1ProtoMol GNU GENERAL PUBLIC LICENSE
2
3This Software is copyrighted by the University of Notre Dame and the University
4of Bergen, Norway, whom grant you the right to use this software under
5the terms of the GNU General Public License. Although you are under no
6obligation, the ProtoMol devlopment team would appreciate the
7inclusion of the following citation in all research and development
8works which utilize this software:
9
10T. Matthey, T. Cickovski, S. Hampton, A. Ko, Q. Ma, T. Slabach
11and J. A. Izaguirre, 'ProtoMol, an Object-Oriented Framework for Prototyping
12Novel Algorithms for Molecular Dynamics', ACM Transactions on Mathematical
13Software, Vol 30(3), pp 237-265, 2004
14
15               GNU GENERAL PUBLIC LICENSE
16
17Version 2, June 1991
18
19Copyright c 1989, 1991 Free Software Foundation, Inc.
2059 Temple Place, Suite 330, Boston, MA 02111-1307 USA
21Everyone is permitted to copy and distribute verbatim copies of this license
22document, but changing it is not allowed.
23
24Preamble
25The licenses for most software are designed to take away your freedom to
26share and change it. By contrast, the GNU General Public License is in-
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30other program whose authors commit to using it. (Some other Free Software
31Foundation software is covered by the GNU Library General Public License
32instead.) You can apply it to your programs, too.
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65Terms and conditions for copying, distribution and
66modification
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982. You may modify your copy or copies of the Program or any portion
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225 8. If the distribution and/or use of the Program is restricted in certain
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233 9. The Free Software Foundation may publish revised and/or new ver-
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24510. If you wish to incorporate parts of the Program into other free pro-
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253                                NO WARRANTY
254
255 11. Because the Program is licensed free of charge, there is no
256     warranty for the Program, to the extent permitted by ap-
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266 12. In no event unless required by applicable law or agreed to
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278
279                  GNU Free Documentation License
280
281   Version 1.1, March 2000
282
283Copyright c
284             2000 Free Software Foundation, Inc.
28559 Temple Place, Suite 330, Boston, MA 02111-1307 USA
286Everyone is permitted to copy and distribute verbatim copies of this license
287document, but changing it is not allowed.
288
2890. Preamble
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3081. Applicability and Definitions
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4094. Modifications
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5005. Combining Documents
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519
5206. Collections of Documents
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5317. Aggregation with Independent Works
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535provided no compilation copyright is claimed for the compilation. Such a
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540   If the Cover Text requirement of section 3 is applicable to these copies
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5468. Translation
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556
5579. Termination
558You may not copy, modify, sublicense, or distribute the Document except
559as expressly provided for under this License. Any other attempt to copy,
560modify, sublicense or distribute the Document is void, and will automatically
561terminate your rights under this License. However, parties who have received
562copies, or rights, from you under this License will not have their licenses
563terminated so long as such parties remain in full compliance.
564
56510. Future Revisions of This License
566The Free Software Foundation may publish new, revised versions of the GNU
567Free Documentation License from time to time. Such new versions will be
568similar in spirit to the present version, but may differ in detail to address
569new problems or concerns. See http://www.gnu.org/copyleft/.
570   Each version of the License is given a distinguishing version number. If
571the Document specifies that a particular numbered version of this License
572"or any later version" applies to it, you have the option of following the
573terms and conditions either of that specified version or of any later version
574that has been published (not as a draft) by the Free Software Foundation.
575If the Document does not specify a version number of this License, you
576may choose any version ever published (not as a draft) by the Free Software
577Foundation.
578
579ADDENDUM: How to use this License for your
580documents
581To use this License in a document you have written, include a copy of the
582License in the document and put the following copyright and license notices
583just after the title page:
584
585Copyright (c) YEAR YOUR NAME.
586Permission is granted to copy, distribute and/or modify this document
587under the terms of the GNU Free Documentation License, Version 1.1
588or any later version published by the Free Software Foundation;
589with the Invariant Sections being LIST THEIR TITLES, with the
590Front-Cover Texts being LIST, and with the Back-Cover Texts being LIST.
591A copy of the license is included in the section entitled "GNU
592Free Documentation License".
593
594   If you have no Invariant Sections, write "with no Invariant Sections"
595instead of saying which ones are invariant. If you have no Front-Cover
596Texts, write "no Front-Cover Texts" instead of "Front-Cover Texts being
597LIST"; likewise for Back-Cover Texts.
598   If your document contains nontrivial examples of program code, we rec-
599ommend releasing these examples in parallel under your choice of free soft-
600ware license, such as the GNU General Public License, to permit their use
601in free software.
602