1 /** 2 * UGENE - Integrated Bioinformatics Tools. 3 * Copyright (C) 2008-2021 UniPro <ugene@unipro.ru> 4 * http://ugene.net 5 * 6 * This program is free software; you can redistribute it and/or 7 * modify it under the terms of the GNU General Public License 8 * as published by the Free Software Foundation; either version 2 9 * of the License, or (at your option) any later version. 10 * 11 * This program is distributed in the hope that it will be useful, 12 * but WITHOUT ANY WARRANTY; without even the implied warranty of 13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 14 * GNU General Public License for more details. 15 * 16 * You should have received a copy of the GNU General Public License 17 * along with this program; if not, write to the Free Software 18 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, 19 * MA 02110-1301, USA. 20 */ 21 22 #ifndef _U2_GENEBYGENEREPORT_WORKER_H_ 23 #define _U2_GENEBYGENEREPORT_WORKER_H_ 24 25 #include <QList> 26 #include <QMap> 27 28 #include <U2Core/AnnotationData.h> 29 30 #include <U2Lang/LocalDomain.h> 31 #include <U2Lang/WorkflowUtils.h> 32 33 namespace U2 { 34 namespace LocalWorkflow { 35 36 class GeneByGeneReportWorker : public BaseWorker { 37 Q_OBJECT 38 public: 39 GeneByGeneReportWorker(Actor *p); 40 41 virtual void init(); 42 virtual Task *tick(); 43 virtual void cleanup(); 44 45 // for files in the report 46 virtual QStringList getOutputFiles(); 47 48 private: 49 IntegralBus *inChannel; 50 QStringList outFiles; 51 QMap<QString, QPair<DNASequence, QList<SharedAnnotationData>>> geneData; 52 53 private slots: 54 void sl_taskFinished(); 55 }; // GeneByGeneReportWorker 56 57 class GeneByGeneReportWorkerFactory : public DomainFactory { 58 public: 59 static const QString ACTOR_ID; 60 GeneByGeneReportWorkerFactory()61 GeneByGeneReportWorkerFactory() 62 : DomainFactory(ACTOR_ID) { 63 } 64 static void init(); 65 virtual Worker *createWorker(Actor *a); 66 }; // GeneByGeneReportWorkerFactory 67 68 class GeneByGeneReportPrompter : public PrompterBase<GeneByGeneReportPrompter> { 69 Q_OBJECT 70 public: 71 GeneByGeneReportPrompter(Actor *p = nullptr) 72 : PrompterBase<GeneByGeneReportPrompter>(p) { 73 } 74 75 protected: 76 QString composeRichDoc(); 77 78 }; // GeneByGeneReportPrompter 79 80 } // namespace LocalWorkflow 81 } // namespace U2 82 83 #endif //_U2_GENEBYGENEREPORT_WORKER_H_ 84