN ! Counted number" 220# field: "all alltext ! all text index terms" 221# field: "allids ! all identifiers" 222# example: "x13776" 223#] 224 225#DB emblconnew [ 226# type: "nucleotide" 227# format: "embl" 228# example: "ch672413" 229#] 230 231# Nucleotide sequence databases - subsections 232 233# Nucleotide related databases 234 235# UniProt Universal Protein Resource 236 237DB uniprot [ 238 type: "protein protfeatures" 239 format: "swiss" 240 field: "id ! Identifier" 241 field: "enm EntryName ! Entrry name" 242 field: "cla Class ! Data class" 243 field: "acc AccNumber ! Accession number" 244 field: "pac PrimAccNumber ! Primary accession number" 245 field: "sv SeqVersion ! Sequence version" 246 field: "crd DateCreated ! Date created" 247 field: "sqd DateSeqUpdate ! Date sequence updated" 248 field: "annd DataAnnUpdate ! Date annotation updated" 249 field: "des Description ! Description" 250 field: "gen GeneName ! Gene name" 251 field: "syn Synonym ! Synonym gene name" 252 field: "ord OrderedLocus ! Ordered locus" 253 field: "orf ORFnames ! ORF names" 254 field: "ecn ECNumber ! EC number" 255 field: "org Organism ! Organism name" 256 field: "spc Species ! Species name" 257 field: "tax Taxonomy ! Taxon name" 258 field: "ogn Organelle ! Organelle" 259 field: "txi NCBI_TaxId ! NCBI Taxon id" 260 field: "taxc TaxCount ! Taxon count" 261 field: "oht OrganismHostTaxId ! Organism host taxon id" 262 field: "ohn OrganismHostName ! Organism host name" 263 field: "poex ProteinExistence ! Protein existence evidence" 264 field: "key Keywords ! Keywords" 265 field: "prd ProteinID ! Protein id" 266 field: "sl SeqLength ! Sequence length" 267 field: "mow MolWeight ! Molecular weight" 268 field: "crc ! CRC" 269 field: "drx DBxref ! Db xref" 270 field: "midx MedlineID ! Medline ID" 271 field: "pnm swProtName! Swissprot protein name" 272 field: "isoid Isoform ! Isoform" 273 field: "dblink ! DB link" 274 field: "scd SeqCrcDigest ! Sequence CRC digest" 275 field: "aut Authors ! Authors" 276 field: "tit Title ! Title" 277 field: "rp RefPosition ! Reference position" 278 field: "grp RefGroup ! Reference group" 279 field: "rcc RefCommentCode ! Reference comment code" 280 field: "rc RefComment ! Reference comment" 281 field: "jnl Journal ! Journal" 282 field: "vol Volume ! Volume" 283 field: "fp FirstPage ! First page" 284 field: "yr Year ! Year" 285 field: "cit Citation ! Citation" 286 field: "sub SubmissionDate ! Submission date" 287 field: "pat Patent ! Patent" 288 field: "pdt PatentDate ! Patent date" 289 field: "mid MedlineID ! Medline ID" 290 field: "cct CommentType ! Comment type" 291 field: "dbn DbName ! Database name" 292 field: "dr DBxref ! Db xref" 293 field: "ftk FtKey ! Feature key" 294 field: "ftl FtLength ! Feature length" 295 field: "ftd FtDescription ! Feature description" 296 field: "ftbg FtBegin ! Feature start" 297 field: "ftnd FtEnd ! Feature end" 298 field: "ftrI FtResid ! Feature residue id" 299 field: "ci CountItem ! Count item" 300 field: "cn CountN ! Count number" 301 field: "all alltext ! all text index terms" 302 field: "allids ! all identifiers" 303 example: "hba_human" 304] 305 306DB swissprot [ 307 type: "protein protfeatures" 308 format: "swiss" 309 field: "id ! Identifier" 310 field: "enm EntryName ! Entrry name" 311 field: "cla Class ! Data class" 312 field: "acc AccNumber ! Accession number" 313 field: "pac PrimAccNumber ! Primary accession number" 314 field: "sv SeqVersion ! Sequence version" 315 field: "crd DateCreated ! Date created" 316 field: "sqd DateSeqUpdate ! Date sequence updated" 317 field: "annd DataAnnUpdate ! Date annotation updated" 318 field: "des Description ! Description" 319 field: "gen GeneName ! Gene name" 320 field: "syn Synonym ! Synonym gene name" 321 field: "ord OrderedLocus ! Ordered locus" 322 field: "orf ORFnames ! ORF names" 323 field: "ecn ECNumber ! EC number" 324 field: "org Organism ! Organism name" 325 field: "spc Species ! Species name" 326 field: "tax Taxonomy ! Taxon name" 327 field: "ogn Organelle ! Organelle" 328 field: "txi NCBI_TaxId ! NCBI Taxon id" 329 field: "taxc TaxCount ! Taxon count" 330 field: "oht OrganismHostTaxId ! Organism host taxon id" 331 field: "ohn OrganismHostName ! Organism host name" 332 field: "poex ProteinExistence ! Protein existence evidence" 333 field: "key Keywords ! Keywords" 334 field: "prd ProteinID ! Protein id" 335 field: "sl SeqLength ! Sequence length" 336 field: "mow MolWeight ! Molecular weight" 337 field: "crc ! CRC" 338 field: "drx DBxref ! Db xref" 339 field: "midx MedlineID ! " 340 field: "pnm swProtName! Swissprot protein name" 341 field: "isoid Isoform ! Isoform" 342 field: "dblink ! DB link" 343 field: "scd SeqCrcDigest! Sequence CRC digest" 344 field: "aut Authors ! Authors" 345 field: "tit Title ! Title" 346 field: "rp RefPosition ! Reference position" 347 field: "grp RefGroup ! Reference group" 348 field: "rcc RefCommentCode ! Reference comment code" 349 field: "rc RefComment ! Reference comment" 350 field: "jnl Journal ! Journal" 351 field: "vol Volume ! Volume" 352 field: "fp FirstPage ! First page" 353 field: "yr Year ! Year" 354 field: "cit Citation ! Citation" 355 field: "sub SubmissionDate ! Submission date" 356 field: "pat Patent ! Patent" 357 field: "pdt PatentDate ! Patent date" 358 field: "mid MedlineID ! Medline ID" 359 field: "cct CommentType ! Comment type" 360 field: "dbn DbName ! Database name" 361 field: "dr DBxref ! Db xref" 362 field: "ftk FtKey ! Feature key" 363 field: "ftl FtLength ! Feature length" 364 field: "ftd FtDescription ! Feature description" 365 field: "ftbg FtBegin ! Feature start" 366 field: "ftnd FtEnd ! Feature end" 367 field: "ftrI FtResid ! Feature residue id" 368 field: "ci CountItem ! Count item" 369 field: "cn CountN ! Count number" 370 field: "all alltext ! all text index terms" 371 field: "allids ! all identifiers" 372 example: "" 373] 374 375DB sptrembl [ 376 type: "protein protfeatures" 377 format: "swiss" 378 field: "id ! Identifier" 379 field: "enm EntryName ! Entrry name" 380 field: "cla Class ! Data class" 381 field: "acc AccNumber ! Accession number" 382 field: "pac PrimAccNumber ! Primary accession number" 383 field: "sv SeqVersion ! Sequence version" 384 field: "crd DateCreated ! Date created" 385 field: "sqd DateSeqUpdate ! Date sequence updated" 386 field: "annd DataAnnUpdate ! Date annotation updated" 387 field: "des Description ! Description" 388 field: "gen GeneName ! Gene name" 389 field: "syn Synonym ! Synonym gene name" 390 field: "ord OrderedLocus ! Ordered locus" 391 field: "orf ORFnames ! ORF names" 392 field: "ecn ECNumber ! EC number" 393 field: "org Organism ! Organism name" 394 field: "spc Species ! Species name" 395 field: "tax Taxonomy ! Taxon name" 396 field: "ogn Organelle ! Organelle" 397 field: "txi NCBI_TaxId ! NCBI Taxon id" 398 field: "taxc TaxCount ! Taxon count" 399 field: "oht OrganismHostTaxId ! Organism host taxon id" 400 field: "ohn OrganismHostName ! Organism host name" 401 field: "poex ProteinExistence ! Protein existence evidence" 402 field: "key Keywords ! Keywords" 403 field: "prd ProteinID ! Protein id" 404 field: "sl SeqLength ! Sequence length" 405 field: "mow MolWeight ! Molecular weight" 406 field: "crc ! CRC" 407 field: "drx DBxref ! Db xref" 408 field: "midx MedlineID ! " 409 field: "pnm swProtName! Swissprot protein name" 410 field: "isoid Isoform ! Isoform" 411 field: "dblink ! DB link" 412 field: "scd SeqCrcDigest! Sequence CRC digest" 413 field: "aut Authors ! Authors" 414 field: "tit Title ! Title" 415 field: "rp RefPosition ! Reference position" 416 field: "grp RefGroup ! Reference group" 417 field: "rcc RefCommentCode ! Reference comment code" 418 field: "rc RefComment ! Reference comment" 419 field: "jnl Journal ! Journal" 420 field: "vol Volume ! Volume" 421 field: "fp FirstPage ! First page" 422 field: "yr Year ! Year" 423 field: "cit Citation ! Citation" 424 field: "sub SubmissionDate ! Submission date" 425 field: "pat Patent ! Patent" 426 field: "pdt PatentDate ! Patent date" 427 field: "mid MedlineID ! Medline ID" 428 field: "cct CommentType ! Comment type" 429 field: "dbn DbName ! Database name" 430 field: "dr DBxref ! Db xref" 431 field: "ftk FtKey ! Feature key" 432 field: "ftl FtLength ! Feature length" 433 field: "ftd FtDescription ! Feature description" 434 field: "ftbg FtBegin ! Feature start" 435 field: "ftnd FtEnd ! Feature end" 436 field: "ftrI FtResid ! Feature residue id" 437 field: "ci CountItem ! Count item" 438 field: "cn CountN ! Count number" 439 field: "all alltext ! all text index terms" 440 field: "allids ! all identifiers" 441 example: "" 442] 443 444DB uniref100 [ 445 type: "protein protfeatures" 446 format: "swiss" 447 field: "acc AccNumber ! Accession number" 448 field: "crlu LastUpdated ! Data last updated" 449 field: "des Description ! Description" 450 field: "sc MemberCount ! Member count" 451 field: "txi NCBI_TaxId ! NCBI taxon id" 452 field: "org Organism ! Organism name" 453 field: "sl SeqLength ! Sequence length" 454 field: "crc ! CRC" 455 field: "upid UniprotID ! Uniprot id" 456 field: "upacc UniprotACC ! Uniprot accession" 457 field: "upcid UniparcID ! Uniparc id" 458 field: "u90id Uniref90ID ! Uniref90 id" 459 field: "u50id Uniref50ID ! Uniref50 id" 460 field: "all AllText ! all text index terms" 461 field: "allids ! all identifiers" 462 example: "" 463] 464 465DB uniref90 [ 466 type: "protein protfeatures" 467 format: "swiss" 468 field: "acc AccNumber ! Accession number" 469 field: "crlu LastUpdated ! Data last updated" 470 field: "gdes GenDescription ! Description" 471 field: "sc MemberCount ! Member count" 472 field: "txi NCBI_TaxId ! NCBI taxon id" 473 field: "org Organism ! Organism name" 474 field: "rsq RepSeqLength ! representative sequence length" 475 field: "crc ! CRC" 476 field: "upid UniprotID ! Uniprot id" 477 field: "upacc UniprotACC ! Uniprot accession" 478 field: "uuid UniprotParcID ! Uniprot uniparc id" 479 field: "all AllText ! all text index terms" 480 field: "allids ! all identifiers" 481 example: "" 482] 483 484DB uniref50 [ 485 type: "protein" 486 format: "swiss" 487 field: "acc AccNumber ! Accession number" 488 field: "crlu LastUpdated ! Data last updated" 489 field: "gdes GenDescription ! Description" 490 field: "sc MemberCount ! Member count" 491 field: "txi NCBI_TaxId ! NCBI taxon id" 492 field: "org Organism ! Organism name" 493 field: "rsq RepSeqLength ! representative sequence length" 494 field: "crc ! CRC" 495 field: "upid UniprotID ! Uniprot id" 496 field: "upacc UniprotACC ! Uniprot accession" 497 field: "uuid UniprotParcID ! Uniprot uniparc id" 498 field: "all AllText ! all text index terms" 499 field: "allids ! all identifiers" 500 example: "" 501] 502 503DB uniparc [ 504 type: "protein" 505 format: "swiss" 506 field: "id ! Identifier" 507 field: "acc AccNumber ! Accession number" 508 field: "upscrc CheckSum ! Checksum" 509 field: "sl SeqLength ! Sequence length" 510 field: "scd SeqCrcDigest! Sequence CRC digest" 511 field: "prd ProteinID ! Protein id" 512 field: "upac UniProtAC ! Uniprot accession" 513 field: "upex UniProtExlude ! Uniprot exclusion" 514 field: "refdb Database ! Reference database" 515 field: "refdbi refDbId ! Reference database id" 516 field: "refdbsv ! Reference database sequence version" 517 field: "pdbc PDBChain ! PDB chain" 518 field: "refdbv RefDbVer ! Reference database version" 519 field: "refdba RefDbActive ! Reference database active" 520 field: "refdbc RefDbCreated ! Reference database created" 521 field: "refdbl RefDbLast ! Reference database last updated" 522 field: "gid ! NCBI GID" 523 field: "txi NCBI_TaxId ! NCBI taxon id" 524 field: "upacc UniProtAcc ! Uniprot accession" 525 field: "cti CountedItem ! Counted item" 526 field: "ctn CountedN ! Counted number" 527 field: "all AllText ! all text index terms" 528 field: "allids ! all identifiers" 529 example: "" 530] 531 532# Active protein sequence databases 533 534DB patent_prt [ 535 type: "protein" 536 format: "swiss" 537 field: "id ! identifier" 538 field: "topo Topology ! Topology" 539 field: "mol Molecule ! Molecule" 540 field: "cla Class ! Data class" 541 field: "div Division ! Division" 542 field: "sl SeqLength ! Sequence length" 543 field: "acc AccNumber ! Accession number" 544 field: "pac PrimAccNumber ! Primary accession number" 545 field: "sv SeqVersion ! Sequence version" 546 field: "crd DateCreated ! Data created" 547 field: "relc RelCreated ! Release created" 548 field: "crlu LastUpdated ! Data last updated" 549 field: "relu RelUpdated ! Release last updated" 550 field: "des Description ! Description" 551 field: "key Keywords ! Keywords" 552 field: "org Organism ! Organism name" 553 field: "taxon ! Taxon name" 554 field: "txi NCBI_TaxId ! NCBI taxon id" 555 field: "ogn Organelle ! Organelle" 556 field: "lnk Link ! Link" 557 field: "mow MolWeight ! Molecular weight" 558 field: "crc ! CRC" 559 field: "scd SeqCrcDigest ! Sequence CRC digest" 560 field: "po PatentOffice | patent office" 561 field: "rp RefPosition ! Reference position" 562 field: "grp RefGroup ! Reference group" 563 field: "aut Authors ! Authors" 564 field: "tit Title ! Title" 565 field: "yr Year ! Year" 566 field: "pat Patent | Patent" 567 field: "ftk FtKey ! Feature key" 568 field: "ftq FtQualifier ! Feature qualifier" 569 field: "ftd FtDescription ! Feature description" 570 field: "ftl FtLength ! Feature length" 571 field: "cti CountedItem ! Counted item" 572 field: "ctn CountedN ! Counted number" 573 field: "all AllText ! all text index terms" 574 field: "allids ! all identifiers" 575 example: "" 576] 577 578DB pir [ 579 type: "protein" 580 format: "pir" 581 field: "id ! Identifier" 582 field: "acc AccNumber ! Accession number" 583 field: "des Description ! Description" 584 field: "key Keywords ! Keywords" 585 field: "sfa Superfamily ! Superfamily" 586 field: "mot MoleculeType ! Molecule type" 587 field: "dat Date ! Date" 588 field: "org Organism ! Organism name" 589 field: "sl SeqLength ! Sequence length" 590 field: "scd SeqCrcDigest ! Sequence CRC digest" 591 field: "ftk FtKey ! Feature key" 592 field: "ftd FtDescription ! Feature description" 593 field: "ftl FtLength ! Feature length" 594 field: "flo FtLocation ! Feature location" 595 field: "aut Authors ! Authors" 596 field: "tit Title ! Title" 597 field: "jnl Journal ! Journal" 598 field: "vol Volume ! Volume" 599 field: "fp FirstPage ! First page" 600 field: "yr Year ! Year" 601 field: "rfn ReferenceNumber ! Reference number" 602 field: "mid MedlineID ! Medline ID" 603 field: "all alltext ! all text index terms" 604 field: "allids ! all identifiers" 605 example: "cchu" 606] 607 608# Protein function databases 609 610# Protein structure databases 611 612# Protein interaction databases (IntAct) 613 614# Enzymes, reactions and metabolic pathway databvases 615 616# Mutation and SNP databases 617 618# Other databases 619 620# EMBOSS Source Code 621 622# EMBLCDS grouped by 623 624 625 626