1 /* 2 3 PhyML: a program that computes maximum likelihood phylogenies from 4 DNA or AA homologous sequences. 5 6 Copyright (C) Stephane Guindon. Oct 2003 onward. 7 8 All parts of the source except where indicated are distributed under 9 the GNU public licence. See http://www.opensource.org for details. 10 11 */ 12 13 #include <config.h> 14 15 #ifndef RRW_H 16 #define RRW_H 17 18 #include "utilities.h" 19 20 phydbl RRW_Forward_Lk(t_tree *tree); 21 void RRW_Forward_Lk_Pre(t_node *a, t_node *d, phydbl *lnP, t_tree *tree); 22 phydbl RRW_Lk(t_tree *tree); 23 void RRW_Rescale_Times(int prod, t_tree *tree); 24 phydbl RRW_Prior_Sigsq_Scale(t_tree *tree); 25 void RRW_Rescale_Times_Pre(t_node *a, t_node *d, phydbl cur_ta, int prod, t_tree *tree); 26 27 #endif 28