1<?xml version='1.0' encoding='UTF-8' standalone='yes'?> 2<!-- Document definition --> 3<!DOCTYPE MEME[ 4<!ELEMENT MEME ( 5 training_set, 6 model, 7 motifs, 8 scanned_sites_summary? 9)> 10<!ATTLIST MEME 11 version CDATA #REQUIRED 12 release CDATA #REQUIRED 13> 14<!-- Training-set elements --> 15<!ELEMENT training_set (alphabet, ambigs, sequence*, letter_frequencies)> 16<!ATTLIST training_set primary_sequences CDATA #REQUIRED primary_count CDATA #REQUIRED primary_positions CDATA #REQUIRED 17 control_sequences CDATA "" control_count CDATA "" control_positions CDATA ""> 18<!ELEMENT alphabet (letter*)> 19<!ATTLIST alphabet name CDATA #REQUIRED> 20<!ELEMENT ambigs (letter*)> 21<!ELEMENT letter EMPTY> 22<!ATTLIST letter id ID #REQUIRED> 23<!ATTLIST letter symbol CDATA #REQUIRED> 24<!ATTLIST letter equals CDATA #IMPLIED> 25<!ATTLIST letter aliases CDATA #IMPLIED> 26<!ATTLIST letter complement CDATA #IMPLIED> 27<!ATTLIST letter name CDATA #IMPLIED> 28<!ATTLIST letter colour CDATA #IMPLIED> 29<!ELEMENT sequence EMPTY> 30<!ATTLIST sequence id ID #REQUIRED 31 name CDATA #REQUIRED 32 length CDATA #REQUIRED 33 weight CDATA #REQUIRED 34> 35<!ELEMENT letter_frequencies (alphabet_array)> 36 37<!-- Model elements --> 38<!ELEMENT model ( 39 command_line, 40 host, 41 type, 42 nmotifs, 43 evalue_threshold, 44 object_function, 45 spfun, 46 min_width, 47 max_width, 48 wg, 49 ws, 50 endgaps, 51 minsites, 52 maxsites, 53 wnsites, 54 spmap, 55 spfuzz, 56 prior, 57 beta, 58 maxiter, 59 distance, 60 num_positions, 61 seed, 62 hsfrac, 63 searchsize, 64 maxsize, 65 norand, 66 csites, 67 strands, 68 brief, 69 psp_file, 70 priors_file, 71 reason_for_stopping, 72 background_frequencies 73)> 74<!ELEMENT command_line (#PCDATA)*> 75<!ELEMENT host (#PCDATA)*> 76<!ELEMENT type (#PCDATA)*> 77<!ELEMENT nmotifs (#PCDATA)*> 78<!ELEMENT evalue_threshold (#PCDATA)*> 79<!ELEMENT object_function (#PCDATA)*> 80<!ELEMENT spfun (#PCDATA)*> 81<!ELEMENT min_width (#PCDATA)*> 82<!ELEMENT max_width (#PCDATA)*> 83<!ELEMENT wg (#PCDATA)*> 84<!ELEMENT ws (#PCDATA)*> 85<!ELEMENT endgaps (#PCDATA)*> 86<!ELEMENT minsites (#PCDATA)*> 87<!ELEMENT maxsites (#PCDATA)*> 88<!ELEMENT wnsites (#PCDATA)*> 89<!ELEMENT spmap (#PCDATA)*> 90<!ELEMENT spfuzz (#PCDATA)*> 91<!ELEMENT prior (#PCDATA)*> 92<!ELEMENT beta (#PCDATA)*> 93<!ELEMENT maxiter (#PCDATA)*> 94<!ELEMENT distance (#PCDATA)*> 95<!ELEMENT num_positions (#PCDATA)*> 96<!ELEMENT seed (#PCDATA)*> 97<!ELEMENT hsfrac (#PCDATA)*> 98<!ELEMENT searchsize (#PCDATA)*> 99<!ELEMENT maxsize (#PCDATA)*> 100<!ELEMENT norand (#PCDATA)*> 101<!ELEMENT csites (#PCDATA)*> 102<!ELEMENT strands (#PCDATA)*> 103<!ELEMENT brief (#PCDATA)*> 104<!ELEMENT psp_file (#PCDATA)*> 105<!ELEMENT priors_file (#PCDATA)*> 106<!ELEMENT reason_for_stopping (#PCDATA)*> 107<!ELEMENT background_frequencies (alphabet_array)> 108<!ATTLIST background_frequencies source CDATA #REQUIRED 109 order CDATA #REQUIRED> 110 111<!-- Motif elements --> 112<!ELEMENT motifs (motif*)> 113<!ELEMENT motif (scores, probabilities, regular_expression?, contributing_sites)> 114<!ATTLIST motif id ID #REQUIRED 115 name CDATA #REQUIRED 116 alt CDATA "" 117 width CDATA #REQUIRED 118 sites CDATA #REQUIRED 119 ic CDATA #REQUIRED 120 re CDATA #REQUIRED 121 llr CDATA #REQUIRED 122 p_value CDATA #REQUIRED 123 e_value CDATA #REQUIRED 124 bayes_threshold CDATA #REQUIRED 125 elapsed_time CDATA #REQUIRED 126 url CDATA "" 127> 128<!ELEMENT scores (alphabet_matrix)> 129<!ELEMENT probabilities (alphabet_matrix)> 130<!ELEMENT regular_expression (#PCDATA)*> 131 132<!-- Contributing site elements --> 133<!-- Contributing sites are motif occurences found during the motif discovery phase --> 134<!ELEMENT contributing_sites (contributing_site*)> 135<!ELEMENT contributing_site (left_flank, site, right_flank)> 136<!ATTLIST contributing_site sequence_id IDREF #REQUIRED 137 position CDATA #REQUIRED 138 strand (plus|minus|none) 'none' 139 pvalue CDATA #REQUIRED 140> 141<!-- The left_flank contains the sequence for 10 bases to the left of the motif start --> 142<!ELEMENT left_flank (#PCDATA)> 143<!-- The site contains the sequence for the motif instance --> 144<!ELEMENT site (letter_ref*)> 145<!-- The right_flank contains the sequence for 10 bases to the right of the motif end --> 146<!ELEMENT right_flank (#PCDATA)> 147 148<!-- Scanned site elements --> 149<!-- Scanned sites are motif occurences found during the sequence scan phase --> 150<!ELEMENT scanned_sites_summary (scanned_sites*)> 151<!ATTLIST scanned_sites_summary p_thresh CDATA #REQUIRED> 152<!ELEMENT scanned_sites (scanned_site*)> 153<!ATTLIST scanned_sites sequence_id IDREF #REQUIRED 154 pvalue CDATA #REQUIRED 155 num_sites CDATA #REQUIRED> 156<!ELEMENT scanned_site EMPTY> 157<!ATTLIST scanned_site motif_id IDREF #REQUIRED 158 strand (plus|minus|none) 'none' 159 position CDATA #REQUIRED 160 pvalue CDATA #REQUIRED> 161 162<!-- Utility elements --> 163<!-- A reference to a letter in the alphabet --> 164<!ELEMENT letter_ref EMPTY> 165<!ATTLIST letter_ref letter_id IDREF #REQUIRED> 166<!-- A alphabet-array contains one floating point value for each letter in an alphabet --> 167<!ELEMENT alphabet_array (value*)> 168<!ELEMENT value (#PCDATA)> 169<!ATTLIST value letter_id IDREF #REQUIRED> 170 171<!-- A alphabet_matrix contains one alphabet_array for each position in a motif --> 172<!ELEMENT alphabet_matrix (alphabet_array*)> 173 174]> 175<!-- Begin document body --> 176<MEME version="5.0.1" release="Wed Aug 22 15:26:53 2018 -0700"> 177<training_set primary_sequences="common/psp_test.s" primary_count="17" primary_positions="11915" control_sequences="--none--" control_count="0" control_positions="0"> 178<alphabet name="DNA" like="dna"> 179<letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/> 180<letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/> 181<letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/> 182<letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/> 183<letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/> 184<letter id="V" symbol="V" equals="ACG" name="Not T"/> 185<letter id="H" symbol="H" equals="ACT" name="Not G"/> 186<letter id="D" symbol="D" equals="AGT" name="Not C"/> 187<letter id="B" symbol="B" equals="CGT" name="Not A"/> 188<letter id="M" symbol="M" equals="AC" name="Amino"/> 189<letter id="R" symbol="R" equals="AG" name="Purine"/> 190<letter id="W" symbol="W" equals="AT" name="Weak"/> 191<letter id="S" symbol="S" equals="CG" name="Strong"/> 192<letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/> 193<letter id="K" symbol="K" equals="GT" name="Keto"/> 194</alphabet> 195<sequence id="sequence_0" name="iYBL030C-1" length="1083" weight="1.000000" /> 196<sequence id="sequence_1" name="iYBR008C" length="1180" weight="1.000000" /> 197<sequence id="sequence_2" name="iYBR076W" length="401" weight="1.000000" /> 198<sequence id="sequence_3" name="iYBR208C" length="396" weight="1.000000" /> 199<sequence id="sequence_4" name="iYCR021C" length="325" weight="1.000000" /> 200<sequence id="sequence_5" name="iYDL037C-0" length="954" weight="1.000000" /> 201<sequence id="sequence_6" name="iYDL037C-1" length="922" weight="1.000000" /> 202<sequence id="sequence_7" name="iYDR300C" length="586" weight="1.000000" /> 203<sequence id="sequence_8" name="iYDR338C" length="463" weight="1.000000" /> 204<sequence id="sequence_9" name="iYDR441C" length="570" weight="1.000000" /> 205<sequence id="sequence_10" name="iYDR505C" length="508" weight="1.000000" /> 206<sequence id="sequence_11" name="iYEL012W" length="584" weight="1.000000" /> 207<sequence id="sequence_12" name="iYER028C" length="676" weight="1.000000" /> 208<sequence id="sequence_13" name="iYER045C-0" length="835" weight="1.000000" /> 209<sequence id="sequence_14" name="iYER072W" length="844" weight="1.000000" /> 210<sequence id="sequence_15" name="iYFL005W" length="854" weight="1.000000" /> 211<sequence id="sequence_16" name="iYGR035C" length="734" weight="1.000000" /> 212<letter_frequencies> 213<alphabet_array> 214<value letter_id="A">0.317</value> 215<value letter_id="C">0.183</value> 216<value letter_id="G">0.183</value> 217<value letter_id="T">0.317</value> 218</alphabet_array> 219</letter_frequencies> 220</training_set> 221<model> 222<command_line>meme common/psp_test.s -oc results/meme50 -psp common/psp_test.psp -minsites 5 -dna -revcomp -minw 7 -maxw 12 -nostatus -searchsize 0 </command_line> 223<host>Timothys-iMac.rd.unr.edu</host> 224<type>zoops</type> 225<nmotifs>1</nmotifs> 226<evalue_threshold>inf</evalue_threshold> 227<object_function>E-value of product of p-values</object_function> 228<spfun>E-value of product of p-values</spfun> 229<min_width>7</min_width> 230<max_width>12</max_width> 231<wg>11</wg> 232<ws>1</ws> 233<endgaps>yes</endgaps> 234<substring>yes</substring> 235<minsites>5</minsites> 236<maxsites>17</maxsites> 237<wnsites>0.8</wnsites> 238<spmap>uni</spmap> 239<spfuzz>0.5</spfuzz> 240<prior>dirichlet</prior> 241<beta>0.01</beta> 242<maxiter>50</maxiter> 243<distance>1e-05</distance> 244<num_positions>11915</num_positions> 245<seed>0</seed> 246<hsfrac>0</hsfrac> 247<searchsize>11915</searchsize> 248<maxsize>0</maxsize> 249<norand>no</norand> 250<csites>1000</csites> 251<strands>both</strands> 252<brief>1000</brief> 253<psp_file>psp_test.psp</psp_file> 254<priors_file></priors_file> 255<reason_for_stopping>Stopped because requested number of motifs (1) found.</reason_for_stopping> 256<background_frequencies source="--sequences--" order="0"> 257<alphabet_array> 258<value letter_id="A">0.317</value> 259<value letter_id="C">0.183</value> 260<value letter_id="G">0.183</value> 261<value letter_id="T">0.317</value> 262</alphabet_array> 263</background_frequencies> 264</model> 265<motifs> 266<motif id="motif_1" name="GCTTATGTAA" alt="MEME-1" width="10" sites="16" ic="13.8" re="13.2" llr="146" p_value="1.3e-045" e_value="2.8e+006" bayes_threshold="10.035" elapsed_time="0.700636"> 267<scores> 268<alphabet_matrix> 269<alphabet_array> 270<value letter_id="A">-1064</value> 271<value letter_id="C">-1064</value> 272<value letter_id="G">245</value> 273<value letter_id="T">-1064</value> 274</alphabet_array> 275<alphabet_array> 276<value letter_id="A">-1064</value> 277<value letter_id="C">215</value> 278<value letter_id="G">-155</value> 279<value letter_id="T">-134</value> 280</alphabet_array> 281<alphabet_array> 282<value letter_id="A">-1064</value> 283<value letter_id="C">-1064</value> 284<value letter_id="G">-1064</value> 285<value letter_id="T">166</value> 286</alphabet_array> 287<alphabet_array> 288<value letter_id="A">-1064</value> 289<value letter_id="C">-1064</value> 290<value letter_id="G">-55</value> 291<value letter_id="T">146</value> 292</alphabet_array> 293<alphabet_array> 294<value letter_id="A">156</value> 295<value letter_id="C">-1064</value> 296<value letter_id="G">-1064</value> 297<value letter_id="T">-234</value> 298</alphabet_array> 299<alphabet_array> 300<value letter_id="A">-234</value> 301<value letter_id="C">4</value> 302<value letter_id="G">4</value> 303<value letter_id="T">83</value> 304</alphabet_array> 305<alphabet_array> 306<value letter_id="A">-134</value> 307<value letter_id="C">-155</value> 308<value letter_id="G">204</value> 309<value letter_id="T">-234</value> 310</alphabet_array> 311<alphabet_array> 312<value letter_id="A">-1064</value> 313<value letter_id="C">-1064</value> 314<value letter_id="G">45</value> 315<value letter_id="T">124</value> 316</alphabet_array> 317<alphabet_array> 318<value letter_id="A">136</value> 319<value letter_id="C">-55</value> 320<value letter_id="G">-1064</value> 321<value letter_id="T">-234</value> 322</alphabet_array> 323<alphabet_array> 324<value letter_id="A">166</value> 325<value letter_id="C">-1064</value> 326<value letter_id="G">-1064</value> 327<value letter_id="T">-1064</value> 328</alphabet_array> 329</alphabet_matrix> 330</scores> 331<probabilities> 332<alphabet_matrix> 333<alphabet_array> 334<value letter_id="A">0.000000</value> 335<value letter_id="C">0.000000</value> 336<value letter_id="G">1.000000</value> 337<value letter_id="T">0.000000</value> 338</alphabet_array> 339<alphabet_array> 340<value letter_id="A">0.000000</value> 341<value letter_id="C">0.812500</value> 342<value letter_id="G">0.062500</value> 343<value letter_id="T">0.125000</value> 344</alphabet_array> 345<alphabet_array> 346<value letter_id="A">0.000000</value> 347<value letter_id="C">0.000000</value> 348<value letter_id="G">0.000000</value> 349<value letter_id="T">1.000000</value> 350</alphabet_array> 351<alphabet_array> 352<value letter_id="A">0.000000</value> 353<value letter_id="C">0.000000</value> 354<value letter_id="G">0.125000</value> 355<value letter_id="T">0.875000</value> 356</alphabet_array> 357<alphabet_array> 358<value letter_id="A">0.937500</value> 359<value letter_id="C">0.000000</value> 360<value letter_id="G">0.000000</value> 361<value letter_id="T">0.062500</value> 362</alphabet_array> 363<alphabet_array> 364<value letter_id="A">0.062500</value> 365<value letter_id="C">0.187500</value> 366<value letter_id="G">0.187500</value> 367<value letter_id="T">0.562500</value> 368</alphabet_array> 369<alphabet_array> 370<value letter_id="A">0.125000</value> 371<value letter_id="C">0.062500</value> 372<value letter_id="G">0.750000</value> 373<value letter_id="T">0.062500</value> 374</alphabet_array> 375<alphabet_array> 376<value letter_id="A">0.000000</value> 377<value letter_id="C">0.000000</value> 378<value letter_id="G">0.250000</value> 379<value letter_id="T">0.750000</value> 380</alphabet_array> 381<alphabet_array> 382<value letter_id="A">0.812500</value> 383<value letter_id="C">0.125000</value> 384<value letter_id="G">0.000000</value> 385<value letter_id="T">0.062500</value> 386</alphabet_array> 387<alphabet_array> 388<value letter_id="A">1.000000</value> 389<value letter_id="C">0.000000</value> 390<value letter_id="G">0.000000</value> 391<value letter_id="T">0.000000</value> 392</alphabet_array> 393</alphabet_matrix> 394</probabilities> 395<regular_expression> 396GCTTATG[TG]AA 397</regular_expression> 398<contributing_sites> 399<contributing_site sequence_id="sequence_15" position="479" strand="plus" pvalue="1.97e-06" > 400<left_flank>AACTACTTGC</left_flank> 401<site> 402<letter_ref letter_id="G"/> 403<letter_ref letter_id="C"/> 404<letter_ref letter_id="T"/> 405<letter_ref letter_id="T"/> 406<letter_ref letter_id="A"/> 407<letter_ref letter_id="T"/> 408<letter_ref letter_id="G"/> 409<letter_ref letter_id="T"/> 410<letter_ref letter_id="A"/> 411<letter_ref letter_id="A"/> 412</site> 413<right_flank>GGTTCCTGTA</right_flank> 414</contributing_site> 415<contributing_site sequence_id="sequence_8" position="103" strand="plus" pvalue="1.97e-06" > 416<left_flank>AAATATGCTT</left_flank> 417<site> 418<letter_ref letter_id="G"/> 419<letter_ref letter_id="C"/> 420<letter_ref letter_id="T"/> 421<letter_ref letter_id="T"/> 422<letter_ref letter_id="A"/> 423<letter_ref letter_id="T"/> 424<letter_ref letter_id="G"/> 425<letter_ref letter_id="T"/> 426<letter_ref letter_id="A"/> 427<letter_ref letter_id="A"/> 428</site> 429<right_flank>AAATACAATC</right_flank> 430</contributing_site> 431<contributing_site sequence_id="sequence_2" position="269" strand="plus" pvalue="1.97e-06" > 432<left_flank>GCGTAATCAA</left_flank> 433<site> 434<letter_ref letter_id="G"/> 435<letter_ref letter_id="C"/> 436<letter_ref letter_id="T"/> 437<letter_ref letter_id="T"/> 438<letter_ref letter_id="A"/> 439<letter_ref letter_id="T"/> 440<letter_ref letter_id="G"/> 441<letter_ref letter_id="T"/> 442<letter_ref letter_id="A"/> 443<letter_ref letter_id="A"/> 444</site> 445<right_flank>ATGGCGTGTC</right_flank> 446</contributing_site> 447<contributing_site sequence_id="sequence_1" position="237" strand="minus" pvalue="5.39e-06" > 448<left_flank>AAGGATATTT</left_flank> 449<site> 450<letter_ref letter_id="G"/> 451<letter_ref letter_id="C"/> 452<letter_ref letter_id="T"/> 453<letter_ref letter_id="T"/> 454<letter_ref letter_id="A"/> 455<letter_ref letter_id="G"/> 456<letter_ref letter_id="G"/> 457<letter_ref letter_id="T"/> 458<letter_ref letter_id="A"/> 459<letter_ref letter_id="A"/> 460</site> 461<right_flank>GGAGCAATAA</right_flank> 462</contributing_site> 463<contributing_site sequence_id="sequence_7" position="143" strand="plus" pvalue="8.98e-06" > 464<left_flank>GCATTAGTTC</left_flank> 465<site> 466<letter_ref letter_id="G"/> 467<letter_ref letter_id="C"/> 468<letter_ref letter_id="T"/> 469<letter_ref letter_id="G"/> 470<letter_ref letter_id="A"/> 471<letter_ref letter_id="T"/> 472<letter_ref letter_id="G"/> 473<letter_ref letter_id="T"/> 474<letter_ref letter_id="A"/> 475<letter_ref letter_id="A"/> 476</site> 477<right_flank>TTTTTCATTT</right_flank> 478</contributing_site> 479<contributing_site sequence_id="sequence_6" position="151" strand="minus" pvalue="8.98e-06" > 480<left_flank>TTTAAACTTT</left_flank> 481<site> 482<letter_ref letter_id="G"/> 483<letter_ref letter_id="C"/> 484<letter_ref letter_id="T"/> 485<letter_ref letter_id="T"/> 486<letter_ref letter_id="A"/> 487<letter_ref letter_id="T"/> 488<letter_ref letter_id="G"/> 489<letter_ref letter_id="T"/> 490<letter_ref letter_id="C"/> 491<letter_ref letter_id="A"/> 492</site> 493<right_flank>AATTTAAATT</right_flank> 494</contributing_site> 495<contributing_site sequence_id="sequence_14" position="673" strand="minus" pvalue="1.83e-05" > 496<left_flank>TTTACATGGG</left_flank> 497<site> 498<letter_ref letter_id="G"/> 499<letter_ref letter_id="C"/> 500<letter_ref letter_id="T"/> 501<letter_ref letter_id="T"/> 502<letter_ref letter_id="A"/> 503<letter_ref letter_id="T"/> 504<letter_ref letter_id="A"/> 505<letter_ref letter_id="T"/> 506<letter_ref letter_id="A"/> 507<letter_ref letter_id="A"/> 508</site> 509<right_flank>TCGTGTTTTG</right_flank> 510</contributing_site> 511<contributing_site sequence_id="sequence_10" position="422" strand="minus" pvalue="2.32e-05" > 512<left_flank>AACCCGCAAA</left_flank> 513<site> 514<letter_ref letter_id="G"/> 515<letter_ref letter_id="C"/> 516<letter_ref letter_id="T"/> 517<letter_ref letter_id="G"/> 518<letter_ref letter_id="A"/> 519<letter_ref letter_id="C"/> 520<letter_ref letter_id="G"/> 521<letter_ref letter_id="G"/> 522<letter_ref letter_id="A"/> 523<letter_ref letter_id="A"/> 524</site> 525<right_flank>AAAGTATCGG</right_flank> 526</contributing_site> 527<contributing_site sequence_id="sequence_9" position="293" strand="minus" pvalue="2.91e-05" > 528<left_flank>CTCCGTATAA</left_flank> 529<site> 530<letter_ref letter_id="G"/> 531<letter_ref letter_id="G"/> 532<letter_ref letter_id="T"/> 533<letter_ref letter_id="T"/> 534<letter_ref letter_id="A"/> 535<letter_ref letter_id="T"/> 536<letter_ref letter_id="G"/> 537<letter_ref letter_id="T"/> 538<letter_ref letter_id="A"/> 539<letter_ref letter_id="A"/> 540</site> 541<right_flank>TCGGAAGTCG</right_flank> 542</contributing_site> 543<contributing_site sequence_id="sequence_16" position="258" strand="minus" pvalue="3.29e-05" > 544<left_flank>TTGTGAAAAA</left_flank> 545<site> 546<letter_ref letter_id="G"/> 547<letter_ref letter_id="C"/> 548<letter_ref letter_id="T"/> 549<letter_ref letter_id="T"/> 550<letter_ref letter_id="A"/> 551<letter_ref letter_id="A"/> 552<letter_ref letter_id="G"/> 553<letter_ref letter_id="G"/> 554<letter_ref letter_id="A"/> 555<letter_ref letter_id="A"/> 556</site> 557<right_flank>AGCCGCGGAT</right_flank> 558</contributing_site> 559<contributing_site sequence_id="sequence_12" position="579" strand="plus" pvalue="4.47e-05" > 560<left_flank>TTAAAATTAT</left_flank> 561<site> 562<letter_ref letter_id="G"/> 563<letter_ref letter_id="T"/> 564<letter_ref letter_id="T"/> 565<letter_ref letter_id="T"/> 566<letter_ref letter_id="A"/> 567<letter_ref letter_id="G"/> 568<letter_ref letter_id="G"/> 569<letter_ref letter_id="T"/> 570<letter_ref letter_id="A"/> 571<letter_ref letter_id="A"/> 572</site> 573<right_flank>TGAAAAAATA</right_flank> 574</contributing_site> 575<contributing_site sequence_id="sequence_3" position="179" strand="plus" pvalue="5.16e-05" > 576<left_flank>GAAAAAAAAA</left_flank> 577<site> 578<letter_ref letter_id="G"/> 579<letter_ref letter_id="C"/> 580<letter_ref letter_id="T"/> 581<letter_ref letter_id="T"/> 582<letter_ref letter_id="A"/> 583<letter_ref letter_id="G"/> 584<letter_ref letter_id="C"/> 585<letter_ref letter_id="T"/> 586<letter_ref letter_id="A"/> 587<letter_ref letter_id="A"/> 588</site> 589<right_flank>GAGAGCCTGA</right_flank> 590</contributing_site> 591<contributing_site sequence_id="sequence_0" position="277" strand="minus" pvalue="5.84e-05" > 592<left_flank>TTGTATGTGG</left_flank> 593<site> 594<letter_ref letter_id="G"/> 595<letter_ref letter_id="C"/> 596<letter_ref letter_id="T"/> 597<letter_ref letter_id="T"/> 598<letter_ref letter_id="A"/> 599<letter_ref letter_id="T"/> 600<letter_ref letter_id="G"/> 601<letter_ref letter_id="G"/> 602<letter_ref letter_id="T"/> 603<letter_ref letter_id="A"/> 604</site> 605<right_flank>TGCCTGCAGG</right_flank> 606</contributing_site> 607<contributing_site sequence_id="sequence_5" position="337" strand="minus" pvalue="6.52e-05" > 608<left_flank>CCGATTCTAT</left_flank> 609<site> 610<letter_ref letter_id="G"/> 611<letter_ref letter_id="C"/> 612<letter_ref letter_id="T"/> 613<letter_ref letter_id="T"/> 614<letter_ref letter_id="A"/> 615<letter_ref letter_id="C"/> 616<letter_ref letter_id="A"/> 617<letter_ref letter_id="G"/> 618<letter_ref letter_id="A"/> 619<letter_ref letter_id="A"/> 620</site> 621<right_flank>TAACCGATAC</right_flank> 622</contributing_site> 623<contributing_site sequence_id="sequence_13" position="633" strand="plus" pvalue="1.77e-04" > 624<left_flank>GCCTTGTTCT</left_flank> 625<site> 626<letter_ref letter_id="G"/> 627<letter_ref letter_id="C"/> 628<letter_ref letter_id="T"/> 629<letter_ref letter_id="T"/> 630<letter_ref letter_id="A"/> 631<letter_ref letter_id="C"/> 632<letter_ref letter_id="T"/> 633<letter_ref letter_id="T"/> 634<letter_ref letter_id="C"/> 635<letter_ref letter_id="A"/> 636</site> 637<right_flank>TGCAGAGGTA</right_flank> 638</contributing_site> 639<contributing_site sequence_id="sequence_4" position="71" strand="plus" pvalue="2.00e-04" > 640<left_flank>TTGTTGTTTT</left_flank> 641<site> 642<letter_ref letter_id="G"/> 643<letter_ref letter_id="T"/> 644<letter_ref letter_id="T"/> 645<letter_ref letter_id="T"/> 646<letter_ref letter_id="T"/> 647<letter_ref letter_id="T"/> 648<letter_ref letter_id="G"/> 649<letter_ref letter_id="T"/> 650<letter_ref letter_id="A"/> 651<letter_ref letter_id="A"/> 652</site> 653<right_flank>TTATAAATAA</right_flank> 654</contributing_site> 655</contributing_sites> 656</motif> 657</motifs> 658<scanned_sites_summary p_thresh="0.0001"> 659<scanned_sites sequence_id="sequence_0" pvalue="1.18e-01" num_sites="1"><scanned_site motif_id="motif_1" strand="minus" position="277" pvalue="5.84e-05"/> 660</scanned_sites> 661<scanned_sites sequence_id="sequence_1" pvalue="1.25e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="minus" position="237" pvalue="5.39e-06"/> 662</scanned_sites> 663<scanned_sites sequence_id="sequence_2" pvalue="1.54e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="269" pvalue="1.97e-06"/> 664</scanned_sites> 665<scanned_sites sequence_id="sequence_3" pvalue="3.91e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="179" pvalue="5.16e-05"/> 666</scanned_sites> 667<scanned_sites sequence_id="sequence_4" pvalue="1.19e-01" num_sites="0"></scanned_sites> 668<scanned_sites sequence_id="sequence_5" pvalue="1.16e-01" num_sites="1"><scanned_site motif_id="motif_1" strand="minus" position="337" pvalue="6.52e-05"/> 669</scanned_sites> 670<scanned_sites sequence_id="sequence_6" pvalue="1.63e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="minus" position="151" pvalue="8.98e-06"/> 671</scanned_sites> 672<scanned_sites sequence_id="sequence_7" pvalue="1.03e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="143" pvalue="8.98e-06"/> 673</scanned_sites> 674<scanned_sites sequence_id="sequence_8" pvalue="1.79e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="103" pvalue="1.97e-06"/> 675</scanned_sites> 676<scanned_sites sequence_id="sequence_9" pvalue="3.22e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="minus" position="293" pvalue="2.91e-05"/> 677</scanned_sites> 678<scanned_sites sequence_id="sequence_10" pvalue="2.29e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="minus" position="422" pvalue="2.32e-05"/> 679</scanned_sites> 680<scanned_sites sequence_id="sequence_11" pvalue="8.65e-01" num_sites="0"></scanned_sites> 681<scanned_sites sequence_id="sequence_12" pvalue="5.79e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="579" pvalue="4.47e-05"/> 682</scanned_sites> 683<scanned_sites sequence_id="sequence_13" pvalue="2.54e-01" num_sites="0"></scanned_sites> 684<scanned_sites sequence_id="sequence_14" pvalue="3.01e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="minus" position="673" pvalue="1.83e-05"/> 685</scanned_sites> 686<scanned_sites sequence_id="sequence_15" pvalue="3.33e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="479" pvalue="1.97e-06"/> 687</scanned_sites> 688<scanned_sites sequence_id="sequence_16" pvalue="4.66e-02" num_sites="2"><scanned_site motif_id="motif_1" strand="plus" position="215" pvalue="6.30e-05"/> 689<scanned_site motif_id="motif_1" strand="minus" position="258" pvalue="3.29e-05"/> 690</scanned_sites> 691</scanned_sites_summary> 692</MEME> 693