1#!/usr/bin/env ruby 2# 3# @file convertSBML.rb 4# @brief Converts SBML documents between levels 5# @author Alex Gutteridge (Ruby conversion of examples/c/convertSBML.c) 6# @author Ben Bornstein 7# @author Michael Hucka 8# 9# 10## <!-------------------------------------------------------------------------- 11## This sample program is distributed under a different license than the rest 12## of libSBML. This program uses the open-source MIT license, as follows: 13## 14## Copyright (c) 2013-2018 by the California Institute of Technology 15## (California, USA), the European Bioinformatics Institute (EMBL-EBI, UK) 16## and the University of Heidelberg (Germany), with support from the National 17## Institutes of Health (USA) under grant R01GM070923. All rights reserved. 18## 19## Permission is hereby granted, free of charge, to any person obtaining a 20## copy of this software and associated documentation files (the "Software"), 21## to deal in the Software without restriction, including without limitation 22## the rights to use, copy, modify, merge, publish, distribute, sublicense, 23## and/or sell copies of the Software, and to permit persons to whom the 24## Software is furnished to do so, subject to the following conditions: 25## 26## The above copyright notice and this permission notice shall be included in 27## all copies or substantial portions of the Software. 28## 29## THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 30## IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 31## FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL 32## THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 33## LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING 34## FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER 35## DEALINGS IN THE SOFTWARE. 36## 37## Neither the name of the California Institute of Technology (Caltech), nor 38## of the European Bioinformatics Institute (EMBL-EBI), nor of the University 39## of Heidelberg, nor the names of any contributors, may be used to endorse 40## or promote products derived from this software without specific prior 41## written permission. 42## ------------------------------------------------------------------------ --> 43 44require 'libSBML' 45 46latest_level = LibSBML::SBMLDocument::getDefaultLevel 47latest_version = LibSBML::SBMLDocument::getDefaultVersion 48 49if ARGV.size != 2 50 puts "Usage: ruby convertSBML.rb input-filename output-filename" 51 puts "This program will attempt to convert a model either to" 52 puts "SBML Level #{latest_level} Version #{latest_version} (if the model is not already) or, if" 53 puts "the model is already expressed in Level #{latest_level} Version #{latest_version}, this" 54 puts "program will attempt to convert the model to Level 1 Version 2." 55 exit(1) 56end 57 58d = LibSBML::readSBML(ARGV[0]) 59 60if d.getNumErrors > 0 61 puts "Encountered the following SBML error(s)" 62 d.printErrors 63 puts "Conversion skipped. Please correct the problems above first" 64 exit d.getNumErrors 65end 66 67success = false 68 69if d.getLevel < latest_level || d.getVersion < latest_version 70 puts "Attempting to convert model to SBML Level #{latest_level} Version #{latest_version}" 71 success = d.setLevelAndVersion(latest_level,latest_version) 72else 73 puts "Attempting to convert model to SBML Level 1 Version 2" 74 success = d.setLevelAndVersion(1,2) 75end 76 77if not success 78 puts "Unable to perform conversion due to the following:" 79 d.printErrors 80 puts "Conversion skipped. Either libSBML does not (yet) have" 81 puts "ability to convert this model, or (automatic) conversion" 82 puts "is not possible in this case." 83elsif d.getNumErrors > 0 84 puts "Information may have been lost in conversion; but a valid model" 85 puts "was produced by the conversion.\nThe following information " 86 puts "was provided:" 87 d.printErrors 88 LibSBML::writeSBML(d, ARGV[1]); 89else 90 puts "Conversion completed." 91 LibSBML::writeSBML(d, ARGV[1]) 92end 93 94