| .. | | 14-Oct-2021 | - |
| 2RatesAnalyses/ | H | 14-Oct-2021 | - | 1,896 | 1,657 |
| Distances/ | H | 14-Oct-2021 | - | 1,293 | 1,114 |
| GUI/ | H | 14-Oct-2021 | - | 2 | 1 |
| Miscellaneous/phylohandbook/ | H | 14-Oct-2021 | - | 1,961 | 1,605 |
| ProteinAnalyses/ | H | 14-Oct-2021 | - | 1,167 | 854 |
| Samplers/ | H | 14-Oct-2021 | - | 927 | 730 |
| SelectionAnalyses/ | H | 14-Oct-2021 | - | 13,905 | 10,468 |
| TemplateModels/ | H | 14-Oct-2021 | - | 23,679 | 21,534 |
| Utility/ | H | 14-Oct-2021 | - | 6,553 | 5,457 |
| libv3/ | H | 14-Oct-2021 | - | 19,196 | 16,125 |
| AAModelComparison.bf | H A D | 14-Oct-2021 | 5.3 KiB | 243 | 188 |
| AddABias.ibf | H A D | 14-Oct-2021 | 9 KiB | 284 | 235 |
| AnalyzeCodonData.bf | H A D | 14-Oct-2021 | 1.2 KiB | 54 | 36 |
| AnalyzeDiNucData.bf | H A D | 14-Oct-2021 | 661 | 29 | 15 |
| AnalyzeNucDataFreq.bf | H A D | 14-Oct-2021 | 869 | 43 | 27 |
| AnalyzeNucProtData.bf | H A D | 14-Oct-2021 | 868 | 29 | 18 |
| BGM.bf | H A D | 14-Oct-2021 | 19.9 KiB | 415 | 313 |
| BivariateCodonRateAnalysis.bf | H A D | 14-Oct-2021 | 3 KiB | 121 | 90 |
| BranchSiteREL.bf | H A D | 14-Oct-2021 | 38.2 KiB | 1,094 | 843 |
| BranchSiteRELMultiModel.bf | H A D | 14-Oct-2021 | 20.1 KiB | 576 | 443 |
| CleanGaps.bf | H A D | 14-Oct-2021 | 3.2 KiB | 115 | 96 |
| CleanStopCodons.bf | H A D | 14-Oct-2021 | 5.5 KiB | 198 | 162 |
| ClusterAnalysis.bf | H A D | 14-Oct-2021 | 10.4 KiB | 536 | 454 |
| ClusterByDistanceRange.bf | H A D | 14-Oct-2021 | 13.5 KiB | 605 | 496 |
| CodonBivariateRateProcessor.bf | H A D | 14-Oct-2021 | 10.7 KiB | 423 | 316 |
| CodonModelCompare.bf | H A D | 14-Oct-2021 | 25.5 KiB | 1,047 | 947 |
| CodonToProtein.bf | H A D | 14-Oct-2021 | 4.9 KiB | 182 | 150 |
| ConvertDataFile.bf | H A D | 14-Oct-2021 | 2.2 KiB | 59 | 47 |
| DirectionalREL.bf | H A D | 14-Oct-2021 | 17.6 KiB | 593 | 480 |
| DistanceMatrix.bf | H A D | 14-Oct-2021 | 7.8 KiB | 313 | 268 |
| F_ST.bf | H A D | 14-Oct-2021 | 17.4 KiB | 645 | 527 |
| FitnessAAModels.bf | H A D | 14-Oct-2021 | 7.9 KiB | 341 | 297 |
| GARD.bf | H A D | 14-Oct-2021 | 48.8 KiB | 1,106 | 899 |
| GA_CHC.ibf | H A D | 14-Oct-2021 | 11.2 KiB | 459 | 417 |
| GA_CHC_Binary.ibf | H A D | 14-Oct-2021 | 14 KiB | 600 | 538 |
| Gateaux.bf | H A D | 14-Oct-2021 | 8.1 KiB | 333 | 276 |
| GateauxMR.bf | H A D | 14-Oct-2021 | 7.6 KiB | 329 | 271 |
| KHTest.bf | H A D | 14-Oct-2021 | 6.5 KiB | 267 | 220 |
| LEISR.bf | H A D | 14-Oct-2021 | 23.5 KiB | 494 | 355 |
| LHT.bf | H A D | 14-Oct-2021 | 6.4 KiB | 215 | 192 |
| LRTRecombTest.bf | H A D | 14-Oct-2021 | 7.6 KiB | 310 | 267 |
| LZ_Complexity.bf | H A D | 14-Oct-2021 | 1.9 KiB | 67 | 55 |
| LocalMolClock.bf | H A D | 14-Oct-2021 | 5 KiB | 201 | 159 |
| MGvsGY.bf | H A D | 14-Oct-2021 | 15.6 KiB | 641 | 562 |
| MergeSequences.bf | H A D | 14-Oct-2021 | 958 | 38 | 30 |
| MergeSites.bf | H A D | 14-Oct-2021 | 966 | 38 | 30 |
| ModelTest.bf | H A D | 14-Oct-2021 | 19.1 KiB | 726 | 602 |
| MolClockAllRoots.bf | H A D | 14-Oct-2021 | 5.6 KiB | 231 | 180 |
| MolecularClock.bf | H A D | 14-Oct-2021 | 3.2 KiB | 148 | 107 |
| NeighborJoining.bf | H A D | 14-Oct-2021 | 4.1 KiB | 190 | 150 |
| NielsenYang.bf | H A D | 14-Oct-2021 | 31.8 KiB | 1,234 | 1,104 |
| NucModelCompare.bf | H A D | 14-Oct-2021 | 24 KiB | 1,088 | 968 |
| PARRIS.bf | H A D | 14-Oct-2021 | 41.7 KiB | 1,428 | 1,279 |
| PairwiseRelativeRate.bf | H A D | 14-Oct-2021 | 7.3 KiB | 280 | 223 |
| PairwiseRelativeRatio.bf | H A D | 14-Oct-2021 | 9.6 KiB | 341 | 283 |
| PartitionDataFile.bf | H A D | 14-Oct-2021 | 1.8 KiB | 46 | 35 |
| ReduceDataSetMatrix.bf | H A D | 14-Oct-2021 | 8.9 KiB | 406 | 358 |
| RelativeRate.bf | H A D | 14-Oct-2021 | 3.4 KiB | 161 | 123 |
| RelativeRatio.bf | H A D | 14-Oct-2021 | 5.4 KiB | 259 | 200 |
| SGASimProcessor.bf | H A D | 14-Oct-2021 | 12.9 KiB | 550 | 463 |
| SGEmulator.bf | H A D | 14-Oct-2021 | 22.9 KiB | 922 | 789 |
| SGEmulator_MF.bf | H A D | 14-Oct-2021 | 19.1 KiB | 744 | 643 |
| SGIvL.bf | H A D | 14-Oct-2021 | 18.4 KiB | 759 | 648 |
| SM-2019.bf | H A D | 14-Oct-2021 | 12.5 KiB | 318 | 229 |
| SandNSAmbigs.bf | H A D | 14-Oct-2021 | 9.3 KiB | 458 | 372 |
| SelectionLRT.bf | H A D | 14-Oct-2021 | 10.6 KiB | 368 | 276 |
| SeqAlignShared.ibf | H A D | 14-Oct-2021 | 83 KiB | 784 | 686 |
| SeqAlignmentCodon.bf | H A D | 14-Oct-2021 | 169 | 8 | 4 |
| SeqAlignmentCodonShared.ibf | H A D | 14-Oct-2021 | 7.7 KiB | 213 | 173 |
| SeqAlignmentNucShared.ibf | H A D | 14-Oct-2021 | 7 KiB | 291 | 225 |
| SequentialAddition.bf | H A D | 14-Oct-2021 | 5.4 KiB | 166 | 123 |
| SequentialAddition.ibf | H A D | 14-Oct-2021 | 14.9 KiB | 617 | 553 |
| SimilarityPlot.bf | H A D | 14-Oct-2021 | 4.5 KiB | 168 | 136 |
| SimmondsAI.bf | H A D | 14-Oct-2021 | 7.6 KiB | 318 | 263 |
| SingleBreakpointRecomb.bf | H A D | 14-Oct-2021 | 28.7 KiB | 1,184 | 993 |
| SlidingWindowAnalysis.bf | H A D | 14-Oct-2021 | 6.3 KiB | 280 | 240 |
| TestBranchDNDS.bf | H A D | 14-Oct-2021 | 12 KiB | 447 | 369 |
| TestClade.bf | H A D | 14-Oct-2021 | 23.2 KiB | 1,069 | 946 |
| TestCladeMeans.bf | H A D | 14-Oct-2021 | 10.1 KiB | 421 | 343 |
| TopologySearch.bf | H A D | 14-Oct-2021 | 10.5 KiB | 499 | 436 |
| TopologySearchConstrained.bf | H A D | 14-Oct-2021 | 8.9 KiB | 411 | 358 |
| TreeCorrelationCoefficients.bf | H A D | 14-Oct-2021 | 7.8 KiB | 338 | 278 |
| TreeTools.ibf | H A D | 14-Oct-2021 | 20.2 KiB | 820 | 696 |
| UpperBound.bf | H A D | 14-Oct-2021 | 1.6 KiB | 64 | 51 |
| WANC.bf | H A D | 14-Oct-2021 | 9.1 KiB | 380 | 318 |
| YangNielsenBranchSite2005.bf | H A D | 14-Oct-2021 | 14.3 KiB | 496 | 409 |
| _BMS_Aux.ibf | H A D | 14-Oct-2021 | 4.4 KiB | 175 | 158 |
| _CMS_Aux.ibf | H A D | 14-Oct-2021 | 8.6 KiB | 345 | 309 |
| _MFReader_.ibf | H A D | 14-Oct-2021 | 6.8 KiB | 223 | 190 |
| _tipDater.ibf | H A D | 14-Oct-2021 | 1.8 KiB | 84 | 76 |
| bayesgraph.ibf | H A D | 14-Oct-2021 | 20 KiB | 846 | 691 |
| binomial.ibf | H A D | 14-Oct-2021 | 1.6 KiB | 90 | 77 |
| branchSwappingFunctions.bf | H A D | 14-Oct-2021 | 8.7 KiB | 412 | 384 |
| categoryEcho.bf | H A D | 14-Oct-2021 | 4.3 KiB | 170 | 161 |
| chooseDistanceFormula.def | H A D | 14-Oct-2021 | 3.9 KiB | 96 | 89 |
| dNdSBivariateRateAnalysis.bf | H A D | 14-Oct-2021 | 21.5 KiB | 828 | 685 |
| dNdSDistributionComparison.bf | H A D | 14-Oct-2021 | 28.6 KiB | 1,029 | 829 |
| dNdSRateAnalysis.bf | H A D | 14-Oct-2021 | 26.2 KiB | 981 | 848 |
| dNdSResultProcessor.bf | H A D | 14-Oct-2021 | 32.1 KiB | 1,243 | 1,079 |
| dSdNTreeTools.ibf | H A D | 14-Oct-2021 | 2.6 KiB | 105 | 87 |
| distanceMethodNPBootstrap.bf | H A D | 14-Oct-2021 | 9.5 KiB | 444 | 396 |
| distanceRMethodNPBootstrap.bf | H A D | 14-Oct-2021 | 7.7 KiB | 374 | 335 |
| doNNISwap.bf | H A D | 14-Oct-2021 | 3 KiB | 151 | 144 |
| doSPRSwap.bf | H A D | 14-Oct-2021 | 2.8 KiB | 134 | 130 |
| files.lst | H A D | 14-Oct-2021 | 11.7 KiB | 113 | 92 |
| globalChecker.ibf | H A D | 14-Oct-2021 | 511 | 27 | 25 |
| heuristicMethodNPBootstrap.bf | H A D | 14-Oct-2021 | 5.8 KiB | 274 | 255 |
| last.date | H A D | 14-Oct-2021 | 15 | 2 | 1 |
| molclockBootstrap.bf | H A D | 14-Oct-2021 | 5.9 KiB | 246 | 220 |
| pairwiseDistanceEstimator.ibf | H A D | 14-Oct-2021 | 10.3 KiB | 371 | 324 |
| pairwiseDistanceEstimatorCounter.ibf | H A D | 14-Oct-2021 | 180 | 11 | 10 |
| partitionSequences.ibf | H A D | 14-Oct-2021 | 1.6 KiB | 67 | 53 |
| posteriors.ibf | H A D | 14-Oct-2021 | 696 | 27 | 21 |
| qndhelper1.ibf | H A D | 14-Oct-2021 | 35.2 KiB | 1,231 | 1,059 |
| qndhelper1_mf.ibf | H A D | 14-Oct-2021 | 7.4 KiB | 311 | 266 |
| qndhelper2.ibf | H A D | 14-Oct-2021 | 13.2 KiB | 432 | 370 |
| qndhelper2_mf.ibf | H A D | 14-Oct-2021 | 13.8 KiB | 449 | 389 |
| qndhelper3.ibf | H A D | 14-Oct-2021 | 4.3 KiB | 150 | 145 |
| qndhelper4.ibf | H A D | 14-Oct-2021 | 4.3 KiB | 175 | 152 |
| queryTree.bf | H A D | 14-Oct-2021 | 2.8 KiB | 143 | 130 |
| readIndexFile.bf | H A D | 14-Oct-2021 | 448 | 22 | 18 |
| relative_nucleotide_rates.bf | H A D | 14-Oct-2021 | 12.3 KiB | 265 | 174 |
| relrateBootstrap.bf | H A D | 14-Oct-2021 | 9.9 KiB | 376 | 345 |
| relratioBootstrap.bf | H A D | 14-Oct-2021 | 4.4 KiB | 132 | 120 |
| selectModelParameters.bf | H A D | 14-Oct-2021 | 449 | 20 | 14 |
| simpleBootstrap.bf | H A D | 14-Oct-2021 | 9.7 KiB | 390 | 349 |