1# Makefile.in generated by automake 1.12.2 from Makefile.am.
2# test/data/Makefile.  Generated from Makefile.in by configure.
3
4# Copyright (C) 1994-2012 Free Software Foundation, Inc.
5
6# This Makefile.in is free software; the Free Software Foundation
7# gives unlimited permission to copy and/or distribute it,
8# with or without modifications, as long as this notice is preserved.
9
10# This program is distributed in the hope that it will be useful,
11# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
12# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
13# PARTICULAR PURPOSE.
14
15
16
17
18am__make_dryrun = \
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33    test $$am__dry = yes; \
34  }
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38am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
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42INSTALL_HEADER = $(INSTALL_DATA)
43transform = $(program_transform_name)
44NORMAL_INSTALL = :
45PRE_INSTALL = :
46POST_INSTALL = :
47NORMAL_UNINSTALL = :
48PRE_UNINSTALL = :
49POST_UNINSTALL = :
50build_triplet = x86_64-unknown-linux-gnu
51host_triplet = x86_64-unknown-linux-gnu
52subdir = test/data
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60	$(top_srcdir)/m4/ltversion.m4 $(top_srcdir)/m4/lt~obsolete.m4 \
61	$(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pkg.m4 \
62	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
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102         $(am__cd) "$$dir" && rm -f $$files; }; \
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104am__installdirs = "$(DESTDIR)$(pkgdatadir)"
105DATA = $(pkgdata_DATA)
106DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
107pkgdatadir = $(prefix)/share/$(PACKAGE)/test/data
108ACLOCAL = ${SHELL} /data/scratch/embossdist/missing --run aclocal-1.12
109AJAX_FIXED_ROOT = \"/data/scratch/embossdist/emboss\"
110AJAX_SYSTEM = \"Linux\"
111AMTAR = $${TAR-tar}
112ANT = /usr/bin/ant
113AR = ar
114AUTOCONF = ${SHELL} /data/scratch/embossdist/missing --run autoconf
115AUTOHEADER = ${SHELL} /data/scratch/embossdist/missing --run autoheader
116AUTOMAKE = ${SHELL} /data/scratch/embossdist/missing --run automake-1.12
117AWK = gawk
118AXIS2C_CFLAGS =
119AXIS2C_CPPFLAGS =
120AXIS2C_LDFLAGS =
121AXIS2C_LIBS =
122CC = gcc
123CCDEPMODE = depmode=gcc3
124CFLAGS =   -O2
125CPP = gcc -E
126CPPFLAGS =  -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64
127CXX = g++
128CXXCPP = g++ -E
129CXXDEPMODE = depmode=gcc3
130CXXFLAGS = -g -O2
131CYGPATH_W = echo
132DEFS = -DHAVE_CONFIG_H
133DEPDIR = .deps
134DEVWARN_CFLAGS =
135DLLTOOL = false
136DSYMUTIL =
137DUMPBIN =
138ECHO_C =
139ECHO_N = -n
140ECHO_T =
141EGREP = /usr/bin/grep -E
142EMBOSS_TOP = /data/scratch/embossdist
143EXEEXT =
144FGREP = /usr/bin/grep -F
145GREP = /usr/bin/grep
146HAVE_MEMMOVE =
147HAVE_STRERROR =
148INSTALL = /usr/bin/install -c
149INSTALL_DATA = ${INSTALL} -m 644
150INSTALL_PROGRAM = ${INSTALL}
151INSTALL_SCRIPT = ${INSTALL}
152INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
153JAR = /usr/bin/jar
154JAVA = /usr/bin/java
155JAVAC = /usr/bin/javac
156JAVA_CFLAGS =
157JAVA_CPPFLAGS = -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -DNO_AUTH
158JAVA_LDFLAGS =
159LD = /usr/bin/ld -m elf_x86_64
160LDFLAGS =
161LIBOBJS =
162LIBS = -lm  -lhpdf -lgd -lpng -lz -lm
163LIBTOOL = $(SHELL) $(top_builddir)/libtool
164LIPO =
165LN_S = ln -s
166LTLIBOBJS =
167MAKEINFO = ${SHELL} /data/scratch/embossdist/missing --run makeinfo
168MANIFEST_TOOL = :
169MKDIR_P = /usr/bin/mkdir -p
170MYSQL_CFLAGS = -I/usr/include/mysql -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4  -m64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -fno-strict-aliasing -fwrapv -fPIC  -fPIC -g -static-libgcc -fno-omit-frame-pointer -fno-strict-aliasing -DMY_PTHREAD_FASTMUTEX=1
171MYSQL_CONFIG = /usr/bin/mysql_config
172MYSQL_CPPFLAGS = -I/usr/include/mysql
173MYSQL_LDFLAGS = -L/usr/lib64/mysql -lmysqlclient -lpthread -lz -lm -lrt -lssl -lcrypto -ldl
174MYSQL_VERSION = 5.5.32
175NM = /usr/bin/nm -B
176NMEDIT =
177OBJDUMP = objdump
178OBJEXT = o
179OTOOL =
180OTOOL64 =
181PACKAGE = EMBOSS
182PACKAGE_BUGREPORT = emboss-bug@emboss.open-bio.org
183PACKAGE_NAME = EMBOSS
184PACKAGE_STRING = EMBOSS 6.6.0
185PACKAGE_TARNAME = EMBOSS
186PACKAGE_URL = http://emboss.open-bio.org/
187PACKAGE_VERSION = 6.6.0
188PATH_SEPARATOR = :
189PCRE_DATE = 11-Apr-2009
190PCRE_LIB_VERSION = 0:1:0
191PCRE_MAJOR = 7
192PCRE_MINOR = 9
193PCRE_POSIXLIB_VERSION = 0:0:0
194PCRE_VERSION = 7.9
195PKG_CONFIG = /usr/bin/pkg-config
196PKG_CONFIG_LIBDIR =
197PKG_CONFIG_PATH =
198POSIX_MALLOC_THRESHOLD = -DPOSIX_MALLOC_THRESHOLD=10
199POSTGRESQL_CFLAGS = -I/usr/include
200POSTGRESQL_CONFIG = /usr/bin/pg_config
201POSTGRESQL_CPPFLAGS = -I/usr/include
202POSTGRESQL_LDFLAGS = -L/usr/lib64 -lpq
203POSTGRESQL_VERSION = 9.2.4
204RANLIB = ranlib
205SED = /usr/bin/sed
206SET_MAKE =
207SHELL = /bin/sh
208STRIP = strip
209VERSION = 6.6.0
210WARN_CFLAGS =
211XLIB =  -lX11
212XMKMF =
213X_CFLAGS =
214X_EXTRA_LIBS =
215X_LIBS =
216X_PRE_LIBS =  -lSM -lICE
217abs_builddir = /data/scratch/embossdist/test/data
218abs_srcdir = /data/scratch/embossdist/test/data
219abs_top_builddir = /data/scratch/embossdist
220abs_top_srcdir = /data/scratch/embossdist
221ac_ct_AR = ar
222ac_ct_CC = gcc
223ac_ct_CXX = g++
224ac_ct_DUMPBIN =
225am__include = include
226am__leading_dot = .
227am__quote =
228am__tar = $${TAR-tar} chof - "$$tardir"
229am__untar = $${TAR-tar} xf -
230bindir = ${exec_prefix}/bin
231build = x86_64-unknown-linux-gnu
232build_alias =
233build_cpu = x86_64
234build_os = linux-gnu
235build_vendor = unknown
236builddir = .
237datadir = ${datarootdir}
238datarootdir = ${prefix}/share
239docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
240dvidir = ${docdir}
241exec_prefix = ${prefix}
242host = x86_64-unknown-linux-gnu
243host_alias =
244host_cpu = x86_64
245host_os = linux-gnu
246host_vendor = unknown
247htmldir = ${docdir}
248includedir = ${prefix}/include
249infodir = ${datarootdir}/info
250install_sh = ${SHELL} /data/scratch/embossdist/install-sh
251libdir = ${exec_prefix}/lib
252libexecdir = ${exec_prefix}/libexec
253localedir = ${datarootdir}/locale
254localstatedir = ${prefix}/var
255mandir = ${datarootdir}/man
256mkdir_p = $(MKDIR_P)
257oldincludedir = /usr/include
258pdfdir = ${docdir}
259prefix = /usr/local
260program_transform_name = s,x,x,
261psdir = ${docdir}
262sbindir = ${exec_prefix}/sbin
263sharedstatedir = ${prefix}/com
264srcdir = .
265sysconfdir = ${prefix}/etc
266target_alias =
267top_build_prefix = ../../
268top_builddir = ../..
269top_srcdir = ../..
270pkgdata_DATA = aaindex1.test prosite.dat prosite.doc prints.test withrefm \
271               site.dat cutg.codon \
272               dna.acedb dna.aln dna.asn1 dna.codata dna.embl dna.fasta \
273               dna.fitch dna.gcg dna.gcg8 dna.genbank dna.ig dna.m-acedb \
274               dna.m-codata dna.m-embl dna.m-fasta dna.m-fasta-long \
275               dna.m-ncbi dna.m-strider dna.msf dna.msf8 dna.ncbi \
276               dna.phylip dna.phylip3 dna.staden dna.strider dna.text \
277               feat.emft feat.fasta feat.pir \
278	       mw1.dat mw2.dat mw3.dat \
279               paamir.gff paamir.gff3 paamir.pep pax6_cdna.fasta \
280               prot.acedb prot.codata prot.fasta prot.gcg prot.gcg8 \
281               prot.ig prot.m-acedb prot.m-codata prot.m-fasta prot.m-nbrf \
282               prot.m-ncbi prot.m-swiss prot.nbrf prot.ncbi prot.swiss \
283               prot.text z83307.seq 104k.nbrf \
284               aligna.dna alignapart.dna alignb.dna \
285               aligna.prot alignapart.prot alignb.prot \
286               nuc.pat nucseq.pat nucsimple.pat \
287               tranalign.pep tranalign.seq vtest.seq opsd.msf untrimmed.seq
288
289all: all-am
290
291.SUFFIXES:
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294	  case '$(am__configure_deps)' in \
295	    *$$dep*) \
296	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
297	        && { if test -f $@; then exit 0; else break; fi; }; \
298	      exit 1;; \
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300	done; \
301	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu test/data/Makefile'; \
302	$(am__cd) $(top_srcdir) && \
303	  $(AUTOMAKE) --gnu test/data/Makefile
304.PRECIOUS: Makefile
305Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
306	@case '$?' in \
307	  *config.status*) \
308	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
309	  *) \
310	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
311	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
312	esac;
313
314$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
315	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
316
317$(top_srcdir)/configure:  $(am__configure_deps)
318	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
319$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
320	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
321$(am__aclocal_m4_deps):
322
323mostlyclean-libtool:
324	-rm -f *.lo
325
326clean-libtool:
327	-rm -rf .libs _libs
328install-pkgdataDATA: $(pkgdata_DATA)
329	@$(NORMAL_INSTALL)
330	@list='$(pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
331	if test -n "$$list"; then \
332	  echo " $(MKDIR_P) '$(DESTDIR)$(pkgdatadir)'"; \
333	  $(MKDIR_P) "$(DESTDIR)$(pkgdatadir)" || exit 1; \
334	fi; \
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340	  echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(pkgdatadir)'"; \
341	  $(INSTALL_DATA) $$files "$(DESTDIR)$(pkgdatadir)" || exit $$?; \
342	done
343
344uninstall-pkgdataDATA:
345	@$(NORMAL_UNINSTALL)
346	@list='$(pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
347	files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
348	dir='$(DESTDIR)$(pkgdatadir)'; $(am__uninstall_files_from_dir)
349tags: TAGS
350TAGS:
351
352ctags: CTAGS
353CTAGS:
354
355cscope cscopelist:
356
357
358distdir: $(DISTFILES)
359	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
360	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
361	list='$(DISTFILES)'; \
362	  dist_files=`for file in $$list; do echo $$file; done | \
363	  sed -e "s|^$$srcdirstrip/||;t" \
364	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
365	case $$dist_files in \
366	  */*) $(MKDIR_P) `echo "$$dist_files" | \
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368			   sort -u` ;; \
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381	    cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
382	  else \
383	    test -f "$(distdir)/$$file" \
384	    || cp -p $$d/$$file "$(distdir)/$$file" \
385	    || exit 1; \
386	  fi; \
387	done
388check-am: all-am
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400install-am: all-am
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403installcheck: installcheck-am
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407	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
408	      install; \
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410	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
411	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
412	    "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \
413	fi
414mostlyclean-generic:
415
416clean-generic:
417
418distclean-generic:
419	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
420	-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
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422maintainer-clean-generic:
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424	@echo "it deletes files that may require special tools to rebuild."
425clean: clean-am
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427clean-am: clean-generic clean-libtool mostlyclean-am
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429distclean: distclean-am
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433dvi: dvi-am
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435dvi-am:
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437html: html-am
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439html-am:
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441info: info-am
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443info-am:
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445install-data-am: install-pkgdataDATA
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447install-dvi: install-dvi-am
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449install-dvi-am:
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453install-html: install-html-am
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455install-html-am:
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459install-info-am:
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465install-pdf-am:
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467install-ps: install-ps-am
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469install-ps-am:
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471installcheck-am:
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473maintainer-clean: maintainer-clean-am
474	-rm -f Makefile
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477mostlyclean: mostlyclean-am
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479mostlyclean-am: mostlyclean-generic mostlyclean-libtool
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481pdf: pdf-am
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483pdf-am:
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485ps: ps-am
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487ps-am:
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489uninstall-am: uninstall-pkgdataDATA
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491.MAKE: install-am install-strip
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493.PHONY: all all-am check check-am clean clean-generic clean-libtool \
494	distclean distclean-generic distclean-libtool distdir dvi \
495	dvi-am html html-am info info-am install install-am \
496	install-data install-data-am install-dvi install-dvi-am \
497	install-exec install-exec-am install-html install-html-am \
498	install-info install-info-am install-man install-pdf \
499	install-pdf-am install-pkgdataDATA install-ps install-ps-am \
500	install-strip installcheck installcheck-am installdirs \
501	maintainer-clean maintainer-clean-generic mostlyclean \
502	mostlyclean-generic mostlyclean-libtool pdf pdf-am ps ps-am \
503	uninstall uninstall-am uninstall-pkgdataDATA
504
505
506# Tell versions [3.59,3.63) of GNU make to not export all variables.
507# Otherwise a system limit (for SysV at least) may be exceeded.
508.NOEXPORT:
509