1--- 2abstract: 'BioPerl-Run - wrapper toolkit' 3author: 4 - 'BioPerl Team <bioperl-l@bioperl.org>' 5build_requires: 6 Bio::Root::Test: '0' 7 Bio::Root::Version: '1.007000' 8configure_requires: 9 Module::Build: '0.42' 10dynamic_config: 1 11generated_by: 'Module::Build version 0.4224, CPAN::Meta::Converter version 2.150005' 12license: perl 13meta-spec: 14 url: http://module-build.sourceforge.net/META-spec-v1.4.html 15 version: '1.4' 16name: BioPerl-Run 17provides: 18 Bio::DB::ESoap: 19 file: lib/Bio/DB/ESoap.pm 20 version: '1.007003' 21 Bio::DB::ESoap::WSDL: 22 file: lib/Bio/DB/ESoap/WSDL.pm 23 version: '1.007003' 24 Bio::DB::SoapEUtilities: 25 file: lib/Bio/DB/SoapEUtilities.pm 26 version: '1.007003' 27 Bio::DB::SoapEUtilities::DocSumAdaptor: 28 file: lib/Bio/DB/SoapEUtilities/DocSumAdaptor.pm 29 version: '1.007003' 30 Bio::DB::SoapEUtilities::DocSumAdaptor::docsum: 31 file: lib/Bio/DB/SoapEUtilities/DocSumAdaptor.pm 32 version: '1.007003' 33 Bio::DB::SoapEUtilities::FetchAdaptor: 34 file: lib/Bio/DB/SoapEUtilities/FetchAdaptor.pm 35 version: '1.007003' 36 Bio::DB::SoapEUtilities::FetchAdaptor::seq: 37 file: lib/Bio/DB/SoapEUtilities/FetchAdaptor/seq.pm 38 version: '1.007003' 39 Bio::DB::SoapEUtilities::FetchAdaptor::species: 40 file: lib/Bio/DB/SoapEUtilities/FetchAdaptor/species.pm 41 version: '1.007003' 42 Bio::DB::SoapEUtilities::GQueryAdaptor: 43 file: lib/Bio/DB/SoapEUtilities/GQueryAdaptor.pm 44 version: '1.007003' 45 Bio::DB::SoapEUtilities::GQueryAdaptor::gquery: 46 file: lib/Bio/DB/SoapEUtilities/GQueryAdaptor.pm 47 version: '1.007003' 48 Bio::DB::SoapEUtilities::LinkAdaptor: 49 file: lib/Bio/DB/SoapEUtilities/LinkAdaptor.pm 50 version: '1.007003' 51 Bio::DB::SoapEUtilities::LinkAdaptor::linkset: 52 file: lib/Bio/DB/SoapEUtilities/LinkAdaptor.pm 53 version: '1.007003' 54 Bio::DB::SoapEUtilities::Result: 55 file: lib/Bio/DB/SoapEUtilities/Result.pm 56 version: '1.007003' 57 Bio::Factory::EMBOSS: 58 file: lib/Bio/Factory/EMBOSS.pm 59 version: '1.007003' 60 Bio::Tools::Run::Alignment::Amap: 61 file: lib/Bio/Tools/Run/Alignment/Amap.pm 62 version: '1.007003' 63 Bio::Tools::Run::Alignment::Blat: 64 file: lib/Bio/Tools/Run/Alignment/Blat.pm 65 version: '1.007003' 66 Bio::Tools::Run::Alignment::DBA: 67 file: lib/Bio/Tools/Run/Alignment/DBA.pm 68 version: '1.007003' 69 Bio::Tools::Run::Alignment::Exonerate: 70 file: lib/Bio/Tools/Run/Alignment/Exonerate.pm 71 version: '1.007003' 72 Bio::Tools::Run::Alignment::Gmap: 73 file: lib/Bio/Tools/Run/Alignment/Gmap.pm 74 version: '1.007003' 75 Bio::Tools::Run::Alignment::Kalign: 76 file: lib/Bio/Tools/Run/Alignment/Kalign.pm 77 version: '1.007003' 78 Bio::Tools::Run::Alignment::Lagan: 79 file: lib/Bio/Tools/Run/Alignment/Lagan.pm 80 version: '1.007003' 81 Bio::Tools::Run::Alignment::MAFFT: 82 file: lib/Bio/Tools/Run/Alignment/MAFFT.pm 83 version: '1.007003' 84 Bio::Tools::Run::Alignment::MSAProbs: 85 file: lib/Bio/Tools/Run/Alignment/MSAProbs.pm 86 version: '1.007003' 87 Bio::Tools::Run::Alignment::Muscle: 88 file: lib/Bio/Tools/Run/Alignment/Muscle.pm 89 version: '1.007003' 90 Bio::Tools::Run::Alignment::Pal2Nal: 91 file: lib/Bio/Tools/Run/Alignment/Pal2Nal.pm 92 version: '1.007003' 93 Bio::Tools::Run::Alignment::Probalign: 94 file: lib/Bio/Tools/Run/Alignment/Probalign.pm 95 version: '1.007003' 96 Bio::Tools::Run::Alignment::Probcons: 97 file: lib/Bio/Tools/Run/Alignment/Probcons.pm 98 version: '1.007003' 99 Bio::Tools::Run::Alignment::Proda: 100 file: lib/Bio/Tools/Run/Alignment/Proda.pm 101 version: '1.007003' 102 Bio::Tools::Run::Alignment::Sim4: 103 file: lib/Bio/Tools/Run/Alignment/Sim4.pm 104 version: '1.007003' 105 Bio::Tools::Run::Alignment::StandAloneFasta: 106 file: lib/Bio/Tools/Run/Alignment/StandAloneFasta.pm 107 version: '1.007003' 108 Bio::Tools::Run::Analysis::Job::soap: 109 file: lib/Bio/Tools/Run/Analysis/soap.pm 110 version: '1.007003' 111 Bio::Tools::Run::Analysis::soap: 112 file: lib/Bio/Tools/Run/Analysis/soap.pm 113 version: '1.007003' 114 Bio::Tools::Run::AnalysisFactory::soap: 115 file: lib/Bio/Tools/Run/AnalysisFactory/soap.pm 116 version: '1.007003' 117 Bio::Tools::Run::BEDTools: 118 file: lib/Bio/Tools/Run/BEDTools.pm 119 version: '1.007003' 120 Bio::Tools::Run::BEDTools::Config: 121 file: lib/Bio/Tools/Run/BEDTools/Config.pm 122 version: '1.007003' 123 Bio::Tools::Run::BlastPlus: 124 file: lib/Bio/Tools/Run/BlastPlus.pm 125 version: '1.007003' 126 Bio::Tools::Run::BlastPlus::Config: 127 file: lib/Bio/Tools/Run/BlastPlus/Config.pm 128 version: '1.007003' 129 Bio::Tools::Run::Coil: 130 file: lib/Bio/Tools/Run/Coil.pm 131 version: '1.007003' 132 Bio::Tools::Run::EMBOSSApplication: 133 file: lib/Bio/Tools/Run/EMBOSSApplication.pm 134 version: '1.007003' 135 Bio::Tools::Run::EMBOSSacd: 136 file: lib/Bio/Tools/Run/EMBOSSacd.pm 137 version: '1.007003' 138 Bio::Tools::Run::ERPIN: 139 file: lib/Bio/Tools/Run/ERPIN.pm 140 version: '1.007003' 141 Bio::Tools::Run::Ensembl: 142 file: lib/Bio/Tools/Run/Ensembl.pm 143 version: '1.007003' 144 Bio::Tools::Run::Eponine: 145 file: lib/Bio/Tools/Run/Eponine.pm 146 version: '1.007003' 147 Bio::Tools::Run::FootPrinter: 148 file: lib/Bio/Tools/Run/FootPrinter.pm 149 version: '1.007003' 150 Bio::Tools::Run::Genemark: 151 file: lib/Bio/Tools/Run/Genemark.pm 152 version: '1.007003' 153 Bio::Tools::Run::Genewise: 154 file: lib/Bio/Tools/Run/Genewise.pm 155 version: '1.007003' 156 Bio::Tools::Run::Genscan: 157 file: lib/Bio/Tools/Run/Genscan.pm 158 version: '1.007003' 159 Bio::Tools::Run::Glimmer: 160 file: lib/Bio/Tools/Run/Glimmer.pm 161 version: '1.007003' 162 Bio::Tools::Run::Hmmer: 163 file: lib/Bio/Tools/Run/Hmmer.pm 164 version: '1.007003' 165 Bio::Tools::Run::Infernal: 166 file: lib/Bio/Tools/Run/Infernal.pm 167 version: '1.007003' 168 Bio::Tools::Run::MCS: 169 file: lib/Bio/Tools/Run/MCS.pm 170 version: '1.007003' 171 Bio::Tools::Run::Match: 172 file: lib/Bio/Tools/Run/Match.pm 173 version: '1.007003' 174 Bio::Tools::Run::Mdust: 175 file: lib/Bio/Tools/Run/Mdust.pm 176 version: '1.007003' 177 Bio::Tools::Run::Phylo::FastTree: 178 file: lib/Bio/Tools/Run/Phylo/FastTree.pm 179 version: '1.007003' 180 Bio::Tools::Run::Phylo::Gerp: 181 file: lib/Bio/Tools/Run/Phylo/Gerp.pm 182 version: '1.007003' 183 Bio::Tools::Run::Phylo::Hyphy::Base: 184 file: lib/Bio/Tools/Run/Phylo/Hyphy/Base.pm 185 version: '1.007003' 186 Bio::Tools::Run::Phylo::Hyphy::BatchFile: 187 file: lib/Bio/Tools/Run/Phylo/Hyphy/BatchFile.pm 188 version: '1.007003' 189 Bio::Tools::Run::Phylo::Hyphy::FEL: 190 file: lib/Bio/Tools/Run/Phylo/Hyphy/FEL.pm 191 version: '1.007003' 192 Bio::Tools::Run::Phylo::Hyphy::Modeltest: 193 file: lib/Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm 194 version: '1.007003' 195 Bio::Tools::Run::Phylo::Hyphy::REL: 196 file: lib/Bio/Tools/Run/Phylo/Hyphy/REL.pm 197 version: '1.007003' 198 Bio::Tools::Run::Phylo::Hyphy::SLAC: 199 file: lib/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm 200 version: '1.007003' 201 Bio::Tools::Run::Phylo::LVB: 202 file: lib/Bio/Tools/Run/Phylo/LVB.pm 203 version: '1.007003' 204 Bio::Tools::Run::Phylo::Molphy::ProtML: 205 file: lib/Bio/Tools/Run/Phylo/Molphy/ProtML.pm 206 version: '1.007003' 207 Bio::Tools::Run::Phylo::Njtree::Best: 208 file: lib/Bio/Tools/Run/Phylo/Njtree/Best.pm 209 version: '1.007003' 210 Bio::Tools::Run::Phylo::Phast::PhastCons: 211 file: lib/Bio/Tools/Run/Phylo/Phast/PhastCons.pm 212 version: '1.007003' 213 Bio::Tools::Run::Phylo::Phast::PhyloFit: 214 file: lib/Bio/Tools/Run/Phylo/Phast/PhyloFit.pm 215 version: '1.007003' 216 Bio::Tools::Run::Phylo::Phylip::Base: 217 file: lib/Bio/Tools/Run/Phylo/Phylip/Base.pm 218 version: '1.007003' 219 Bio::Tools::Run::Phylo::Phylip::Consense: 220 file: lib/Bio/Tools/Run/Phylo/Phylip/Consense.pm 221 version: '1.007003' 222 Bio::Tools::Run::Phylo::Phylip::DrawGram: 223 file: lib/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm 224 version: '1.007003' 225 Bio::Tools::Run::Phylo::Phylip::DrawTree: 226 file: lib/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm 227 version: '1.007003' 228 Bio::Tools::Run::Phylo::Phylip::Neighbor: 229 file: lib/Bio/Tools/Run/Phylo/Phylip/Neighbor.pm 230 version: '1.007003' 231 Bio::Tools::Run::Phylo::Phylip::PhylipConf: 232 file: lib/Bio/Tools/Run/Phylo/Phylip/PhylipConf.pm 233 version: '1.007003' 234 Bio::Tools::Run::Phylo::Phylip::ProtDist: 235 file: lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm 236 version: '1.007003' 237 Bio::Tools::Run::Phylo::Phylip::ProtPars: 238 file: lib/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm 239 version: '1.007003' 240 Bio::Tools::Run::Phylo::Phylip::SeqBoot: 241 file: lib/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm 242 version: '1.007003' 243 Bio::Tools::Run::Phylo::Phyml: 244 file: lib/Bio/Tools/Run/Phylo/Phyml.pm 245 version: '1.007003' 246 Bio::Tools::Run::Phylo::QuickTree: 247 file: lib/Bio/Tools/Run/Phylo/QuickTree.pm 248 version: '1.007003' 249 Bio::Tools::Run::Phylo::Raxml: 250 file: lib/Bio/Tools/Run/Phylo/Raxml.pm 251 version: '1.007003' 252 Bio::Tools::Run::Phylo::SLR: 253 file: lib/Bio/Tools/Run/Phylo/SLR.pm 254 version: '1.007003' 255 Bio::Tools::Run::Phylo::Semphy: 256 file: lib/Bio/Tools/Run/Phylo/Semphy.pm 257 version: '1.007003' 258 Bio::Tools::Run::Primate: 259 file: lib/Bio/Tools/Run/Primate.pm 260 version: '1.007003' 261 Bio::Tools::Run::Primer3: 262 file: lib/Bio/Tools/Run/Primer3.pm 263 version: '1.007003' 264 Bio::Tools::Run::Prints: 265 file: lib/Bio/Tools/Run/Prints.pm 266 version: '1.007003' 267 Bio::Tools::Run::Profile: 268 file: lib/Bio/Tools/Run/Profile.pm 269 version: '1.007003' 270 Bio::Tools::Run::Promoterwise: 271 file: lib/Bio/Tools/Run/Promoterwise.pm 272 version: '1.007003' 273 Bio::Tools::Run::Pseudowise: 274 file: lib/Bio/Tools/Run/Pseudowise.pm 275 version: '1.007003' 276 Bio::Tools::Run::RNAMotif: 277 file: lib/Bio/Tools/Run/RNAMotif.pm 278 version: '1.007003' 279 Bio::Tools::Run::RepeatMasker: 280 file: lib/Bio/Tools/Run/RepeatMasker.pm 281 version: '1.007003' 282 Bio::Tools::Run::Samtools: 283 file: lib/Bio/Tools/Run/Samtools.pm 284 version: '1.007003' 285 Bio::Tools::Run::Samtools::Config: 286 file: lib/Bio/Tools/Run/Samtools/Config.pm 287 version: '1.007003' 288 Bio::Tools::Run::Seg: 289 file: lib/Bio/Tools/Run/Seg.pm 290 version: '1.007003' 291 Bio::Tools::Run::Signalp: 292 file: lib/Bio/Tools/Run/Signalp.pm 293 version: '1.007003' 294 Bio::Tools::Run::Simprot: 295 file: lib/Bio/Tools/Run/Simprot.pm 296 version: '1.007003' 297 Bio::Tools::Run::StandAloneBlast: 298 file: lib/Bio/Tools/Run/StandAloneBlast.pm 299 version: '1.007003' 300 Bio::Tools::Run::StandAloneBlastPlus: 301 file: lib/Bio/Tools/Run/StandAloneBlastPlus.pm 302 version: '1.007003' 303 Bio::Tools::Run::StandAloneNCBIBlast: 304 file: lib/Bio/Tools/Run/StandAloneNCBIBlast.pm 305 version: '1.007003' 306 Bio::Tools::Run::StandAloneWUBlast: 307 file: lib/Bio/Tools/Run/StandAloneWUBlast.pm 308 version: '1.007003' 309 Bio::Tools::Run::Tmhmm: 310 file: lib/Bio/Tools/Run/Tmhmm.pm 311 version: '1.007003' 312 Bio::Tools::Run::TribeMCL: 313 file: lib/Bio/Tools/Run/TribeMCL.pm 314 version: '1.007003' 315 Bio::Tools::Run::Vista: 316 file: lib/Bio/Tools/Run/Vista.pm 317 version: '1.007003' 318 Bio::Tools::Run::tRNAscanSE: 319 file: lib/Bio/Tools/Run/tRNAscanSE.pm 320 version: '1.007003' 321recommends: 322 Algorithm::Diff: '0' 323 Bio::FeatureIO: '0' 324 Config::Any: '0' 325 File::Sort: '0' 326 IO::String: '0' 327 IPC::Run: '0' 328 XML::Twig: '0' 329requires: 330 Bio::Root::Root: '0' 331 Bio::Root::Version: '1.007000' 332 perl: v5.6.1 333resources: 334 license: http://dev.perl.org/licenses/ 335version: '1.007003' 336x_serialization_backend: 'CPAN::Meta::YAML version 0.018' 337