1files=(adh.nex bglobin.nex camelid.nex COXI.nex ENCenv.nex flavNS5.nex HepatitisD.nex HIV_RT.nex HIVvif.nex InfluenzaA.nex lysin.nex yokoyama.rh1.cds.mod.1-990.nex) 2codes=(Universal Universal Universal Vertebrate-mtDNA Universal Universal Universal Universal Universal Universal Universal Universal) 3 4HYPHY=$1 5 6for i in ${!files[@]}; do 7 FILE=${files[i]} 8 CODE=${codes[i]} 9 time $HYPHY meme --alignment $FILE --code $CODE --output ${FILE}.MEME.json 10done; 11