1INFERNAL1/a [1.1.1 | July 2014] 2NAME arch-042516 3STATES 283 4NODES 95 5CLEN 93 6W 646 7ALPH RNA 8RF yes 9CONS yes 10MAP yes 11DATE Tue Apr 26 00:12:41 2016 12COM [1] cmbuild -F --enone --noss --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/arch-ns-042516.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/arch-042516.sto 13COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch-ns.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch-ns.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch-ns.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch-ns.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/arch-ns-042516.cm 14PBEGIN 0.05 15PEND 0.05 16WBETA 1e-07 17QDBBETA1 1e-07 18QDBBETA2 1e-15 19N2OMEGA 1.52588e-05 20N3OMEGA 1.52588e-05 21ELSELF -0.08926734 22NSEQ 6998 23EFFN 6998.000000 24CKSUM 685422216 25NULL 0.000 0.000 0.000 0.000 26EFP7GF -18.5264 0.71073 27ECMLC 0.61067 -11.45660 -0.44409 1600000 999586 0.001200 28ECMGC 0.27679 -24.05225 -9.03530 1600000 25542 0.015660 29ECMLI 0.56182 -11.78460 -0.02144 1600000 889940 0.001348 30ECMGI 0.28529 -20.01914 -5.70298 1600000 23758 0.016836 31CM 32 [ ROOT 0 ] - - - - - - 33 S 0 -1 0 1 4 1 1 646 1334 -17.905 -18.112 -0.000 -16.526 34 IL 1 1 2 1 4 21 48 649 1337 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 35 IR 2 2 3 2 3 21 47 649 1336 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 36 [ MATL 1 ] 1 - G - = - 37 ML 3 2 3 5 3 23 48 648 1335 -16.095 -0.003 -8.964 -1.007 -2.626 1.731 -5.558 38 D 4 2 3 5 3 17 42 644 1332 -11.551 -1.585 -0.585 39 IL 5 5 3 5 3 23 49 651 1338 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 40 [ MATL 2 ] 2 - G - = - 41 ML 6 5 3 8 3 23 47 647 1334 -16.092 -0.007 -7.666 -5.625 0.819 1.072 -3.141 42 D 7 5 3 8 3 17 41 643 1330 -17.118 -7.152 -0.010 43 IL 8 8 3 8 3 23 48 650 1338 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 44 [ MATL 3 ] 3 - c - = - 45 ML 9 8 3 11 3 22 46 646 1333 -7.437 -0.012 -8.539 -2.688 0.925 0.817 -2.435 46 D 10 8 3 11 3 17 41 643 1330 -18.888 -4.447 -0.068 47 IL 11 11 3 11 3 23 46 646 1333 -10.967 -0.001 -18.611 0.000 0.000 0.000 0.000 48 [ MATL 4 ] 5 - g - = - 49 ML 12 11 3 14 3 22 45 645 1332 -6.849 -0.013 -16.082 -1.922 0.796 0.861 -2.440 50 D 13 11 3 14 3 17 41 643 1330 -19.310 -2.154 -0.367 51 IL 14 14 3 14 3 22 45 645 1332 -11.553 -0.000 -19.197 0.000 0.000 0.000 0.000 52 [ MATL 5 ] 7 - C - = - 53 ML 15 14 3 17 3 21 44 644 1331 -16.085 -0.000 -16.085 -1.725 1.092 0.400 -2.015 54 D 16 14 3 17 3 16 41 642 1330 -18.945 -0.041 -5.172 55 IL 17 17 3 17 3 19 44 647 1334 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 56 [ MATL 6 ] 8 - G - = - 57 ML 18 17 3 20 3 20 43 643 1330 -16.095 -0.000 -16.095 -2.718 0.624 1.053 -2.112 58 D 19 17 3 20 3 13 35 637 1325 -13.873 -3.907 -0.100 59 IL 20 20 3 20 3 19 43 646 1333 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 60 [ MATL 7 ] 9 - G - = - 61 ML 21 20 3 23 3 19 42 642 1329 -16.095 -0.004 -8.553 -1.480 -5.611 1.800 -2.851 62 D 22 20 3 23 3 13 35 637 1325 -13.873 -1.906 -0.448 63 IL 23 23 3 23 3 18 43 645 1332 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 64 [ MATL 8 ] 10 - U - + - 65 ML 24 23 3 26 3 18 41 641 1328 -16.091 -0.004 -8.439 -7.640 -4.146 -4.524 1.962 66 D 25 23 3 26 3 13 35 636 1323 -17.591 -7.625 -0.007 67 IL 26 26 3 26 3 18 42 644 1332 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 68 [ MATL 9 ] 11 - A - + - 69 ML 27 26 3 29 3 18 40 640 1327 -6.499 -0.020 -8.498 1.233 -2.685 0.406 -2.560 70 D 28 26 3 29 3 13 35 636 1323 -18.601 -2.320 -0.323 71 IL 29 29 3 29 3 18 40 640 1327 -1.937 -0.437 -19.988 0.000 0.000 0.000 0.000 72 [ MATL 10 ] 14 - G - = - 73 ML 30 29 3 32 3 17 39 639 1326 -7.816 -0.020 -6.696 -3.557 -2.597 1.895 -5.010 74 D 31 29 3 32 3 13 34 635 1322 -18.962 -3.849 -0.104 75 IL 32 32 3 32 3 18 39 639 1326 -10.587 -0.001 -18.231 0.000 0.000 0.000 0.000 76 [ MATL 11 ] 16 - C - = - 77 ML 33 32 3 35 3 17 38 638 1325 -16.071 -0.012 -6.861 -4.233 1.125 -0.657 0.179 78 D 34 32 3 35 3 13 34 635 1322 -20.128 -2.163 -0.364 79 IL 35 35 3 35 3 18 40 641 1329 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 80 [ MATL 12 ] 17 - u - = - 81 ML 36 35 3 38 3 17 37 637 1324 -16.064 -0.000 -12.112 -1.919 0.572 -0.422 0.587 82 D 37 35 3 38 3 13 34 634 1322 -20.499 -1.366 -0.708 83 IL 38 38 3 38 3 17 39 640 1328 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 84 [ MATL 13 ] 18 - u - = - 85 ML 39 38 3 41 3 16 36 636 1323 -8.013 -0.023 -6.365 -2.263 0.416 -0.906 0.944 86 D 40 38 3 41 3 12 33 633 1320 -19.816 -2.075 -0.391 87 IL 41 41 3 41 3 16 36 636 1323 -10.381 -0.001 -18.024 0.000 0.000 0.000 0.000 88 [ MATL 14 ] 20 - A - + - 89 ML 42 41 3 44 3 15 35 635 1322 -6.750 -0.013 -16.063 1.987 -5.598 -6.169 -14.955 90 D 43 41 3 44 3 12 33 632 1320 -20.556 -1.703 -0.530 91 IL 44 44 3 44 3 15 35 635 1322 -11.633 -0.000 -19.277 0.000 0.000 0.000 0.000 92 [ MATL 15 ] 22 - G - + - 93 ML 45 44 3 47 3 14 34 634 1321 -16.073 -0.000 -16.073 -3.322 -7.875 1.946 -4.561 94 D 46 44 3 47 3 12 32 632 1319 -20.028 -1.373 -0.704 95 IL 47 47 3 47 3 15 36 637 1325 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 96 [ MATL 16 ] 23 - C - + - 97 ML 48 47 3 50 3 13 33 633 1320 -16.082 -0.453 -1.892 -2.699 1.636 -3.948 -0.570 98 D 49 47 3 50 3 12 32 631 1319 -19.327 -0.905 -1.101 99 IL 50 50 3 50 3 15 36 637 1324 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 100 [ MATL 17 ] 24 - C - + - 101 ML 51 50 3 53 3 13 33 632 1320 -0.173 -3.159 -9.631 -2.365 1.669 -4.790 -0.760 102 D 52 50 3 53 3 12 31 630 1318 -24.179 -0.000 -13.213 103 IL 53 53 3 53 3 13 32 631 1319 -6.854 -0.013 -25.444 0.000 0.000 0.000 0.000 104 [ MATL 18 ] 27 - G - + - 105 ML 54 53 3 56 3 12 31 630 1318 -7.627 -0.008 -12.583 -7.560 -7.497 1.996 -10.563 106 D 55 53 3 56 3 8 27 624 1312 -16.018 -6.052 -0.022 107 IL 56 56 3 56 3 12 31 630 1318 -10.785 -0.001 -18.429 0.000 0.000 0.000 0.000 108 [ MATL 19 ] 29 - G - + - 109 ML 57 56 3 59 3 11 30 629 1317 -16.094 -0.002 -9.226 -6.725 -15.186 1.986 -5.166 110 D 58 56 3 59 3 8 27 624 1312 -16.228 -2.752 -0.232 111 IL 59 59 3 59 3 11 32 633 1320 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 112 [ MATL 20 ] 30 - U - + - 113 ML 60 59 3 62 3 10 29 628 1316 -0.790 -1.245 -16.091 -0.011 -0.924 -3.349 1.253 114 D 61 59 3 62 3 8 26 623 1311 -17.475 -7.509 -0.008 115 IL 62 62 3 62 3 10 30 629 1317 -0.347 -2.227 -27.494 0.000 0.000 0.000 0.000 116 [ MATL 21 ] 63 - A - + - 117 ML 63 62 3 65 3 8 27 624 1312 -4.820 -0.085 -5.517 1.885 -5.509 -2.273 -3.681 118 D 64 62 3 65 3 8 26 623 1311 -17.475 -0.016 -6.509 119 IL 65 65 3 65 3 10 28 625 1312 -2.959 -0.199 -21.435 0.000 0.000 0.000 0.000 120 [ MATL 22 ] 66 - G - = - 121 ML 66 65 3 68 3 9 27 623 1311 -16.063 -0.001 -10.863 -0.070 -3.039 1.062 -0.254 122 D 67 65 3 68 3 4 22 621 1308 -20.542 -1.152 -0.863 123 IL 68 68 3 68 3 9 28 627 1314 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 124 [ MATL 23 ] 67 - g - = - 125 ML 69 68 3 71 3 8 26 622 1310 -16.077 -0.001 -10.308 0.574 -0.215 0.599 -2.893 126 D 70 68 3 71 3 3 21 619 1307 -19.741 -4.576 -0.062 127 IL 71 71 3 71 3 8 27 626 1313 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 128 [ MATL 24 ] 68 - G - = - 129 ML 72 71 3 74 3 7 25 621 1309 -16.077 -0.000 -13.475 0.101 -0.590 1.154 -4.735 130 D 73 71 3 74 3 3 21 619 1307 -19.770 -0.696 -1.386 131 IL 74 74 3 74 3 7 26 625 1312 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 132 [ MATL 25 ] 69 - C - = - 133 ML 75 74 3 77 3 6 24 620 1308 -4.241 -0.078 -16.088 -4.539 1.407 -2.600 0.190 134 D 76 74 3 77 3 3 20 618 1305 -18.410 -0.058 -4.655 135 IL 77 77 3 77 3 8 27 638 1326 -0.094 -3.994 -25.806 0.000 0.000 0.000 0.000 136 [ MATL 26 ] 88 - G - + - 137 ML 78 77 3 80 3 5 22 618 1305 -16.095 -0.009 -7.308 -1.353 -2.498 1.724 -2.972 138 D 79 77 3 80 3 1 16 611 1298 -13.856 -3.890 -0.101 139 IL 80 80 3 80 3 5 23 621 1309 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 140 [ MATL 27 ] 89 - C - = - 141 ML 81 80 3 83 3 5 22 617 1304 -16.086 -0.005 -8.052 -1.964 1.330 -0.301 -1.259 142 D 82 80 3 83 3 1 16 610 1298 -18.798 -8.832 -0.003 143 IL 83 83 3 83 3 5 23 620 1308 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 144 [ MATL 28 ] 90 - c - = - 145 ML 84 83 3 86 3 5 22 616 1304 -16.080 -0.010 -7.125 -1.765 0.873 0.258 -0.560 146 D 85 83 3 86 3 1 16 610 1298 -19.451 -2.938 -0.202 147 IL 86 86 3 86 3 5 23 619 1307 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 148 [ MATL 29 ] 91 - G - = - 149 ML 87 86 3 89 3 5 22 615 1303 -7.129 -0.015 -8.234 -1.940 0.045 1.308 -2.109 150 D 88 86 3 89 3 1 16 610 1297 -20.094 -4.718 -0.056 151 IL 89 89 3 89 3 6 22 615 1303 -11.262 -0.001 -18.906 0.000 0.000 0.000 0.000 152 [ MATL 30 ] 93 - G - = - 153 ML 90 89 3 92 3 5 21 614 1302 -16.068 -0.003 -8.897 -7.025 -1.090 1.814 -7.510 154 D 91 89 3 92 3 1 16 610 1297 -20.317 -10.351 -0.001 155 IL 92 92 3 92 3 5 22 618 1305 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 156 [ MATL 31 ] 94 - c - = - 157 ML 93 92 3 95 3 5 21 613 1301 -16.065 -0.005 -8.111 -0.451 0.730 0.606 -3.495 158 D 94 92 3 95 3 1 16 610 1297 -20.467 -2.030 -0.405 159 IL 95 95 3 95 3 5 21 617 1304 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 160 [ MATL 32 ] 95 - C - + - 161 ML 96 95 3 98 3 5 20 612 1300 -16.067 -0.005 -8.302 -6.763 1.783 -5.491 -0.921 162 D 97 95 3 98 3 0 15 609 1296 -20.356 -2.744 -0.233 163 IL 98 98 3 98 3 5 21 616 1303 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 164 [ MATL 33 ] 96 - U - + - 165 ML 99 98 3 101 3 6 19 611 1299 -16.067 -0.000 -16.067 -5.996 -5.011 -7.962 1.982 166 D 100 98 3 101 3 0 15 608 1296 -20.374 -2.535 -0.273 167 IL 101 101 3 101 3 5 20 615 1302 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 168 [ MATL 34 ] 97 - c - * - 169 ML 102 101 3 104 3 5 18 610 1298 -16.072 -0.001 -10.859 -0.639 0.571 -0.023 -0.170 170 D 103 101 3 104 3 0 15 608 1295 -20.103 -2.107 -0.381 171 IL 104 104 3 104 3 4 19 614 1301 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 172 [ MATL 35 ] 98 - a - * - 173 ML 105 104 3 107 3 4 17 609 1297 -8.130 -0.005 -16.076 0.358 0.008 -0.276 -0.172 174 D 106 104 3 107 3 0 15 607 1295 -19.782 -1.315 -0.742 175 IL 107 107 3 107 3 4 17 610 1298 -1.000 -1.000 -18.907 0.000 0.000 0.000 0.000 176 [ MATL 36 ] 101 - u - * - 177 ML 108 107 3 110 3 3 16 608 1296 -16.084 -0.000 -16.084 -0.072 -0.317 -0.182 0.448 178 D 109 107 3 110 3 0 14 607 1294 -19.043 -0.005 -8.077 179 IL 110 110 3 110 3 1 15 611 1298 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 180 [ MATL 37 ] 102 - A - + - 181 ML 111 110 3 113 3 2 15 607 1295 -1.840 -0.472 -16.095 1.001 -7.088 0.985 -6.364 182 D 112 110 3 113 3 0 8 384 1042 -11.551 -1.585 -0.585 183 IL 113 113 3 113 3 3 18 654 1341 -0.039 -5.241 -29.462 0.000 0.000 0.000 0.000 184 [ MATL 38 ] 179 - A - + - 185 ML 114 113 3 116 3 1 13 372 795 -16.095 -0.016 -6.477 1.609 -0.899 -1.766 -3.072 186 D 115 113 3 116 3 0 8 369 792 -11.551 -1.585 -0.585 187 IL 116 116 3 116 3 1 14 375 799 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 188 [ MATL 39 ] 180 - g - = - 189 ML 117 116 3 119 3 3 14 371 794 -16.079 -0.000 -16.079 -3.480 0.602 0.723 -0.430 190 D 118 116 3 119 3 0 8 367 791 -19.587 -5.010 -0.045 191 IL 119 119 3 119 3 1 14 374 798 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 192 [ MATL 40 ] 181 - C - = - 193 ML 120 119 3 122 3 2 13 370 793 -6.807 -0.013 -16.079 -13.487 1.791 -1.084 -3.910 194 D 121 119 3 122 3 0 8 367 790 -19.544 -3.712 -0.115 195 IL 122 122 3 122 3 2 13 370 793 -11.592 -0.000 -19.236 0.000 0.000 0.000 0.000 196 [ MATL 41 ] 183 - C - = - 197 ML 123 122 3 125 3 1 12 369 792 -16.081 -0.001 -10.131 -2.185 1.310 0.058 -1.949 198 D 124 122 3 125 3 0 8 367 790 -19.431 -2.805 -0.223 199 IL 125 125 3 125 3 1 13 373 796 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 200 [ MATL 42 ] 184 - g - = - 201 ML 126 125 3 128 3 2 11 368 791 -16.081 -0.000 -12.432 -0.634 0.194 0.885 -1.455 202 D 127 125 3 128 3 0 8 367 790 -19.348 -9.383 -0.002 203 IL 128 128 3 128 3 1 12 372 795 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 204 [ MATL 43 ] 185 - G - = - 205 ML 129 128 3 131 3 2 10 367 790 -16.081 -0.000 -16.081 -1.485 -1.382 1.364 -0.547 206 D 130 128 3 131 3 0 8 367 790 -19.373 -2.476 -0.286 207 IL 131 131 3 131 3 1 11 371 794 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 208 [ MATL 44 ] 186 - A - + - 209 ML 132 131 3 134 3 1 9 366 789 -5.361 -0.228 -3.033 1.172 -1.909 -2.094 0.317 210 D 133 131 3 134 3 0 8 367 790 -19.090 -2.497 -0.281 211 IL 134 134 3 134 3 2 10 375 798 -0.170 -3.170 -23.858 0.000 0.000 0.000 0.000 212 [ MATL 45 ] 196 - G - + - 213 ML 135 134 3 137 3 1 9 364 787 -15.898 -3.028 -0.189 -2.109 -1.645 1.651 -1.695 214 D 136 134 3 137 3 0 8 368 791 -23.092 -0.419 -1.989 215 IL 137 137 3 137 3 1 12 374 797 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 216 [ MATL 46 ] 197 - G - = - 217 ML 138 137 3 140 3 1 10 369 793 -13.791 -0.003 -9.080 -0.924 -0.405 1.326 -2.252 218 D 139 137 3 140 3 0 8 362 785 -25.735 -4.892 -0.049 219 IL 140 140 3 140 3 1 11 373 796 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 220 [ MATL 47 ] 198 - g - = - 221 ML 141 140 3 143 3 1 9 368 792 -13.968 -0.084 -4.147 -0.393 0.243 0.841 -1.925 222 D 142 140 3 143 3 0 8 362 785 -25.686 -15.720 -0.000 223 IL 143 143 3 143 3 1 10 372 795 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 224 [ MATL 48 ] 199 - C - = - 225 ML 144 143 3 146 3 1 9 368 791 -13.884 -0.663 -1.441 -2.480 1.219 -0.877 -0.077 226 D 145 143 3 146 3 0 8 362 785 -25.710 -7.349 -0.009 227 IL 146 146 3 146 3 1 11 373 797 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 228 [ MATL 49 ] 200 - C - = - 229 ML 147 146 3 149 3 1 10 369 792 -13.272 -0.037 -5.291 -3.356 1.458 -0.627 -0.977 230 D 148 146 3 149 3 0 8 362 785 -25.841 -5.965 -0.023 231 IL 149 149 3 149 3 1 10 373 796 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 232 [ MATL 50 ] 201 - C - = - 233 ML 150 149 3 152 3 1 9 368 791 -13.372 -0.769 -1.276 -3.332 1.577 -4.092 -0.219 234 D 151 149 3 152 3 0 8 362 785 -25.824 -9.089 -0.003 235 IL 152 152 3 152 3 1 11 375 798 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 236 [ MATL 51 ] 202 - g - = - 237 ML 153 152 3 155 3 1 10 370 794 -12.628 -0.025 -5.869 -3.364 0.879 0.954 -2.970 238 D 154 152 3 155 3 0 8 362 785 -25.924 -9.048 -0.003 239 IL 155 155 3 155 3 1 10 374 797 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 240 [ MATL 52 ] 203 - c - = - 241 ML 156 155 3 158 3 1 9 369 793 -2.082 -0.606 -3.224 0.029 0.636 0.414 -3.435 242 D 157 155 3 158 3 0 8 362 785 -25.924 -2.665 -0.248 243 IL 158 158 3 158 3 4 13 376 799 -0.193 -3.000 -23.514 0.000 0.000 0.000 0.000 244 [ MATL 53 ] 212 - G - + - 245 ML 159 158 3 161 3 1 11 366 790 -13.939 -0.000 -13.939 -2.658 -3.502 1.361 0.244 246 D 160 158 3 161 3 0 8 361 784 -25.695 -9.500 -0.002 247 IL 161 161 3 161 3 1 11 370 793 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 248 [ MATL 54 ] 213 - u - + - 249 ML 162 161 3 164 3 1 10 365 789 -13.945 -0.000 -13.945 -0.396 0.385 -2.411 0.804 250 D 163 161 3 164 3 0 8 361 784 -25.693 -8.658 -0.004 251 IL 164 164 3 164 3 1 10 369 792 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 252 [ MATL 55 ] 214 - A - + - 253 ML 165 164 3 167 3 1 9 364 788 -13.958 -0.292 -2.447 1.057 -0.183 -2.195 -0.286 254 D 166 164 3 167 3 0 8 361 784 -25.689 -7.132 -0.010 255 IL 167 167 3 167 3 1 10 368 792 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 256 [ MATL 56 ] 215 - A - + - 257 ML 168 167 3 170 3 1 9 364 787 -4.644 -1.194 -0.936 1.095 -1.859 0.406 -1.924 258 D 169 167 3 170 3 0 8 361 784 -25.755 -4.569 -0.062 259 IL 170 170 3 170 3 2 10 367 790 -1.328 -0.733 -19.759 0.000 0.000 0.000 0.000 260 [ MATL 57 ] 219 - u - = - 261 ML 171 170 3 173 3 1 9 365 788 -13.098 -0.480 -1.822 -1.060 -0.993 0.377 0.782 262 D 172 170 3 173 3 0 8 360 784 -25.868 -8.816 -0.003 263 IL 173 173 3 173 3 1 11 370 793 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 264 [ MATL 58 ] 220 - g - = - 265 ML 174 173 3 176 3 1 9 365 788 -12.649 -0.048 -4.933 -2.915 -0.608 0.914 0.408 266 D 175 173 3 176 3 0 8 360 784 -25.922 -3.850 -0.104 267 IL 176 176 3 176 3 1 11 369 792 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 268 [ MATL 59 ] 221 - G - = - 269 ML 177 176 3 179 3 1 9 364 788 -13.375 -0.030 -5.615 -0.204 -3.809 1.567 -3.350 270 D 178 176 3 179 3 0 8 360 783 -25.824 -8.892 -0.003 271 IL 179 179 3 179 3 1 11 368 791 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 272 [ MATL 60 ] 222 - G - = - 273 ML 180 179 3 182 3 1 9 363 787 -13.362 -0.024 -5.912 0.032 -1.174 1.288 -3.441 274 D 181 179 3 182 3 0 8 360 783 -25.826 -3.352 -0.149 275 IL 182 182 3 182 3 1 11 367 790 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 276 [ MATL 61 ] 223 - G - = - 277 ML 183 182 3 185 3 1 9 362 786 -13.982 -0.000 -13.982 -0.131 -1.253 1.258 -1.863 278 D 184 182 3 185 3 0 8 360 783 -25.682 -7.917 -0.006 279 IL 185 185 3 185 3 1 10 366 789 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 280 [ MATL 62 ] 224 - c - = - 281 ML 186 185 3 188 3 1 8 361 785 -14.001 -0.161 -3.248 -1.530 0.381 0.201 0.265 282 D 187 185 3 188 3 0 8 360 783 -25.676 -10.153 -0.001 283 IL 188 188 3 188 3 1 9 365 788 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 284 [ MATL 63 ] 225 - c - = - 285 ML 189 188 3 191 3 1 7 360 784 -13.846 -0.122 -3.631 -2.199 0.971 0.295 -0.749 286 D 190 188 3 191 3 0 8 360 783 -25.720 -0.008 -7.493 287 IL 191 191 3 191 3 1 9 364 788 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 288 [ MATL 64 ] 226 - g - + - 289 ML 192 191 3 194 3 1 9 360 783 -0.394 -2.075 -9.002 0.545 -3.474 0.867 -0.672 290 D 193 191 3 194 3 0 3 355 779 -20.512 -8.808 -0.003 291 IL 194 194 3 194 3 2 9 359 782 -3.598 -0.124 -25.760 0.000 0.000 0.000 0.000 292 [ MATL 65 ] 230 - C - + - 293 ML 195 194 3 197 3 1 7 358 781 -16.061 -0.025 -5.846 -2.127 1.843 -5.622 -2.624 294 D 196 194 3 197 3 0 3 355 779 -20.632 -0.880 -1.131 295 IL 197 197 3 197 3 1 9 362 785 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 296 [ MATL 66 ] 231 - c - = - 297 ML 198 197 3 200 3 1 9 357 780 -16.055 -0.001 -11.547 -2.841 0.958 0.490 -0.962 298 D 199 197 3 200 3 0 3 353 776 -20.881 -2.033 -0.404 299 IL 200 200 3 200 3 1 9 361 784 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 300 [ MATL 67 ] 233 - c - = - 301 ML 201 200 3 203 3 1 8 356 779 -16.064 -0.021 -6.132 -1.358 0.952 -0.108 -0.419 302 D 202 200 3 203 3 0 3 352 775 -20.499 -2.455 -0.290 303 IL 203 203 3 203 3 1 9 360 783 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 304 [ MATL 68 ] 234 - G - = - 305 ML 204 203 3 206 3 1 10 355 778 -7.625 -0.007 -16.049 -2.679 -1.288 1.653 -1.784 306 D 205 203 3 206 3 0 2 351 774 -21.062 -0.927 -1.077 307 IL 206 206 3 206 3 1 10 355 778 -10.744 -0.001 -18.387 0.000 0.000 0.000 0.000 308 [ MATL 69 ] 236 - G - = - 309 ML 207 206 3 209 3 1 9 354 777 -7.877 -0.006 -16.074 -2.397 -3.146 1.866 -4.282 310 D 208 206 3 209 3 0 2 347 771 -19.986 -8.333 -0.004 311 IL 209 209 3 209 3 1 10 354 777 -10.515 -0.001 -18.159 0.000 0.000 0.000 0.000 312 [ MATL 70 ] 238 - G - = - 313 ML 210 209 3 212 3 1 9 353 776 -4.560 -0.063 -16.074 -5.271 -10.302 1.988 -7.449 314 D 211 209 3 212 3 0 2 347 771 -19.983 -3.494 -0.134 315 IL 212 212 3 212 3 1 10 356 779 -0.418 -1.992 -23.471 0.000 0.000 0.000 0.000 316 [ MATL 71 ] 245 - U - + - 317 ML 213 212 3 215 3 1 9 352 775 -16.076 -0.000 -14.389 -6.194 -7.555 -10.576 1.993 318 D 214 212 3 215 3 0 2 347 770 -19.850 -7.424 -0.008 319 IL 215 215 3 215 3 1 7 355 779 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 320 [ MATL 72 ] 246 - U - + - 321 ML 216 215 3 218 3 1 8 351 774 -16.076 -0.000 -16.076 -11.914 -5.401 -12.021 1.991 322 D 217 215 3 218 3 0 2 347 770 -19.847 -9.881 -0.002 323 IL 218 218 3 218 3 1 7 354 778 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 324 [ MATL 73 ] 247 - C - + - 325 ML 219 218 3 221 3 1 7 350 773 -4.246 -0.078 -16.076 -7.112 1.993 -10.287 -6.627 326 D 220 218 3 221 3 0 2 347 770 -19.847 -0.042 -5.138 327 IL 221 221 3 221 3 1 8 366 789 -0.117 -3.687 -25.482 0.000 0.000 0.000 0.000 328 [ MATL 74 ] 264 - A - + - 329 ML 222 221 3 224 3 1 6 347 771 -3.481 -0.135 -16.095 1.405 -10.336 0.433 -10.328 330 D 223 221 3 224 3 0 0 237 611 -14.762 -4.796 -0.053 331 IL 224 224 3 224 3 1 7 401 825 -0.063 -4.555 -27.134 0.000 0.000 0.000 0.000 332 [ MATL 75 ] 297 - A - + - 333 ML 225 224 3 227 3 1 5 295 661 -4.478 -0.066 -16.095 1.969 -7.896 -3.783 -7.113 334 D 226 224 3 227 3 0 0 214 574 -14.762 -4.796 -0.053 335 IL 227 227 3 227 3 1 6 346 714 -0.074 -4.322 -25.904 0.000 0.000 0.000 0.000 336 [ MATL 76 ] 318 - A - + - 337 ML 228 227 3 230 3 1 4 278 638 -3.949 -0.097 -16.095 1.836 -4.676 -2.436 -2.276 338 D 229 227 3 230 3 0 0 131 490 -14.762 -0.934 -1.069 339 IL 230 230 3 230 3 1 5 331 690 -0.074 -4.324 -26.435 0.000 0.000 0.000 0.000 340 [ MATL 77 ] 343 - U - + - 341 ML 231 230 3 233 3 1 3 48 114 -16.095 -0.019 -6.256 -6.400 -3.120 -3.535 1.921 342 D 232 230 3 233 3 0 0 44 111 -13.798 -3.832 -0.105 343 IL 233 233 3 233 3 1 3 76 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 344 [ MATL 78 ] 344 - C - = - 345 ML 234 233 3 236 3 1 4 47 112 -8.091 -0.008 -8.971 -7.533 1.983 -13.125 -4.580 346 D 235 233 3 236 3 0 0 41 107 -19.826 -7.626 -0.007 347 IL 236 236 3 236 3 1 5 47 112 -10.303 -0.001 -17.947 0.000 0.000 0.000 0.000 348 [ MATL 79 ] 346 - C - = - 349 ML 237 236 3 239 3 1 4 46 111 -16.073 -0.000 -13.855 -4.483 1.848 -3.025 -2.112 350 D 238 236 3 239 3 0 0 41 107 -20.019 -10.053 -0.001 351 IL 239 239 3 239 3 1 3 74 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 352 [ MATL 80 ] 347 - C - = - 353 ML 240 239 3 242 3 1 3 45 110 -16.073 -0.008 -7.425 -1.958 1.675 -1.037 -4.013 354 D 241 239 3 242 3 0 0 41 107 -20.024 -10.058 -0.001 355 IL 242 242 3 242 3 1 3 73 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 356 [ MATL 81 ] 348 - G - = - 357 ML 243 242 3 245 3 1 2 44 109 -6.296 -0.034 -6.593 -0.364 -0.441 1.136 -1.793 358 D 244 242 3 245 3 0 0 41 107 -20.483 -8.240 -0.005 359 IL 245 245 3 245 3 1 2 52 112 -0.585 -1.585 -21.318 0.000 0.000 0.000 0.000 360 [ MATL 82 ] 352 - G - = - 361 ML 246 245 3 248 3 1 1 42 108 -6.550 -0.018 -9.455 -1.508 0.288 1.080 -1.672 362 D 247 245 3 248 3 0 0 41 107 -21.050 -0.001 -10.084 363 IL 248 248 3 248 3 1 3 43 109 -1.000 -1.000 -20.463 0.000 0.000 0.000 0.000 364 [ MATL 83 ] 356 - C - = - 365 ML 249 248 3 251 3 1 2 41 107 -16.093 -0.000 -16.093 -2.523 1.769 -6.099 -1.313 366 D 250 248 3 251 3 0 0 33 102 -16.590 -6.625 -0.015 367 IL 251 251 3 251 3 1 1 70 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 368 [ MATL 84 ] 357 - C - = - 369 ML 252 251 3 254 3 1 1 40 105 -6.257 -0.019 -12.570 -2.552 1.028 0.721 -2.808 370 D 253 251 3 254 3 0 0 32 101 -16.590 -6.625 -0.015 371 IL 254 254 3 254 3 1 2 48 109 -0.585 -1.585 -21.385 0.000 0.000 0.000 0.000 372 [ MATL 85 ] 361 - G - = - 373 ML 255 254 3 257 3 1 1 35 104 -7.740 -0.009 -9.354 -2.538 0.376 1.145 -1.651 374 D 256 254 3 257 3 0 0 32 101 -16.736 -6.770 -0.013 375 IL 257 257 3 257 3 1 2 35 104 -10.671 -0.001 -18.315 0.000 0.000 0.000 0.000 376 [ MATL 86 ] 363 - c - = - 377 ML 258 257 3 260 3 1 1 34 103 -16.091 -0.000 -16.091 -2.768 0.840 0.827 -1.792 378 D 259 257 3 260 3 0 0 32 101 -17.714 -0.984 -1.016 379 IL 260 260 3 260 3 1 1 67 136 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 380 [ MATL 87 ] 364 - g - = - 381 ML 261 260 3 263 3 1 1 32 101 -16.093 -0.000 -16.093 -2.585 0.565 0.926 -1.139 382 D 262 260 3 263 3 0 0 31 101 -16.711 -0.124 -3.601 383 IL 263 263 3 263 3 1 1 66 135 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 384 [ MATL 88 ] 365 - C - = - 385 ML 264 263 3 266 3 1 1 31 100 -16.095 -0.000 -16.095 -4.612 1.065 0.880 -5.244 386 D 265 263 3 266 3 0 0 33 103 -13.265 -0.328 -2.299 387 IL 266 266 3 266 3 1 1 65 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 388 [ MATL 89 ] 366 - C - = - 389 ML 267 266 3 269 3 1 1 29 98 -16.095 -0.000 -14.758 -5.282 1.732 -2.641 -1.023 390 D 268 266 3 269 3 0 0 35 105 -11.551 -1.585 -0.585 391 IL 269 269 3 269 3 1 1 64 133 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 392 [ MATL 90 ] 367 - A - + - 393 ML 270 269 3 272 3 1 1 27 96 -16.095 -1.070 -0.933 1.249 -2.630 0.061 -1.256 394 D 271 269 3 272 3 0 0 33 102 -12.145 -2.179 -0.360 395 IL 272 272 3 272 3 1 1 64 133 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 396 [ MATL 91 ] 368 - C - * - 397 ML 273 272 3 275 3 1 1 28 97 -15.025 -0.000 -15.025 -12.423 1.888 -12.805 -1.742 398 D 274 272 3 275 3 0 0 2 69 -25.128 -15.162 -0.000 399 IL 275 275 3 275 3 1 1 63 132 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 400 [ MATL 92 ] 369 - C - * - 401 ML 276 275 3 278 3 1 1 24 93 -15.025 -0.000 -15.025 -13.074 2.000 -13.131 -13.479 402 D 277 275 3 278 3 0 0 1 66 -25.128 -15.162 -0.000 403 IL 278 278 3 278 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 404 [ MATL 93 ] 370 - A - * - 405 ML 279 278 3 281 2 1 1 1 1 * 0.000 1.994 -14.741 -5.920 -14.334 406 D 280 278 3 281 2 0 0 0 0 * 0.000 407 IL 281 281 3 281 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 408 [ END 94 ] - - - - - - 409 E 282 281 3 -1 0 0 0 0 0 410// 411HMMER3/f [i1.1.1 | July 2014] 412NAME arch-042516 413LENG 93 414MAXL 646 415ALPH RNA 416RF yes 417MM no 418CONS yes 419CS yes 420MAP no 421DATE Tue Apr 26 00:12:41 2016 422COM [1] cmbuild -F --enone --noss --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/arch-ns-042516.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/arch-042516.sto 423COM [2] cmbuild -F --enone --noss --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/arch-ns-042516.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/arch-042516.sto 424NSEQ 6998 425EFFN 6998.000000 426STATS LOCAL MSV -8.3518 0.71073 427STATS LOCAL VITERBI -9.2557 0.71073 428STATS LOCAL FORWARD -3.5152 0.71073 429HMM A C G U 430 m->m m->i m->d i->m i->i d->m d->d 431 COMPO 1.65890 1.19275 1.12059 1.71380 432 1.38629 1.38629 1.38629 1.38629 433 0.00001 12.41082 11.42565 0.39730 1.11515 0.00000 * 434 1 2.08413 3.20662 0.18659 5.23912 - G = - : 435 1.38629 1.38629 1.38629 1.38629 436 0.00202 11.15628 6.21320 1.46634 0.26236 1.09861 0.40547 437 2 5.28491 0.81836 0.64352 3.56339 - G = - : 438 1.38629 1.38629 1.38629 1.38629 439 0.00495 11.15429 5.31376 1.46634 0.26236 4.95724 0.00706 440 3 3.24927 0.74516 0.82028 3.07410 - c = - : 441 1.38629 1.38629 1.38629 1.38629 442 0.00849 5.15520 5.91853 0.00050 7.60175 3.08277 0.04692 443 4 2.71822 0.83474 0.78974 3.07785 - g = - : 444 1.38629 1.38629 1.38629 1.38629 445 0.00873 4.74703 11.14699 0.00033 8.00817 1.49286 0.25454 446 5 2.58201 0.62972 1.10936 2.78274 - C = - : 447 1.38629 1.38629 1.38629 1.38629 448 0.00003 11.14908 11.14908 1.46634 0.26236 0.02813 3.58493 449 6 3.26998 0.95376 0.65611 2.85012 - G = - : 450 1.38629 1.38629 1.38629 1.38629 451 0.00003 11.15611 11.15611 1.46634 0.26236 2.70826 0.06898 452 7 2.41248 5.27540 0.13853 3.36231 - G = - : 453 1.38629 1.38629 1.38629 1.38629 454 0.00268 11.15611 5.92815 1.46634 0.26236 1.32138 0.31029 455 8 6.68193 4.25975 4.52216 0.02660 - U + - : 456 1.38629 1.38629 1.38629 1.38629 457 0.00290 11.15350 5.84914 1.46634 0.26236 5.28529 0.00508 458 9 0.53178 3.24731 1.10510 3.16095 - A + - : 459 1.38629 1.38629 1.38629 1.38629 460 0.01392 4.50504 5.89012 0.30272 1.34248 1.60777 0.22356 461 10 3.85173 3.18671 0.07291 4.85862 - G = - : 462 1.38629 1.38629 1.38629 1.38629 463 0.01418 5.41750 4.64119 0.00065 7.33854 2.66784 0.07193 464 11 4.32031 0.60654 1.84184 1.26251 - C = - : 465 1.38629 1.38629 1.38629 1.38629 466 0.00866 11.13982 4.75557 1.46634 0.26236 1.49947 0.25264 467 12 2.71642 0.98949 1.67883 0.97942 - u = - : 468 1.38629 1.38629 1.38629 1.38629 469 0.00024 11.13492 8.39554 1.46634 0.26236 0.94697 0.49089 470 13 2.95481 1.09813 2.01451 0.73182 - u = - : 471 1.38629 1.38629 1.38629 1.38629 472 0.01614 5.55446 4.41156 0.00075 7.19525 1.43819 0.27097 473 14 0.00868 5.26679 5.66264 11.75250 - A + - : 474 1.38629 1.38629 1.38629 1.38629 475 0.00935 4.67864 11.13405 0.00031 8.06368 1.18019 0.36704 476 15 3.68890 6.84508 0.03734 4.54772 - G + - : 477 1.38629 1.38629 1.38629 1.38629 478 0.00003 11.14093 11.14093 1.46634 0.26236 0.95162 0.48795 479 16 3.25693 0.25239 4.12284 1.78167 - C + - : 480 1.38629 1.38629 1.38629 1.38629 481 0.31392 11.14688 1.31152 1.46634 0.26236 0.62755 0.76335 482 17 3.02538 0.22969 4.70616 1.91297 - C + - : 483 1.38629 1.38629 1.38629 1.38629 484 2.18937 0.12019 6.67535 0.00868 4.75104 0.00011 9.15848 485 18 6.62621 6.58287 0.00288 8.70819 - G + - : 486 1.38629 1.38629 1.38629 1.38629 487 0.00523 5.28689 8.72194 0.00057 7.47582 4.19513 0.01518 488 19 6.04782 11.91257 0.00938 4.96689 - G + - : 489 1.38629 1.38629 1.38629 1.38629 490 0.00169 11.15522 6.39515 1.46634 0.26236 1.90726 0.16074 491 20 1.39404 2.02674 3.70795 0.51812 - U + - : 492 1.38629 1.38629 1.38629 1.38629 493 0.86331 0.54779 11.15372 1.54354 0.24032 5.20465 0.00551 494 21 0.07980 5.20480 2.96200 3.93761 - A + - : 495 1.38629 1.38629 1.38629 1.38629 496 0.05894 3.34123 3.82385 0.13761 2.05132 0.01104 4.51150 497 22 1.43494 3.49310 0.65048 1.56222 - G = - : 498 1.38629 1.38629 1.38629 1.38629 499 0.00055 11.13426 7.52977 1.46634 0.26236 0.79827 0.59803 500 23 0.98843 1.53507 0.97091 3.39143 - g = - : 501 1.38629 1.38629 1.38629 1.38629 502 0.00080 11.14372 7.14526 1.46634 0.26236 3.17150 0.04285 503 24 1.31607 1.79514 0.58641 4.66808 - G = - : 504 1.38629 1.38629 1.38629 1.38629 505 0.00010 11.14346 9.34009 1.46634 0.26236 0.48228 0.96070 506 25 4.53281 0.41111 3.18881 1.25487 - C = - : 507 1.38629 1.38629 1.38629 1.38629 508 0.05434 2.93975 11.15133 2.76845 0.06482 0.04051 3.22640 509 26 2.32418 3.11764 0.19114 3.44653 - G + - : 510 1.38629 1.38629 1.38629 1.38629 511 0.00635 11.15611 5.06521 1.46634 0.26236 2.69636 0.06983 512 27 2.74747 0.46452 1.59462 2.25871 - C = - : 513 1.38629 1.38629 1.38629 1.38629 514 0.00379 11.14979 5.58152 1.46634 0.26236 6.12171 0.00220 515 28 2.60944 0.78119 1.20725 1.77464 - c = - : 516 1.38629 1.38629 1.38629 1.38629 517 0.00721 11.14603 4.93858 1.46634 0.26236 2.03647 0.13982 518 29 2.73077 1.35518 0.47967 2.84833 - G = - : 519 1.38629 1.38629 1.38629 1.38629 520 0.01052 4.94172 5.70730 0.00041 7.80641 3.27044 0.03873 521 30 6.25581 2.14164 0.12869 6.59174 - G = - : 522 1.38629 1.38629 1.38629 1.38629 523 0.00211 11.13749 6.16686 1.46634 0.26236 7.17459 0.00077 524 31 1.69920 0.88042 0.96658 3.80855 - c = - : 525 1.38629 1.38629 1.38629 1.38629 526 0.00364 11.13540 5.62200 1.46634 0.26236 1.40725 0.28079 527 32 6.07395 0.15075 5.19206 2.02436 - C + - : 528 1.38629 1.38629 1.38629 1.38629 529 0.00319 11.13696 5.75458 1.46634 0.26236 1.90172 0.16171 530 33 5.54234 4.85932 6.90489 0.01276 - U + - : 531 1.38629 1.38629 1.38629 1.38629 532 0.00003 11.13671 11.13671 1.46634 0.26236 1.75746 0.18933 533 34 1.82955 0.99080 1.40256 1.50387 - c * - : 534 1.38629 1.38629 1.38629 1.38629 535 0.00055 11.14011 7.52692 1.46634 0.26236 1.46034 0.26417 536 35 1.13838 1.38104 1.57745 1.50578 - a * - : 537 1.38629 1.38629 1.38629 1.38629 538 0.00359 5.63536 11.14336 0.69343 0.69286 0.91150 0.51403 539 36 1.43623 1.60624 1.51234 1.07546 - u * - : 540 1.38629 1.38629 1.38629 1.38629 541 0.00003 11.14857 11.14857 1.46634 0.26236 0.00371 5.59883 542 37 0.69268 6.29967 0.70341 5.79760 - A + - : 543 1.38629 1.38629 1.38629 1.38629 544 0.32749 1.27563 11.15628 3.63290 0.02680 1.09861 0.40547 545 38 0.27096 2.00922 2.61017 3.51536 - A + - : 546 1.38629 1.38629 1.38629 1.38629 547 0.01130 11.15628 4.48978 1.46634 0.26236 1.09861 0.40547 548 39 3.79839 0.96889 0.88534 1.68463 - g = - : 549 1.38629 1.38629 1.38629 1.38629 550 0.00003 11.14501 11.14501 1.46634 0.26236 3.47241 0.03153 551 40 10.73472 0.14453 2.13777 4.09660 - C = - : 552 1.38629 1.38629 1.38629 1.38629 553 0.00898 4.71853 11.14534 0.00032 8.03505 2.57292 0.07938 554 41 2.90056 0.47804 1.34611 2.73706 - C = - : 555 1.38629 1.38629 1.38629 1.38629 556 0.00091 11.14617 7.02214 1.46634 0.26236 1.94396 0.15448 557 42 1.82569 1.25206 0.77258 2.39515 - g = - : 558 1.38629 1.38629 1.38629 1.38629 559 0.00020 11.14674 8.61731 1.46634 0.26236 6.50354 0.00150 560 43 2.41559 2.34408 0.44064 1.76537 - G = - : 561 1.38629 1.38629 1.38629 1.38629 562 0.00003 11.14657 11.14657 1.46634 0.26236 1.71597 0.19819 563 44 0.57386 2.70974 2.83751 1.16627 - A + - : 564 1.38629 1.38629 1.38629 1.38629 565 0.15837 3.71584 2.10265 2.19721 0.11779 1.73082 0.19497 566 45 2.84826 2.52670 0.24217 2.56126 - G + - : 567 1.38629 1.38629 1.38629 1.38629 568 2.09914 11.01968 0.13077 1.46634 0.26236 0.29035 1.37832 569 46 2.02695 1.66690 0.46687 2.94748 - G = - : 570 1.38629 1.38629 1.38629 1.38629 571 0.00192 9.55909 6.29375 1.46634 0.26236 3.39092 0.03426 572 47 1.65848 1.21779 0.80325 2.72089 - g = - : 573 1.38629 1.38629 1.38629 1.38629 574 0.05819 9.68203 2.87417 1.46634 0.26236 10.89633 0.00002 575 48 3.10553 0.54104 1.99428 1.43993 - C = - : 576 1.38629 1.38629 1.38629 1.38629 577 0.45927 9.62398 0.99916 1.46634 0.26236 5.09369 0.00615 578 49 3.71251 0.37594 1.82079 2.06323 - C = - : 579 1.38629 1.38629 1.38629 1.38629 580 0.02597 9.19945 3.66756 1.46634 0.26236 4.13484 0.01613 581 50 3.69557 0.29344 4.22274 1.53799 - C = - : 582 1.38629 1.38629 1.38629 1.38629 583 0.53291 9.26872 0.88429 1.46634 0.26236 6.30030 0.00184 584 51 3.71814 0.77730 0.72534 3.44470 - g = - : 585 1.38629 1.38629 1.38629 1.38629 586 0.01742 8.75335 4.06811 1.46634 0.26236 6.27155 0.00189 587 52 1.36611 0.94522 1.09905 3.76698 - c = - : 588 1.38629 1.38629 1.38629 1.38629 589 0.42032 1.44345 2.23445 2.07942 0.13353 1.84730 0.17158 590 53 3.22857 3.81351 0.44286 1.21700 - G + - : 591 1.38629 1.38629 1.38629 1.38629 592 0.00013 9.66152 9.66152 1.46634 0.26236 6.58491 0.00138 593 54 1.66101 1.11921 3.05778 0.82891 - u + - : 594 1.38629 1.38629 1.38629 1.38629 595 0.00013 9.66622 9.66622 1.46634 0.26236 6.00114 0.00248 596 55 0.65343 1.51338 2.90794 1.58479 - A + - : 597 1.38629 1.38629 1.38629 1.38629 598 0.20273 9.67464 1.69586 1.46634 0.26236 4.94327 0.00716 599 56 0.62726 2.67472 1.10521 2.71992 - A + - : 600 1.38629 1.38629 1.38629 1.38629 601 0.82729 3.21896 0.64862 0.50792 0.92066 3.16733 0.04303 602 57 2.12107 2.07483 1.12470 0.84451 - u = - : 603 1.38629 1.38629 1.38629 1.38629 604 0.33269 9.07893 1.26270 1.46634 0.26236 6.11091 0.00222 605 58 3.40668 1.80782 0.75277 1.10329 - g = - : 606 1.38629 1.38629 1.38629 1.38629 607 0.03345 8.76778 3.41926 1.46634 0.26236 2.66896 0.07184 608 59 1.52795 4.02665 0.30019 3.70858 - G = - : 609 1.38629 1.38629 1.38629 1.38629 610 0.02072 9.27062 3.89179 1.46634 0.26236 6.16381 0.00211 611 60 1.36429 2.20024 0.49323 3.77175 - G = - : 612 1.38629 1.38629 1.38629 1.38629 613 0.01684 9.26194 4.09782 1.46634 0.26236 2.32357 0.10306 614 61 1.47680 2.25482 0.51415 2.67752 - G = - : 615 1.38629 1.38629 1.38629 1.38629 616 0.00012 9.69145 9.69145 1.46634 0.26236 5.48730 0.00415 617 62 2.44670 1.12218 1.24690 1.20245 - c = - : 618 1.38629 1.38629 1.38629 1.38629 619 0.11125 9.70506 2.25164 1.46634 0.26236 7.03777 0.00088 620 63 2.91084 0.71316 1.18195 1.90516 - c = - : 621 1.38629 1.38629 1.38629 1.38629 622 0.08422 9.59708 2.51695 1.46634 0.26236 0.00557 5.19348 623 64 1.00870 3.79402 0.78557 1.85188 - g + - : 624 1.38629 1.38629 1.38629 1.38629 625 1.43855 0.27341 6.23987 0.08617 2.49426 6.10507 0.00223 626 65 2.86051 0.10854 5.28330 3.20533 - C + - : 627 1.38629 1.38629 1.38629 1.38629 628 0.01756 11.13283 4.05190 1.46634 0.26236 0.60985 0.78402 629 66 3.35544 0.72207 1.04681 2.05335 - c = - : 630 1.38629 1.38629 1.38629 1.38629 631 0.00035 11.12835 8.00409 1.46634 0.26236 1.40934 0.28012 632 67 2.32734 0.72662 1.46123 1.67690 - c = - : 633 1.38629 1.38629 1.38629 1.38629 634 0.01438 11.13492 4.25014 1.46634 0.26236 1.70171 0.20135 635 68 3.24306 2.27902 0.24083 2.62285 - G = - : 636 1.38629 1.38629 1.38629 1.38629 637 0.00509 5.28495 11.12455 0.00058 7.44688 0.64228 0.74674 638 69 3.04796 3.56721 0.09270 4.35463 - G = - : 639 1.38629 1.38629 1.38629 1.38629 640 0.00428 5.45974 11.14138 0.00068 7.28854 5.77625 0.00311 641 70 5.03971 8.52690 0.00814 6.54979 - G = - : 642 1.38629 1.38629 1.38629 1.38629 643 0.04333 3.16080 11.14141 1.38052 0.28961 2.42195 0.09294 644 71 5.67970 6.62333 8.71682 0.00492 - U + - : 645 1.38629 1.38629 1.38629 1.38629 646 0.00006 11.14272 9.97351 1.46634 0.26236 5.14598 0.00584 647 72 9.64441 5.13006 9.71844 0.00606 - U + - : 648 1.38629 1.38629 1.38629 1.38629 649 0.00003 11.14276 11.14276 1.46634 0.26236 6.84903 0.00106 650 73 6.31618 0.00455 8.51670 5.97969 - C + - : 651 1.38629 1.38629 1.38629 1.38629 652 0.05415 2.94329 11.14276 2.55557 0.08083 0.02881 3.56143 653 74 0.41239 8.55066 1.08606 8.54477 - A + - : 654 1.38629 1.38629 1.38629 1.38629 655 0.09383 2.41295 11.15592 3.15761 0.04346 3.32426 0.03666 656 75 0.02124 6.85957 4.00826 6.31637 - A + - : 657 1.38629 1.38629 1.38629 1.38629 658 0.04592 3.10398 11.15592 2.99572 0.05129 3.32426 0.03666 659 76 0.11381 4.62754 3.07486 2.96421 - A + - : 660 1.38629 1.38629 1.38629 1.38629 661 0.06696 2.73711 11.15592 2.99686 0.05123 0.64768 0.74078 662 77 5.82225 3.54873 3.83666 0.05476 - U + - : 663 1.38629 1.38629 1.38629 1.38629 664 0.01319 11.15612 4.33615 1.46634 0.26236 2.65627 0.07280 665 78 6.60747 0.01190 10.48397 4.56069 - C = - : 666 1.38629 1.38629 1.38629 1.38629 667 0.00568 5.60791 6.21793 0.00079 7.14156 5.28602 0.00507 668 79 4.49390 0.10505 3.48272 2.85049 - C = - : 669 1.38629 1.38629 1.38629 1.38629 670 0.00008 11.14103 9.60328 1.46634 0.26236 6.96809 0.00094 671 80 2.74381 0.22524 2.10480 4.16808 - C = - : 672 1.38629 1.38629 1.38629 1.38629 673 0.00585 11.14098 5.14682 1.46634 0.26236 6.97152 0.00094 674 81 1.63863 1.69219 0.59871 2.62944 - G = - : 675 1.38629 1.38629 1.38629 1.38629 676 0.02335 4.36426 4.56981 1.09864 0.40545 5.71176 0.00331 677 82 2.43146 1.18682 0.63781 2.54525 - G = - : 678 1.38629 1.38629 1.38629 1.38629 679 0.01217 4.54042 6.55348 0.69324 0.69305 0.00092 6.98986 680 83 3.13507 0.15988 5.61365 2.29655 - C = - : 681 1.38629 1.38629 1.38629 1.38629 682 0.00003 11.15491 11.15491 1.46634 0.26236 4.59182 0.01019 683 84 3.15517 0.67393 0.88681 3.33258 - C = - : 684 1.38629 1.38629 1.38629 1.38629 685 0.01333 4.33711 8.71281 1.09864 0.40545 4.59182 0.01019 686 85 3.14518 1.12550 0.59268 2.53064 - G = - : 687 1.38629 1.38629 1.38629 1.38629 688 0.00622 5.36511 6.48379 0.00061 7.39682 4.69291 0.00920 689 86 3.30507 0.80404 0.81282 2.62857 - c = - : 690 1.38629 1.38629 1.38629 1.38629 691 0.00003 11.15324 11.15324 1.46634 0.26236 0.68228 0.70413 692 87 3.17780 0.99478 0.74443 2.17585 - g = - : 693 1.38629 1.38629 1.38629 1.38629 694 0.00003 11.15479 11.15479 1.46634 0.26236 0.08600 2.49611 695 88 4.58329 0.64819 0.77612 5.02109 - C = - : 696 1.38629 1.38629 1.38629 1.38629 697 0.00003 11.15618 11.15618 1.46634 0.26236 0.22714 1.59362 698 89 5.04743 0.18578 3.21684 2.09530 - C = - : 699 1.38629 1.38629 1.38629 1.38629 700 0.00005 11.15628 10.22924 1.46634 0.26236 1.09861 0.40547 701 90 0.52059 3.20958 1.34404 2.25699 - A + - : 702 1.38629 1.38629 1.38629 1.38629 703 0.74193 11.15626 0.64666 1.46634 0.26236 1.51006 0.24961 704 91 9.99718 0.07777 10.26174 2.59376 - C * - : 705 1.38629 1.38629 1.38629 1.38629 706 0.00006 10.41439 10.41439 1.46634 0.26236 10.50969 0.00003 707 92 10.44849 0.00008 10.48828 10.72903 - C * - : 708 1.38629 1.38629 1.38629 1.38629 709 0.00006 10.41439 10.41439 1.46634 0.26236 10.50969 0.00003 710 93 0.00416 11.60426 5.48951 11.32163 - A * - : 711 1.38629 1.38629 1.38629 1.38629 712 * 0.00000 * 0.45905 0.99935 0.00000 * 713// 714