1 /**
2 * \file addModelHistory.cpp
3 * \brief adds Model History to a model
4 * \author Sarah Keating
5 *
6 * <!--------------------------------------------------------------------------
7 * This sample program is distributed under a different license than the rest
8 * of libSBML. This program uses the open-source MIT license, as follows:
9 *
10 * Copyright (c) 2013-2018 by the California Institute of Technology
11 * (California, USA), the European Bioinformatics Institute (EMBL-EBI, UK)
12 * and the University of Heidelberg (Germany), with support from the National
13 * Institutes of Health (USA) under grant R01GM070923. All rights reserved.
14 *
15 * Permission is hereby granted, free of charge, to any person obtaining a
16 * copy of this software and associated documentation files (the "Software"),
17 * to deal in the Software without restriction, including without limitation
18 * the rights to use, copy, modify, merge, publish, distribute, sublicense,
19 * and/or sell copies of the Software, and to permit persons to whom the
20 * Software is furnished to do so, subject to the following conditions:
21 *
22 * The above copyright notice and this permission notice shall be included in
23 * all copies or substantial portions of the Software.
24 *
25 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
26 * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
27 * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
28 * THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
29 * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
30 * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
31 * DEALINGS IN THE SOFTWARE.
32 *
33 * Neither the name of the California Institute of Technology (Caltech), nor
34 * of the European Bioinformatics Institute (EMBL-EBI), nor of the University
35 * of Heidelberg, nor the names of any contributors, may be used to endorse
36 * or promote products derived from this software without specific prior
37 * written permission.
38 * ------------------------------------------------------------------------ -->
39 */
40
41 #include <stdio.h>
42
43 #include <sbml/SBMLTypes.h>
44
45 #include <sbml/xml/XMLNode.h>
46 #include <sbml/annotation/ModelHistory.h>
47
48
printStatus(const char * message,int status)49 void printStatus(const char* message, int status)
50 {
51 printf("%s", message);
52 switch(status)
53 {
54 case LIBSBML_OPERATION_SUCCESS:
55 printf("succeeded");
56 break;
57 case LIBSBML_INVALID_OBJECT:
58 printf("invalid object");
59 break;
60 case LIBSBML_OPERATION_FAILED:
61 printf("operation failed");
62 break;
63 default:
64 printf("unknown");
65 break;
66 }
67 printf("\n");
68 }
69
70 int
main(int argc,char * argv[])71 main (int argc, char *argv[])
72 {
73
74 SBMLDocument_t* d;
75 Model_t* m;
76 unsigned int errors;
77
78 if (argc != 3)
79 {
80 printf("\n"
81 " usage: addModelHistory <input-filename> <output-filename>\n"
82 "\n");
83 return 2;
84 }
85
86 d = readSBML(argv[1]);
87 errors = SBMLDocument_getNumErrors(d);
88
89 if (errors > 0)
90 {
91 printf("Read Error(s):\n");
92 SBMLDocument_printErrors(d, stdout);
93 printf("Correct the above and re-run.\n");
94 }
95 else
96 {
97 int status;
98 Date_t* date, *date2;
99 ModelHistory_t* h = ModelHistory_create();
100 ModelCreator_t* c = ModelCreator_create();
101
102 ModelCreator_setFamilyName(c, "Keating");
103 ModelCreator_setGivenName(c, "Sarah");
104 ModelCreator_setEmail(c, "sbml-team@caltech.edu");
105 ModelCreator_setOrganisation(c, "University of Hertfordshire");
106
107
108 status = ModelHistory_addCreator(h, c);
109 printStatus("Status for addCreator: ", status);
110
111
112 date = Date_createFromString("1999-11-13T06:54:32");
113 date2 = Date_createFromString("2007-11-30T06:54:00-02:00");
114
115 status = ModelHistory_setCreatedDate(h, date);
116 printStatus("Set created date: ", status);
117
118 status = ModelHistory_setModifiedDate(h, date2);
119 printStatus("Set modified date: ", status);
120
121 m = SBMLDocument_getModel(d);
122 status = Model_setModelHistory(m, h);
123 printStatus("Set model history: ", status);
124
125 writeSBML(d, argv[2]);
126
127 Date_free(date);
128 Date_free(date2);
129 ModelCreator_free(c);
130 ModelHistory_free(h);
131 }
132
133 SBMLDocument_free(d);
134 return errors;
135 }
136
137